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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96411_cuf16 >transcript:BL96411_cuf16-protein ID=transcript:BL96411_cuf16-protein|Name=transcript:BL96411_cuf16|organism=Branchiostoma lanceolatum|type=polypeptide|length=217bp
EEVAQFTTQVLEALHYLHTQKIVHLDVKPDNLLLESRRRLDVRLTDFGCA
RTFPSKTLGELQSTPEFVAPEVVNYETAGPAADIWSVGVIAFLCLSAQSP
FLGVGDHQTIMKVSKGRYDLSRVFKSATPYCRQFVQDCLVLSPSDRRPSA
FYLLNHDWLINTPERRKHRQAAVFPSAQLKAYSEDYRQRRAALSTKEKIE
IRPYKHRPETLRRLHHR Run BLAST on NCBI mRNA from alignment at Sc0000008:5995571..6000448+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96411_cuf16 ID=transcript:BL96411_cuf16|Name=transcript:BL96411_cuf16|organism=Branchiostoma lanceolatum|type=mRNA|length=4878bp|location=Sequence derived from alignment at Sc0000008:5995571..6000448+ (Branchiostoma lanceolatum)
AGGAGGAAGTCGCACAGTTCACCACACAGGTGTTGGAGGTGAGGAGGGGG
GTTAGGGAAAATGGGGGAAAGAAGGGGGGGGGATACTGTAGAAGCATTTC
CATGCTTGGTTTGTACAGCAAGTTTGCTATAATGGCAATAGCTAAAGCTA
GTCAAATTGAACTACTTTATCTTCATGTACTTTTTGCCAATAAATGACTT
TAGTTTAATTTACATAACGTTGGAGAAAAGGATGGAGTGAAGATAGAGGA
AGGAAAGATGAGGAAGGGCGATCTCTGCTTGTCCTTGGCCAGTTTGGTTT
ATGTTTGACTTTGCTGTCAAGTTTCAGTCTCATCAACACAGAGGCAGGAG
CTCAGATTTCTAGGAAGTTCACTTTTAAGTGTTTTATTACCAACCTTTTC
TTCACGGTAGCATATGCAATTTTAACATCACTGGTCATTCTAAACAAAAT
AGATTTACAAAGCCAGTCAAAAACCTCCCCAACCTGTCCCCCAGGCGCTC
CACTACCTGCACACGCAGAAGATCGTCCACCTGGACGTGAAGCCGGACAA
CCTGCTGCTGGAGAGCAGGCGGCGCCTGGACGTCCGCCTCACCGACTTCG
GCTGCGCCAGAACCTTTCCCAGCAAGACTCTGGGGGAGCTGCAGAGCACA
CCAGAGTTTGTGGGTATGTAGGGAAGAATTGTCTCAATTTCGTTTGTTTG
CTTGCTTGCTTGCAACAAACAGGAGCTAGTCAGTGTCATTCTAAGGCTGG
TCCATAAGATACTAGGCCATTTAGTTTGCAGTCAAACCTGTACAAGTGGC
CACCTGTATATAAGAACAACCTGGATGATATAACCACTTTTTGATGATCC
CTTAGATAATTTTCCCAGCGACACTTGAAGCATTAAGAATCCTGTCCATA
GTGACCTGAACTGTACACATAGACCAGATTATTTCATCAGTGCCAAGACT
TCGTAATCATAAATCAGCTCAACTCAGCACACTGTGTGGAAGATAAAGAT
TTTCATTGATAACTTCTTCACAGCAGTTTTACTCTTCTCTAGCTGCAAAA
TCTCAAGCTTGTCCATTCACACTTTCCTTACCTGACTTCTTGCTTTGTGC
CCCTCCCCTGCAGCTCCTGAGGTGGTGAACTACGAGACGGCTGGTCCGGC
TGCTGACATTTGGAGCGTGGGGGTCATCGCCTTCCTGTGGTGAGGAGAAC
ATCTCTTATTCTCTCAACTTTGAACTACGGTGCACTACGAACTTTGAACT
ATGGTGAACTTCAAATTTTGAACCATGGTGAACTTTGAAGTATGGTAGAC
AGTTTATACAATTGAAATTTGGAAGACTATATGACCTTTGAATCATTGAT
TTGTGTACATGGAGACAGTCAAAGTCTGGAACATTGGAGTTTTGGCCTTC
TTTGCTGCTGCTGTAGTACCAACAGTTCTCACTAGGTGGCACTGCGACAT
GATACACACAGAACAAACTGTGCTGAAAGCTTAATTTGTTTCGGAACAAC
CACCACTCACCCCACCGCCTAAGCACACACAACCTGTTCCTGGGTAATGA
ACTCTGCTTACCACATGATGGCATTGAAACATGGAGAATGCCACAAGATC
AGCACCAACAGAGCTCACTAGGGGGCACTGCAACATATAGATCTGTGCTA
AATTTATTTCTCCCCCACAGCCTAAGCGCTCACTCCCCATTCCTGGTGGT
TATGTAGAACCAACACTTCTCACTAGGGGGCACTGCAACATTTAAATTTG
TCATTTATTTCTCCCCCCGCAGCCTGAGTGCCCAGTCCCCGTTCCTGGGC
GTGGGCGACCACCAGACCATCATGAAGGTGTCGAAGGGTCGCTACGACCT
CAGCCGCGTCTTCAAAAGCGCCACGCCGTACTGCCGGCAGTTTGTGCAGG
ACTGTCTCGTGCTGTCTCCAAGGTGAGCTGTCCATCATAGTACCGACAGC
TGTCAATCATAGTAATGACAGCTGTCAATAATGGTTCTGATGGCTTATTC
TGACAGTTAATACTGTTGTTGTCATTAAGGGGGCTCACAGCTGTCAATCA
CAACCACCTATCAATCATATGATACCTGTCAATCGTGATTCTGACATGAG
TAGTCAATCATAGTACTGACAACTGTCAATTAGATACTAAAGGTATGTTA
CGTTTCTCTCCTGTGCAGTGACCGCAGACCGTCTGCGTTCTACCTGCTGA
ACCACGATTGGCTGATCAACACGCCGGAGCGGAGAAAACACCGTCAGGCG
GCCGTGTTCCCCTCCGCCCAGCTGAAGGCGTACTCCGAGGACTACCGCCA
GCGACGGGCCGCGCTCTCTACCAAGGAGAAAATCGAAATCAGACCCTACA
AACACCGACCAGAGACCCTCCGCAGACTACACCACAGATAGCTGGGGCAG
AAAACACCAGTTAGAGACCTTCTAGCAGCAAACACCGGCCAGAGACTTTC
AATGGATAGCAAGGCATACACTCACTTGGCCATTGCACCAGTGCCACAGA
TACCTTATGCAGAAAACACACCTGTATAAACTCACCTGTTGCCTTAAACT
CTACAGCAAATAAGGATTAAACTCTAAATCTGGTAAAAATCTTCTCTAAA
CACTGTGCCAATTCACTGCCACCAGAGGGGTGTTTTGTAAGGAAGCATAA
ACTGGTCGGTTTGTGTTGTCATAGTTACAATCATCTGGGAAATCTGATTT
CGATGTCTTGTAAATTTTGTAAATTCTTTAGCTGTTTCCAGAGATTGCTG
GCAGGAGTGATCGTGACTTGACGTGTTGTTTATTTATTTATTTATTTGTG
ACTTTTTAGTTTGTATCTAGCAAAGATGAATCTTATGTACAGATTTACAA
GGAACTTAGTTTTACTTTGATAAAGGTGAAAATCAGATCTCTGCACAGGG
TTTACACCTGGACGTGTCGCATCTTTGCACACCTGGAGGTGTCACATGAT
CACCTTTGCACACCTGTAAATGTCACCTGAAGACGTCACTACACAAAAAT
GACCGAAACCAAGTTTCCAAACTTTTTTGTGTTGAGTCAACTGGGATCGC
TGCTAGGTCCATATTGGTGGAAAGGATGGATCCAAGATGGCCATCAGTCA
CGTACAGACAATGGCTCTAAAAAGGAAAACGATTATAAGAAACTAAGTTT
CTTATCACACAACTTAAAGGACTGGCAAGTCAACACAAAAGTGTTGAGGT
GAAGGCAGATCCACTGCGTGGAACATCTTCAGAATATGTATGCAAAGATC
TATCTTGAATCTTCCTTCATGAAGCCAAGCCAAGAGAGATAGAAGTCCAA
AGACCATCCATATGCAGCGGAAACAAATATACATCATAGTCAGACAGCAA
ACATGCTGTACAGTTTGATACTTACTTAAAGCAACAGATTCAAAGAAAGA
CTGTACTTCAGACATCGTACCCTGTGCAGAGATCTCCTAGTCTTCAGTTT
CAAGCTTGTTAATTGCAACTATTTCCCTGGAAATGCTGCTACCATAGGCT
AAGTTTTGTGCACTAAGTGACTTACGGTAGCTTATAATATACTTACTTTT
GAAAACCATTCTTTGGATTGTTCCATTTGAAAGTTTAGGGGAGGCCAGAA
GAAGAAAGTGCCAAGAGCAATTTTGCTCCCATTTAGAAGTTGTATATTAA
ATCTGAGTCTTCAGTCTCTAAAAATTGATCCATTCAATCAATTATAGAAT
TATATTCTAATATATATAGATACATGTATGGTTGTCACTTCTAAGCTTAC
AAATGGAATATTCTGAAGATAAAAAAAATTGTACATTTTGCTTGATTTTT
TAATGACATTGTGTTAGAATACAATTGATGGTGTAAGGCCACACCAATTC
AAAGATATGGTTCTCATCCCGGAATGGGTTCGTGTTGAACTCCCTGAAAT
TGTGTACAGACATCTCATATGTTGATTTTCCACAATCTTTTATATCCAAG
AACCATGAAATTGAATTGTAGTGGCCTAAAATTGGCATGGAATTTTCTGA
ACAAAACTGCGAAACGGGAATGTGAAGCTAAGAAAAGGCACGTGCATGGG
ACTGCAAAAGTGGCGAGATTGGTGATATCAAAGCCAGGCTTCACAACAAA
ATCACTGTGTGCTACTAATCTAAATGACTAAATCATTGTGGCCTTAGAAA
ATGCAACACAAAGTCACCTGCAGTTGCTTCACATTTCACTAGGTGGCGCT
TTTTAATGATTACTTGTTCCCCTTGTGTGTGGAAAGTTGTATGATACTAA
ATGTTTATTTCAGATTAGAACACAAATGTTTTCATAAAAGTTAATGCTAA
TTCCTTTAAACACAGCTTGTGTATTCTCTATATTTCATAAGTTTTGATAT
TTTATCATAATTCACGACATAGAAAACAGCTAGTTGTTTTGAGTATCCTA
GTTTAGAATAAAACCGAAAGTTGTGGAATCGTATTTTGGGCTGTAAATAA
AAGTACAGAGGAGTTTGGTACGGTAACCATGGTAACGCTGGGACTGGAAA
TGCGGATTTTGTGAGACGGATTTGACTGATAGAATGAACCTGTAAGATTG
TATCACACCTTAACAGGGCACGAGGAGGATTCTGTGGATTATGCAGAAGA
AAATCAAACAAGACTTCAAACAACGTCTTGGTTTTATTGCTTCTGGTGGT
GCTTCTTTGCCCAACATAGTCCCTAGATCTGTAGCAAGACTTTAGGGGTA
TATATATATAGCTATGGGACTGACGGATGGATTGATGGATTGATGGATAT
AGAGTTTGCAAGCAATTGTATAAAGGCCAAAAGATGTTTTGAGTTCAGAA
CAAAATTCAAAGGGTCATAGAGGCTGAGCCAGATACCCATTCTTATCAAT
ACGTGTGATGGGTTCTTTAACATACTTG Coding sequence (CDS) from alignment at Sc0000008:5995571..6000448+ >transcript:BL96411_cuf16 ID=transcript:BL96411_cuf16|Name=transcript:BL96411_cuf16|organism=Branchiostoma lanceolatum|type=CDS|length=3270bp|location=Sequence derived from alignment at Sc0000008:5995571..6000448+ (Branchiostoma lanceolatum)
GAGGAAGTCGCACAGTTCACCACACAGGTGTTGGAGGCGCTCCACTACCT
GCACACGCAGAAGATCGTCCACCTGGACGTGAAGCCGGACAACCTGCTGC
TGGAGAGCAGGCGGCGCCTGGACGTCCGCCTCACCGACTTCGGCTGCGCC
AGAACCTTTCCCAGCAAGACTCTGGGGGAGCTGCAGAGCACACCAGAGTT
TGTGGCTCCTGAGGTGGTGAACTACGAGACGGCTGGTCCGGCTGCTGACA
TTTGGAGCGTGGGGGTCATCGCCTTCCTGTGCCTGAGTGCCCAGTCCCCG
TTCCTGGGCGTGGGCGACCACCAGACCATCATGAAGGTGTCGAAGGGTCG
CTACGACCTCAGCCGCGTCTTCAAAAGCGCCACGCCGTACTGCCGGCAGT
TTGTGCAGGACTGTCTCGTGCTGTCTCCAAGTGACCGCAGACCGTCTGCG
TTCTACCTGCTGAACCACGATTGGCTGATCAACACGCCGGAGCGGAGAAA
ACACCGTCAGGCGGCCGTGTTCCCCTCCGCCCAGCTGAAGGCGTACTCCG
AGGACTACCGCCAGCGACGGGCCGCGCTCTCTACCAAGGAGAAAATCGAA
ATCAGACCCTACAAACACCGACCAGAGACCCTCCGCAGACTACACCACAG
ATAGGAGGAAGTCGCACAGTTCACCACACAGGTGTTGGAGGCGCTCCACT
ACCTGCACACGCAGAAGATCGTCCACCTGGACGTGAAGCCGGACAACCTG
CTGCTGGAGAGCAGGCGGCGCCTGGACGTCCGCCTCACCGACTTCGGCTG
CGCCAGAACCTTTCCCAGCAAGACTCTGGGGGAGCTGCAGAGCACACCAG
AGTTTGTGGCTCCTGAGGTGGTGAACTACGAGACGGCTGGTCCGGCTGCT
GACATTTGGAGCGTGGGGGTCATCGCCTTCCTGTGCCTGAGTGCCCAGTC
CCCGTTCCTGGGCGTGGGCGACCACCAGACCATCATGAAGGTGTCGAAGG
GTCGCTACGACCTCAGCCGCGTCTTCAAAAGCGCCACGCCGTACTGCCGG
CAGTTTGTGCAGGACTGTCTCGTGCTGTCTCCAAGTGACCGCAGACCGTC
TGCGTTCTACCTGCTGAACCACGATTGGCTGATCAACACGCCGGAGCGGA
GAAAACACCGTCAGGCGGCCGTGTTCCCCTCCGCCCAGCTGAAGGCGTAC
TCCGAGGACTACCGCCAGCGACGGGCCGCGCTCTCTACCAAGGAGAAAAT
CGAAATCAGACCCTACAAACACCGACCAGAGACCCTCCGCAGACTACACC
ACAGATAGGAGGAAGTCGCACAGTTCACCACACAGGTGTTGGAGGCGCTC
CACTACCTGCACACGCAGAAGATCGTCCACCTGGACGTGAAGCCGGACAA
CCTGCTGCTGGAGAGCAGGCGGCGCCTGGACGTCCGCCTCACCGACTTCG
GCTGCGCCAGAACCTTTCCCAGCAAGACTCTGGGGGAGCTGCAGAGCACA
CCAGAGTTTGTGGCTCCTGAGGTGGTGAACTACGAGACGGCTGGTCCGGC
TGCTGACATTTGGAGCGTGGGGGTCATCGCCTTCCTGTGCCTGAGTGCCC
AGTCCCCGTTCCTGGGCGTGGGCGACCACCAGACCATCATGAAGGTGTCG
AAGGGTCGCTACGACCTCAGCCGCGTCTTCAAAAGCGCCACGCCGTACTG
CCGGCAGTTTGTGCAGGACTGTCTCGTGCTGTCTCCAAGTGACCGCAGAC
CGTCTGCGTTCTACCTGCTGAACCACGATTGGCTGATCAACACGCCGGAG
CGGAGAAAACACCGTCAGGCGGCCGTGTTCCCCTCCGCCCAGCTGAAGGC
GTACTCCGAGGACTACCGCCAGCGACGGGCCGCGCTCTCTACCAAGGAGA
AAATCGAAATCAGACCCTACAAACACCGACCAGAGACCCTCCGCAGACTA
CACCACAGATAGGAGGAAGTCGCACAGTTCACCACACAGGTGTTGGAGGC
GCTCCACTACCTGCACACGCAGAAGATCGTCCACCTGGACGTGAAGCCGG
ACAACCTGCTGCTGGAGAGCAGGCGGCGCCTGGACGTCCGCCTCACCGAC
TTCGGCTGCGCCAGAACCTTTCCCAGCAAGACTCTGGGGGAGCTGCAGAG
CACACCAGAGTTTGTGGCTCCTGAGGTGGTGAACTACGAGACGGCTGGTC
CGGCTGCTGACATTTGGAGCGTGGGGGTCATCGCCTTCCTGTGCCTGAGT
GCCCAGTCCCCGTTCCTGGGCGTGGGCGACCACCAGACCATCATGAAGGT
GTCGAAGGGTCGCTACGACCTCAGCCGCGTCTTCAAAAGCGCCACGCCGT
ACTGCCGGCAGTTTGTGCAGGACTGTCTCGTGCTGTCTCCAAGTGACCGC
AGACCGTCTGCGTTCTACCTGCTGAACCACGATTGGCTGATCAACACGCC
GGAGCGGAGAAAACACCGTCAGGCGGCCGTGTTCCCCTCCGCCCAGCTGA
AGGCGTACTCCGAGGACTACCGCCAGCGACGGGCCGCGCTCTCTACCAAG
GAGAAAATCGAAATCAGACCCTACAAACACCGACCAGAGACCCTCCGCAG
ACTACACCACAGATAGGAGGAAGTCGCACAGTTCACCACACAGGTGTTGG
AGGCGCTCCACTACCTGCACACGCAGAAGATCGTCCACCTGGACGTGAAG
CCGGACAACCTGCTGCTGGAGAGCAGGCGGCGCCTGGACGTCCGCCTCAC
CGACTTCGGCTGCGCCAGAACCTTTCCCAGCAAGACTCTGGGGGAGCTGC
AGAGCACACCAGAGTTTGTGGCTCCTGAGGTGGTGAACTACGAGACGGCT
GGTCCGGCTGCTGACATTTGGAGCGTGGGGGTCATCGCCTTCCTGTGCCT
GAGTGCCCAGTCCCCGTTCCTGGGCGTGGGCGACCACCAGACCATCATGA
AGGTGTCGAAGGGTCGCTACGACCTCAGCCGCGTCTTCAAAAGCGCCACG
CCGTACTGCCGGCAGTTTGTGCAGGACTGTCTCGTGCTGTCTCCAAGTGA
CCGCAGACCGTCTGCGTTCTACCTGCTGAACCACGATTGGCTGATCAACA
CGCCGGAGCGGAGAAAACACCGTCAGGCGGCCGTGTTCCCCTCCGCCCAG
CTGAAGGCGTACTCCGAGGACTACCGCCAGCGACGGGCCGCGCTCTCTAC
CAAGGAGAAAATCGAAATCAGACCCTACAAACACCGACCAGAGACCCTCC
GCAGACTACACCACAGATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000008 | genome | Sc0000008:5995571..6000448 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96411_cuf16 |
| Biotype | protein_coding |
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