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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96408_cuf8 >transcript:BL96408_cuf8-protein ID=transcript:BL96408_cuf8-protein|Name=transcript:BL96408_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=285bp
KHQPVFDARTGESSLTVQSVSLRDMGQYQVKAENQHGAMACSVCLGLAES
PQFEDIMEDVEMYVGETGRLEVRLFGKPFPDITWLKGTEELPKEKRITRT
RSDEEVVLTINSAVLSDTGVYTCTAKNRAGEVSCKAQVTVSPVPESTDAE
DEETCWTKIHTIREQYRIHEELGKGAFGIIKRVTHRKTGKKFAAKYIRYK
PHRKADLQREVTVMAKLEHAGIVQLAETFLDNKFIVMVMEYVAMGELLEH
LVKVPDLCEADIVQYLAQLLGALQYIHSKDIVHLD Run BLAST on NCBI mRNA from alignment at Sc0000008:5972121..5976231+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96408_cuf8 ID=transcript:BL96408_cuf8|Name=transcript:BL96408_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=4111bp|location=Sequence derived from alignment at Sc0000008:5972121..5976231+ (Branchiostoma lanceolatum)
GAAGCACCAGCCTGTATTTGACGCCAGGACGGGGGAGTCCAGCCTGACGG
TTCAGAGCGTGTCCCTGAGGGACATGGGGCAGTACCAGGTCAAGGCAGAG
AACCAGCACGGCGCCATGGCCTGCTCCGTGTGCCTCGGACTTGCAGGTAA
ACAAATACTAGTAAACAATCCAGTCATTGTCTTTCAATTATATACTTCTG
TGATACAAAAGGCCCCCTTTTGATTCCGCTAGACAGCAATTGGTGAGATC
CAATTTTTGTGTGCCTCAGACTCCCAGAAACCATGATGTTGCACAAAGAC
TCCCCTGCTGTTGTCTGCGGACTATTCTCAGTCTCACAGTTTGTAATACA
AGACTCCCAGAAACCTGATGTTTTACAAAAATTCACCGAGTTTGCAATTT
ATTTGCACTGAGTCTCCAAAGTTTAAGGATTAGACATTTTACACTCTGTT
GTTTCTAATAATATTGTCTGTCACCTTGGCCAGTATTGCACTGTTGTTTT
TTGTGATATGGTCGGTCACTGCCGATTTGTTTCCCTGCTGTTGTTTGTTT
ATTTGTTTGTTTGTTGTCCGCAGAGTCTCCCCAGTTTGAGGACATCATGG
AGGATGTGGAGATGTATGTGGGGGAGACGGGTCGCCTGGAGGTCAGACTG
TTCGGCAAACCGTTCCCCGACATCACATGGCTAAAGGTGTGTATCACATG
TATCTTAAACAGCCAGGTATAATCTTAAAGGCTCTTGTACATGTAGGAGT
ATCACTTAAACATGGCAAACAGTTCCCAACATCACCTGGCTCAAGGTGTG
TATCACAATGTACCTTAAACACAGCAAACCTGTAACTGTATCTTACAGCC
AGGAATGCTCTTAAAGGCTCTGGCTCAAAGTACTGTAGCTAACAACCAGG
CATAATCTTAATTAAGGCTCTTGTAGGCATTATAAGAACATGGTCTGGCT
AGTGCTGTTCGGCAAACCCTTCCCTGACATCACATGGCTAAAGGTGTGTA
TCACCTGTATCTGTATCTTACAGCCAGATTCTTGTAGAAATGGCGCTTAA
ACATGGCAAACCTTTCCCAGACATCACATGGCTCAAGGTGTGTATCACCT
GTATCTGTATCTTACAGCCAGATTCTTGTAGAAATGGCGCTTAAACATGG
CAAACCTTTCCCTGTCATCACATGGCTTAAGGTGTGTATCACAATGTACC
TTAAACACAGCAAACCTGTACCTGTATCTTACAGCCAGGAAGGCTCTTAA
AGGCTCTGGCTCAAAGTACTGTACCTAACAACCAGGCATACTCTTAATCA
AGGCTCTTGTAGGCATTGTAAGAACATGGTCTGGGAGCTATGCACAGGTC
TGGCTACTGCTATTCGGCAAACCTTCCCCGGCACACCTGGCTCAAGGTGT
GTATCACCTGAACCTAACAACCAGGCATAATCGATAAGGCTCTTGTAGGG
GTTAAAGAACATAGCCAAGGGCTCTCTAAACATGTAGATCTGTCTAACAC
TGTGCGATGAACCTTTTCCTGACATCACATGGTTGCATGATCTGACTGTG
TTTAGCAACATCAGGGCAGATCATGCTTTCCACTAGATCTTCCAAAAAGA
ATTAAAGAGTAGAAGTATACAGTTCGGTTTAGTTCAGTTCATCCTCTGTG
AGGTGACACACAAGTGTTGCCACAGGTCCCTGTCAAGCATGACAGAGCGG
AGTTCATCATCAGAAGTATACAGTCACTACTAAATCATTCAGTACACATA
CTAGAATCTGTTTAAAACGTTGGTAGAAGCTGGTGTGTTGCGCGGAAGGG
CAGTTATACCGGCTGTACAGATACAGAACTTGCAGACTGAGTTTTTGATG
TGTTTGCAGGGTACGGAGGAACTTCCTAAGGAGAAGCGCATCACCAGAAC
CCGGAGCGATGAAGAGGTGGTTCTGACCATCAACTCCGCTGTCCTGTCTG
ACACAGGAGTCTACACCTGCACCGCTAAGAACAGAGCAGGGGAGGTGTCC
TGCAAGGCACAGGTCACTGTGTCTCCAGGTAAGGGGTGTTAGAATGCATT
AAGTTTCAAGTCAAGGTTTTTCTTGTAAGGTGTCTCAAAAACAATTTTGT
GCTAGGCTCTTGGAAAAAATGTCTTTTGGTAGGATTCTTAGAAACAAAAG
TCTACAGGCACAGTGTGTCGAGGTTTGTATTTAGTCTCAAGTTACTGTGT
CCTTAAATAGCAAGATGGCTTAGAAACAATCCGTCCCTTATACATTGCAA
GACACCTTTGAGATTAACTTACTGTGACAGTCTTCTGGCAAAAAGCCATA
AAAAGTCAAGTAATGTTGTATTTCTGTGCAATCTGCAGTGCCCGAGTCCA
CAGATGCAGAAGACGAGGAAACCTGCTGGACAAAAATCCACACAATCAGG
GAGCAGTACAGGATACACGAGGAGCTCGGCAAGTAAGTACCACGGAGAAA
AACTTCTCAATCTGGATAACATAAATGTACAGTAAACTACTTCTGGGTAA
AACAGCTCTTCTATTGGTAGATACATGTATAAAATTACAGTCAAAACTGC
CCAAGAAGACCACTTAAGGTACCGATTATATCTGGTCTATGCGGACAGGT
GGTCACTATATATATATATAGACAGGATTCTTAATGCTTGTGACAATGGG
ATAAATGATAAACAAGGGTTCACAAAAAAAAGGCCAGGTTTGACAGTACG
CTGTTAATTGTGTTTGAAAGCAATCGGTTTGAACCAGGCTGAGCACAATA
ATCACAATTTATACCGCTGGGGCTTATCACCAGTATCTTTGAAGATTAGT
GCGGTGAGCTTTTTATCATTAACTTATTATTATAAAAAATATCAAAACAA
TCCATCAAGGTATTCTCGAGTTATGCTGTGCCACTACAAACAAACAAACA
AACAGACAGACAAACACTACCCTCTGCATAACCTTCTTGGCGAAGGTAAC
AACAAATGCTTCTATAAGTGGAGCTGTTATCCAGAGTGAGAACAACCCCT
TTCTTCACTGTACATCCTGTACACCTGAACCTGTCCTGTTGTTGCAGAGG
TGCCTTTGGGATCATCAAGCGAGTGACCCACCGCAAAACGGGGAAGAAAT
TTGCCGCCAAGTACATCCGGTACAAGCCCCACCGCAAGGCCGACCTCCAG
CGGGAGGTCACGGTCATGGCCAAACTGGAGCATGCTGGGATTGTGCAACT
GGCGGAAACATTCCTGGACAACAAGTTCATTGTCATGGTGATGGAATAGT
ATCCTTTCAAAAAAGACATGTTGTTTAAGCCTGGCAGATTCTGAGCTAGT
TCTCATGATAATTACAACTACATTGACCAATAGACTAGTCTAATTTCATC
TCATGTAGCAGTCCAATAGAGTGGATTATAAAAACTATACATTTTGCAGG
TTACATTTACAAAGGAATGCATCAACCACATGAAAATGTGTGGTGACCAA
AAATCTATACATTTCTCTGATAGTTTAGGACTTAATCAGATACCAAATTT
CATTACAATCCATGACACTAGGTGAAACATTGAGAAAATGGAGAAGGGTG
GAGAAAACTGGTTGCCAGATCTGATGAGGTGTCCAAATGGTCAAATAATA
ATCCACAACTAAATGAGCTTAGTACAAGATGTCTGTGAGAGTAACACCCC
GACCAATCAAACCACGTGAATCGCATTGAAACTCAGATTTGTATCAGCCA
TTTCCCGACGAATCCCTTTCTAACTTGCGTTAACGACTACATCTGACAAA
ACAAACTCGCCAGTGAGATGGTGGAAGGTGTCAGCTTTCCAAAGATGTTT
TCAGATTGACAATTTTGGCATTTTGGAAGTGATTGAAAGCGACCGCGATT
TCATGTTTAGAGAAAAGTAGTTTAAACTAGAAGTTAATTAATAATTAGGC
TAAACTAAGGGCTATTATAGATGAGATTAGTAGATCAGAGGACTGTGTGA
GAGTAAGAAGCACCTTAACCCTGGGCAGCGTTGCGATGGGGGAGCTGCTG
GAGCATCTGGTGAAGGTGCCGGACCTGTGCGAGGCTGACATCGTGCAGTA
CCTCGCCCAGCTGCTAGGGGCGCTGCAGTACATCCACAGCAAGGACATCG
TCCATTTGGAC Coding sequence (CDS) from alignment at Sc0000008:5972121..5976231+ >transcript:BL96408_cuf8 ID=transcript:BL96408_cuf8|Name=transcript:BL96408_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=5130bp|location=Sequence derived from alignment at Sc0000008:5972121..5976231+ (Branchiostoma lanceolatum)
AAGCACCAGCCTGTATTTGACGCCAGGACGGGGGAGTCCAGCCTGACGGT
TCAGAGCGTGTCCCTGAGGGACATGGGGCAGTACCAGGTCAAGGCAGAGA
ACCAGCACGGCGCCATGGCCTGCTCCGTGTGCCTCGGACTTGCAGAGTCT
CCCCAGTTTGAGGACATCATGGAGGATGTGGAGATGTATGTGGGGGAGAC
GGGTCGCCTGGAGGTCAGACTGTTCGGCAAACCGTTCCCCGACATCACAT
GGCTAAAGGGTACGGAGGAACTTCCTAAGGAGAAGCGCATCACCAGAACC
CGGAGCGATGAAGAGGTGGTTCTGACCATCAACTCCGCTGTCCTGTCTGA
CACAGGAGTCTACACCTGCACCGCTAAGAACAGAGCAGGGGAGGTGTCCT
GCAAGGCACAGGTCACTGTGTCTCCAGTGCCCGAGTCCACAGATGCAGAA
GACGAGGAAACCTGCTGGACAAAAATCCACACAATCAGGGAGCAGTACAG
GATACACGAGGAGCTCGGCAAAGGTGCCTTTGGGATCATCAAGCGAGTGA
CCCACCGCAAAACGGGGAAGAAATTTGCCGCCAAGTACATCCGGTACAAG
CCCCACCGCAAGGCCGACCTCCAGCGGGAGGTCACGGTCATGGCCAAACT
GGAGCATGCTGGGATTGTGCAACTGGCGGAAACATTCCTGGACAACAAGT
TCATTGTCATGGTGATGGAATACGTTGCGATGGGGGAGCTGCTGGAGCAT
CTGGTGAAGGTGCCGGACCTGTGCGAGGCTGACATCGTGCAGTACCTCGC
CCAGCTGCTAGGGGCGCTGCAGTACATCCACAGCAAGGACATCGTCCATT
TGGACAAGCACCAGCCTGTATTTGACGCCAGGACGGGGGAGTCCAGCCTG
ACGGTTCAGAGCGTGTCCCTGAGGGACATGGGGCAGTACCAGGTCAAGGC
AGAGAACCAGCACGGCGCCATGGCCTGCTCCGTGTGCCTCGGACTTGCAG
AGTCTCCCCAGTTTGAGGACATCATGGAGGATGTGGAGATGTATGTGGGG
GAGACGGGTCGCCTGGAGGTCAGACTGTTCGGCAAACCGTTCCCCGACAT
CACATGGCTAAAGGGTACGGAGGAACTTCCTAAGGAGAAGCGCATCACCA
GAACCCGGAGCGATGAAGAGGTGGTTCTGACCATCAACTCCGCTGTCCTG
TCTGACACAGGAGTCTACACCTGCACCGCTAAGAACAGAGCAGGGGAGGT
GTCCTGCAAGGCACAGGTCACTGTGTCTCCAGTGCCCGAGTCCACAGATG
CAGAAGACGAGGAAACCTGCTGGACAAAAATCCACACAATCAGGGAGCAG
TACAGGATACACGAGGAGCTCGGCAAAGGTGCCTTTGGGATCATCAAGCG
AGTGACCCACCGCAAAACGGGGAAGAAATTTGCCGCCAAGTACATCCGGT
ACAAGCCCCACCGCAAGGCCGACCTCCAGCGGGAGGTCACGGTCATGGCC
AAACTGGAGCATGCTGGGATTGTGCAACTGGCGGAAACATTCCTGGACAA
CAAGTTCATTGTCATGGTGATGGAATACGTTGCGATGGGGGAGCTGCTGG
AGCATCTGGTGAAGGTGCCGGACCTGTGCGAGGCTGACATCGTGCAGTAC
CTCGCCCAGCTGCTAGGGGCGCTGCAGTACATCCACAGCAAGGACATCGT
CCATTTGGACAAGCACCAGCCTGTATTTGACGCCAGGACGGGGGAGTCCA
GCCTGACGGTTCAGAGCGTGTCCCTGAGGGACATGGGGCAGTACCAGGTC
AAGGCAGAGAACCAGCACGGCGCCATGGCCTGCTCCGTGTGCCTCGGACT
TGCAGAGTCTCCCCAGTTTGAGGACATCATGGAGGATGTGGAGATGTATG
TGGGGGAGACGGGTCGCCTGGAGGTCAGACTGTTCGGCAAACCGTTCCCC
GACATCACATGGCTAAAGGGTACGGAGGAACTTCCTAAGGAGAAGCGCAT
CACCAGAACCCGGAGCGATGAAGAGGTGGTTCTGACCATCAACTCCGCTG
TCCTGTCTGACACAGGAGTCTACACCTGCACCGCTAAGAACAGAGCAGGG
GAGGTGTCCTGCAAGGCACAGGTCACTGTGTCTCCAGTGCCCGAGTCCAC
AGATGCAGAAGACGAGGAAACCTGCTGGACAAAAATCCACACAATCAGGG
AGCAGTACAGGATACACGAGGAGCTCGGCAAAGGTGCCTTTGGGATCATC
AAGCGAGTGACCCACCGCAAAACGGGGAAGAAATTTGCCGCCAAGTACAT
CCGGTACAAGCCCCACCGCAAGGCCGACCTCCAGCGGGAGGTCACGGTCA
TGGCCAAACTGGAGCATGCTGGGATTGTGCAACTGGCGGAAACATTCCTG
GACAACAAGTTCATTGTCATGGTGATGGAATACGTTGCGATGGGGGAGCT
GCTGGAGCATCTGGTGAAGGTGCCGGACCTGTGCGAGGCTGACATCGTGC
AGTACCTCGCCCAGCTGCTAGGGGCGCTGCAGTACATCCACAGCAAGGAC
ATCGTCCATTTGGACAAGCACCAGCCTGTATTTGACGCCAGGACGGGGGA
GTCCAGCCTGACGGTTCAGAGCGTGTCCCTGAGGGACATGGGGCAGTACC
AGGTCAAGGCAGAGAACCAGCACGGCGCCATGGCCTGCTCCGTGTGCCTC
GGACTTGCAGAGTCTCCCCAGTTTGAGGACATCATGGAGGATGTGGAGAT
GTATGTGGGGGAGACGGGTCGCCTGGAGGTCAGACTGTTCGGCAAACCGT
TCCCCGACATCACATGGCTAAAGGGTACGGAGGAACTTCCTAAGGAGAAG
CGCATCACCAGAACCCGGAGCGATGAAGAGGTGGTTCTGACCATCAACTC
CGCTGTCCTGTCTGACACAGGAGTCTACACCTGCACCGCTAAGAACAGAG
CAGGGGAGGTGTCCTGCAAGGCACAGGTCACTGTGTCTCCAGTGCCCGAG
TCCACAGATGCAGAAGACGAGGAAACCTGCTGGACAAAAATCCACACAAT
CAGGGAGCAGTACAGGATACACGAGGAGCTCGGCAAAGGTGCCTTTGGGA
TCATCAAGCGAGTGACCCACCGCAAAACGGGGAAGAAATTTGCCGCCAAG
TACATCCGGTACAAGCCCCACCGCAAGGCCGACCTCCAGCGGGAGGTCAC
GGTCATGGCCAAACTGGAGCATGCTGGGATTGTGCAACTGGCGGAAACAT
TCCTGGACAACAAGTTCATTGTCATGGTGATGGAATACGTTGCGATGGGG
GAGCTGCTGGAGCATCTGGTGAAGGTGCCGGACCTGTGCGAGGCTGACAT
CGTGCAGTACCTCGCCCAGCTGCTAGGGGCGCTGCAGTACATCCACAGCA
AGGACATCGTCCATTTGGACAAGCACCAGCCTGTATTTGACGCCAGGACG
GGGGAGTCCAGCCTGACGGTTCAGAGCGTGTCCCTGAGGGACATGGGGCA
GTACCAGGTCAAGGCAGAGAACCAGCACGGCGCCATGGCCTGCTCCGTGT
GCCTCGGACTTGCAGAGTCTCCCCAGTTTGAGGACATCATGGAGGATGTG
GAGATGTATGTGGGGGAGACGGGTCGCCTGGAGGTCAGACTGTTCGGCAA
ACCGTTCCCCGACATCACATGGCTAAAGGGTACGGAGGAACTTCCTAAGG
AGAAGCGCATCACCAGAACCCGGAGCGATGAAGAGGTGGTTCTGACCATC
AACTCCGCTGTCCTGTCTGACACAGGAGTCTACACCTGCACCGCTAAGAA
CAGAGCAGGGGAGGTGTCCTGCAAGGCACAGGTCACTGTGTCTCCAGTGC
CCGAGTCCACAGATGCAGAAGACGAGGAAACCTGCTGGACAAAAATCCAC
ACAATCAGGGAGCAGTACAGGATACACGAGGAGCTCGGCAAAGGTGCCTT
TGGGATCATCAAGCGAGTGACCCACCGCAAAACGGGGAAGAAATTTGCCG
CCAAGTACATCCGGTACAAGCCCCACCGCAAGGCCGACCTCCAGCGGGAG
GTCACGGTCATGGCCAAACTGGAGCATGCTGGGATTGTGCAACTGGCGGA
AACATTCCTGGACAACAAGTTCATTGTCATGGTGATGGAATACGTTGCGA
TGGGGGAGCTGCTGGAGCATCTGGTGAAGGTGCCGGACCTGTGCGAGGCT
GACATCGTGCAGTACCTCGCCCAGCTGCTAGGGGCGCTGCAGTACATCCA
CAGCAAGGACATCGTCCATTTGGACAAGCACCAGCCTGTATTTGACGCCA
GGACGGGGGAGTCCAGCCTGACGGTTCAGAGCGTGTCCCTGAGGGACATG
GGGCAGTACCAGGTCAAGGCAGAGAACCAGCACGGCGCCATGGCCTGCTC
CGTGTGCCTCGGACTTGCAGAGTCTCCCCAGTTTGAGGACATCATGGAGG
ATGTGGAGATGTATGTGGGGGAGACGGGTCGCCTGGAGGTCAGACTGTTC
GGCAAACCGTTCCCCGACATCACATGGCTAAAGGGTACGGAGGAACTTCC
TAAGGAGAAGCGCATCACCAGAACCCGGAGCGATGAAGAGGTGGTTCTGA
CCATCAACTCCGCTGTCCTGTCTGACACAGGAGTCTACACCTGCACCGCT
AAGAACAGAGCAGGGGAGGTGTCCTGCAAGGCACAGGTCACTGTGTCTCC
AGTGCCCGAGTCCACAGATGCAGAAGACGAGGAAACCTGCTGGACAAAAA
TCCACACAATCAGGGAGCAGTACAGGATACACGAGGAGCTCGGCAAAGGT
GCCTTTGGGATCATCAAGCGAGTGACCCACCGCAAAACGGGGAAGAAATT
TGCCGCCAAGTACATCCGGTACAAGCCCCACCGCAAGGCCGACCTCCAGC
GGGAGGTCACGGTCATGGCCAAACTGGAGCATGCTGGGATTGTGCAACTG
GCGGAAACATTCCTGGACAACAAGTTCATTGTCATGGTGATGGAATACGT
TGCGATGGGGGAGCTGCTGGAGCATCTGGTGAAGGTGCCGGACCTGTGCG
AGGCTGACATCGTGCAGTACCTCGCCCAGCTGCTAGGGGCGCTGCAGTAC
ATCCACAGCAAGGACATCGTCCATTTGGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000008 | genome | Sc0000008:5972121..5976231 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96408_cuf8 |
| Biotype | protein_coding |
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