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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96405_cuf5 >transcript:BL96405_cuf5-protein ID=transcript:BL96405_cuf5-protein|Name=transcript:BL96405_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=276bp
TCRAINSVDVVSCSAELRVEEELTDEEGEPMVHPEFQQKIKPLEVAEDDP
ARMDCKVTGVPEPEVTWYKDGVEITQDPEYQFLFEDEESMCLIVPVASKK
HEGLYSCLAGNKLGQVACYARLTVKEKSRRPAHPGPPSFLTTLADVFAVE
GSQACFTCTVVGNPNPDIEWLLDSRLLKPTQDFNMSFENDMAKLILKTAY
PEDQGLYTCKASNGYGETSCSARLHVSEEYTLDTTHAMPPKFIHTFHDTD
AMEGREVRFDCRIIGIPQPKVAWYLH Run BLAST on NCBI mRNA from alignment at Sc0000008:5955558..5959868+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96405_cuf5 ID=transcript:BL96405_cuf5|Name=transcript:BL96405_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=4311bp|location=Sequence derived from alignment at Sc0000008:5955558..5959868+ (Branchiostoma lanceolatum)
CACCTGCCGCGCCATCAACTCTGTCGACGTCGTGTCTTGCAGCGCAGAGC
TACGTGTGGAGGAAGGTACGGTCTCAGTTAAAGGTTAAAGGTTGAATGTT
AAAGGTTGAATGTCAGGGCTGTACACCTGCCGCACCATCAATTCTGTTGA
TGTCGAGTTACGCGTGGAGGAAAGTACGGTCTGAGTGAAAACTGTCATTA
AGCATACATTCAACGCTCAGCTGCAGCCAGAATAAAGTGTCAGTGCATCT
GCGGACATTGTCCTTGGTACTGAAATGTGGGTTAAAGCCCATTCCGATGA
AGAGTATGTGTGCTGTAGAGAGTTGGTAGACTCCAGTTACAATCACATCC
ATGTAGTTACAATCACATACATGTAGTTACCTTGACTCATTATGTTTTTC
ATCAATTTGGTTGTATTTGTACGGTGTTGTGGGTTTGACAGTATGACTCA
AGAAGTTATGGATGGATTGTTACGAAATTTGGTAAGTGCTCAGGTCTTCA
GATGTCAAAGTCAAGCCAATGGTCCATCTGGAGTTCCAACAGAGGATGTA
GTGATGTGAGGCTTAAGGCTGAATGTTAAGGTTGAATATTAAAAGTTGAA
GGTCAATGTTAAACTTAAAGTTTGAATGTTAAAGGTTAAGTGTTAAAGAT
TAATGTTTTTGTTTTCAGAGCTGACAGACGAGGAAGGTGAGCCGATGGTC
CATCCGGAGTTCCAACAGAAGATCAAGCCACTGGAGGTCGCAGAGGATGA
CCCCGCCAGGATGGACTGTAAGGTCACAGGTGTGCCGGAACCTGAGGTCA
CCTGGTGAGTCACCATCACTGGTAACCTCTCCAATGTCGGTGTGGACTGA
CTTCAACATTGACAAATGTATGGTTAACATCTACTCATTACTCAAACAGC
ACAGTTGCAGAAGTTTCTCTGACTGTAAGGCCACTGAAATGGTTTCAAGA
TGGCACCAGTGAATGTACTGATTTTCACCCAAACCCGAGCAATTAAATCT
GTAACCCTTGTTAGTTTATGTTCCTAGGCAAAAGTATATAATTCATTATA
GGAATCCAACCAAGAATTGGCTCATGTATTTCTGATGAAAAATTGACGTT
TTGTTGATTTTTGTTTATTTCTTTTTGCAAAGCCAACAATGGAGTATAGA
GTAACCAGAACCGACACAAGAACTGGCTCCTTAGACTGCCTTTCACATGT
ACATTTATTATTGTTTGTTGATTTTTGTTTGTTTATTTCCGCAGGTACAA
GGATGGAGTTGAGATCACGCAGGACCCGGAGTACCAGTTCCTGTTTGAGG
ACGAGGAATCGATGTGTCTGATCGTGCCCGTCGCCAGTAAGAAACACGAG
GGGCTCTACAGCTGTCTGGCGGGAAACAAGCTCGGGCAGGTGGCCTGCTA
CGCTAGACTCACCGTCAAGGGTAAGGTTATGACCAGCTTCTTTTGTGCAC
AGTGCTGGCATAAGTTAGTTTAGTTAAAATCCTCCCACACCATTATTGAT
GTATAGGGCGGTGCCCATCTCCATTTCATAGCCCTGGGCCACACTGTGGT
GCAATCACTGTAGCAGAGGGCTAGTCCACTGGCAGTGGAGTGTGTTTAAC
TTCCATACTGTTTCAGAAGTATGTACCATTTTTATGAAGTCTTTGGTATG
ACTCAATGCGCCTCTTGTCCAGAGGTGTCCTTCCTGGGGCTTGAACCCCA
GTCTTTCTGGTCCAAGTAATTTGAACCAGATGTGGTAAGAGACAGAAGCA
CAGACCACTACACCACAGGGACACCCCAGTGCTGGCATAAAGCTGGCATC
AAATTGAGCAGGAAAATGGATTGCATAATGAGTCAAGCTGAAAGGAATAT
TACATTTTTGGCAGCAATACACTGAGGGATTTGTAGGGATCAGCCAATCT
TCACAGGTCACTGAACATTAACTCTTAAGTACAGTAAACTTTTTTTTGTT
CTATCGTCAAGGGTGAGGTCAAAGTTTACAGTCAAACCTGTCTATAAGCT
GGTTCACTGTTTGAACTGCACATGCGCAGTGTGATGCATTGTGGGTAATA
TGTCAAAGTTGATAGCCCCTCAGACATAAGCAAAAAATACACCTGAACAA
GTGCAAGCATAGTCTAGGCATCAAGTGTTTAGAAATTTGCGGCCTTCACC
TGTAACCTCACAGCATACACTTTCAACCTGTTTGTACAGTACTATCCATA
TCTTCAATTCATCAAAGTTAAAACGTTCTAATTTCCGATTCTCTCCAGAG
AAGTCACGTCGGCCGGCCCACCCCGGCCCCCCGTCCTTCCTGACCACGCT
GGCGGACGTGTTCGCGGTGGAGGGGTCGCAGGCGTGCTTCACCTGCACCG
TGGTCGGGAACCCAAACCCCGACATCGAGTGGCTGCTGGACAGCCGCCTG
CTGAAACCCACGCAGGACTTCAACATGTCGTTTGAGAACGACATGGCCAA
GCTGATCCTGAAGACAGCGTACCCAGAGGACCAGGTAGGTATTGTTTTAT
TTCAATTTATCACAAATGTAGCCAATGTTGCTGGACAGCCGCATTCTGAA
ACCCACGCAGGACTTCTCCATGTTGCTTAAGAACAATATCTGATCCTGAA
AACAGCGTACCCAGAGGACCAGGTGGGTCAACAGATCTTACTCAGTGTCA
CTGACAAAAAAGAGGGGATCCCACATGAAACGCTTGACCGTTTCTAGAAT
CTATCCAGTTGCTTCAGAAGCTGTTGCTTGCCGTATATTATTACCTGGAT
GTCAGACCTTCATCAACGGACCAGGTACGTAGTGTAGCGTGCATAGTCCA
GTGGTAAGGGGTCCTGACTCTGGAACTAGAAGCCGTGAGTTTGAATCCCG
CTGGGTCACTCATACAACGTTCAAACGTGCTTCACCTGCACCGTGGTCGG
GAACCCCAACCCCGACATCGAGTGGCTGCTGGACAGCAGACTGCTGAAAC
CCACGCAGGACTTCAACATGTCGTTTGAGAACGATATGGCCAAGCTCATC
CTGAAGACAGCGTACCCAGAGGATCAGGTTGGTTTCGTTTGATTTCAATT
CATCCCAAATGTAGCCAATATTGCTGGACAGCCGCGTTCTGAAACCCTCG
CAGGACTTCTCTATGTTGTTTGAGAACGATATCTGATCCTGAAAACAGCG
TACCCAGAGGACCAGGTGGGTCAACAGATCTTACTCAGTGTCACTGACAA
AATAGAGGGGATCCTACCTGAAACGTTTGACCGTTTCTAATATCTATCCA
GTTGCTTGAGAAGCTGTTGCTTGCCGTATCTTATTACCTGGATGTCTGAC
CTTCATTAACGGACCAGGTAGGTAGTGTAGTGTGCGTAGTCCAGTGGCAA
GGGGTCCTGACTCTGGAACTAGAAGCCCTGAGTTTGAATCCCGCTTGGTC
ACTCATACAACGTTCAAACGTGCTTCACCTGCACCGTGGTCGGGAACCCC
AACCCGGACATCGAGTGGCTGCTGGACAGCCGCCTGCTCAAACCCACGCA
GGACTTCAACATGTCGTTTGAGAACGATATGGCCAAGCTCATCCTGAAGA
CTGCGTACCCAGAGGACCAGGTAGGTAGTGTACGTTGATGAAAGTTAGAC
ATCCAGGTAGTAAGATACGCCAAAAATAATTACTCAAGCAACTGGATAAA
GTTTTGAAACGGTCAGACGTTTCAGACAGCATCCACTATCTTTCGTCAGT
GACTAGGTAGTGTAGCCAATGTTGCAGTGCAGGCAATGTCCTTGGTGCTG
AAAGCCAGGTTACAATAACCCTGTAAATGCTGTATTTCATGTCTGTCTTC
TCTATCACTACCAGGGGTAGAATAGCTCTTCAGTTCAAGATCACTTTCAC
TTTTTTTCCCTTTCACTTTTTTCCCAGGCCTTTACTTTTGCTTTTTTTTG
CCTTTCACTTTCAATTGTCTTTTTTTTTCACTTTCACTTTTCACTTTCCA
TTGGCACTTTTTTCACTTTCACTTTTCACTTTCAATTTTTTCACTTTCAC
TTTTCACTTTCAATTTTTTCACTTTCACTTTTCACTTTCAATTTTTTCAC
TTTCACTTTTCACTTTCAATTTTTTTTACTTTCCCTTTCCTCCAGGGGTT
GTACACGTGCAAGGCGAGTAACGGTTATGGCGAGACGTCGTGCAGCGCCC
GGCTCCACGTGTCTGAGGAGTACACGCTGGACACGACGCACGCCATGCCG
CCCAAGTTCATCCACACATTCCACGACACGGACGCCATGGAGGGCAGGGA
GGTGCGCTTCGACTGTCGGATCATCGGGATCCCGCAGCCGAAGGTCGCTT
GGTACCTGCAC Coding sequence (CDS) from alignment at Sc0000008:5955558..5959868+ >transcript:BL96405_cuf5 ID=transcript:BL96405_cuf5|Name=transcript:BL96405_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=4968bp|location=Sequence derived from alignment at Sc0000008:5955558..5959868+ (Branchiostoma lanceolatum)
ACCTGCCGCGCCATCAACTCTGTCGACGTCGTGTCTTGCAGCGCAGAGCT
ACGTGTGGAGGAAGAGCTGACAGACGAGGAAGGTGAGCCGATGGTCCATC
CGGAGTTCCAACAGAAGATCAAGCCACTGGAGGTCGCAGAGGATGACCCC
GCCAGGATGGACTGTAAGGTCACAGGTGTGCCGGAACCTGAGGTCACCTG
GTACAAGGATGGAGTTGAGATCACGCAGGACCCGGAGTACCAGTTCCTGT
TTGAGGACGAGGAATCGATGTGTCTGATCGTGCCCGTCGCCAGTAAGAAA
CACGAGGGGCTCTACAGCTGTCTGGCGGGAAACAAGCTCGGGCAGGTGGC
CTGCTACGCTAGACTCACCGTCAAGGAGAAGTCACGTCGGCCGGCCCACC
CCGGCCCCCCGTCCTTCCTGACCACGCTGGCGGACGTGTTCGCGGTGGAG
GGGTCGCAGGCGTGCTTCACCTGCACCGTGGTCGGGAACCCAAACCCCGA
CATCGAGTGGCTGCTGGACAGCCGCCTGCTCAAACCCACGCAGGACTTCA
ACATGTCGTTTGAGAACGATATGGCCAAGCTCATCCTGAAGACTGCGTAC
CCAGAGGACCAGGGGTTGTACACGTGCAAGGCGAGTAACGGTTATGGCGA
GACGTCGTGCAGCGCCCGGCTCCACGTGTCTGAGGAGTACACGCTGGACA
CGACGCACGCCATGCCGCCCAAGTTCATCCACACATTCCACGACACGGAC
GCCATGGAGGGCAGGGAGGTGCGCTTCGACTGTCGGATCATCGGGATCCC
GCAGCCGAAGGTCGCTTGGTACCTGCACACCTGCCGCGCCATCAACTCTG
TCGACGTCGTGTCTTGCAGCGCAGAGCTACGTGTGGAGGAAGAGCTGACA
GACGAGGAAGGTGAGCCGATGGTCCATCCGGAGTTCCAACAGAAGATCAA
GCCACTGGAGGTCGCAGAGGATGACCCCGCCAGGATGGACTGTAAGGTCA
CAGGTGTGCCGGAACCTGAGGTCACCTGGTACAAGGATGGAGTTGAGATC
ACGCAGGACCCGGAGTACCAGTTCCTGTTTGAGGACGAGGAATCGATGTG
TCTGATCGTGCCCGTCGCCAGTAAGAAACACGAGGGGCTCTACAGCTGTC
TGGCGGGAAACAAGCTCGGGCAGGTGGCCTGCTACGCTAGACTCACCGTC
AAGGAGAAGTCACGTCGGCCGGCCCACCCCGGCCCCCCGTCCTTCCTGAC
CACGCTGGCGGACGTGTTCGCGGTGGAGGGGTCGCAGGCGTGCTTCACCT
GCACCGTGGTCGGGAACCCAAACCCCGACATCGAGTGGCTGCTGGACAGC
CGCCTGCTCAAACCCACGCAGGACTTCAACATGTCGTTTGAGAACGATAT
GGCCAAGCTCATCCTGAAGACTGCGTACCCAGAGGACCAGGGGTTGTACA
CGTGCAAGGCGAGTAACGGTTATGGCGAGACGTCGTGCAGCGCCCGGCTC
CACGTGTCTGAGGAGTACACGCTGGACACGACGCACGCCATGCCGCCCAA
GTTCATCCACACATTCCACGACACGGACGCCATGGAGGGCAGGGAGGTGC
GCTTCGACTGTCGGATCATCGGGATCCCGCAGCCGAAGGTCGCTTGGTAC
CTGCACACCTGCCGCGCCATCAACTCTGTCGACGTCGTGTCTTGCAGCGC
AGAGCTACGTGTGGAGGAAGAGCTGACAGACGAGGAAGGTGAGCCGATGG
TCCATCCGGAGTTCCAACAGAAGATCAAGCCACTGGAGGTCGCAGAGGAT
GACCCCGCCAGGATGGACTGTAAGGTCACAGGTGTGCCGGAACCTGAGGT
CACCTGGTACAAGGATGGAGTTGAGATCACGCAGGACCCGGAGTACCAGT
TCCTGTTTGAGGACGAGGAATCGATGTGTCTGATCGTGCCCGTCGCCAGT
AAGAAACACGAGGGGCTCTACAGCTGTCTGGCGGGAAACAAGCTCGGGCA
GGTGGCCTGCTACGCTAGACTCACCGTCAAGGAGAAGTCACGTCGGCCGG
CCCACCCCGGCCCCCCGTCCTTCCTGACCACGCTGGCGGACGTGTTCGCG
GTGGAGGGGTCGCAGGCGTGCTTCACCTGCACCGTGGTCGGGAACCCAAA
CCCCGACATCGAGTGGCTGCTGGACAGCCGCCTGCTCAAACCCACGCAGG
ACTTCAACATGTCGTTTGAGAACGATATGGCCAAGCTCATCCTGAAGACT
GCGTACCCAGAGGACCAGGGGTTGTACACGTGCAAGGCGAGTAACGGTTA
TGGCGAGACGTCGTGCAGCGCCCGGCTCCACGTGTCTGAGGAGTACACGC
TGGACACGACGCACGCCATGCCGCCCAAGTTCATCCACACATTCCACGAC
ACGGACGCCATGGAGGGCAGGGAGGTGCGCTTCGACTGTCGGATCATCGG
GATCCCGCAGCCGAAGGTCGCTTGGTACCTGCACACCTGCCGCGCCATCA
ACTCTGTCGACGTCGTGTCTTGCAGCGCAGAGCTACGTGTGGAGGAAGAG
CTGACAGACGAGGAAGGTGAGCCGATGGTCCATCCGGAGTTCCAACAGAA
GATCAAGCCACTGGAGGTCGCAGAGGATGACCCCGCCAGGATGGACTGTA
AGGTCACAGGTGTGCCGGAACCTGAGGTCACCTGGTACAAGGATGGAGTT
GAGATCACGCAGGACCCGGAGTACCAGTTCCTGTTTGAGGACGAGGAATC
GATGTGTCTGATCGTGCCCGTCGCCAGTAAGAAACACGAGGGGCTCTACA
GCTGTCTGGCGGGAAACAAGCTCGGGCAGGTGGCCTGCTACGCTAGACTC
ACCGTCAAGGAGAAGTCACGTCGGCCGGCCCACCCCGGCCCCCCGTCCTT
CCTGACCACGCTGGCGGACGTGTTCGCGGTGGAGGGGTCGCAGGCGTGCT
TCACCTGCACCGTGGTCGGGAACCCAAACCCCGACATCGAGTGGCTGCTG
GACAGCCGCCTGCTCAAACCCACGCAGGACTTCAACATGTCGTTTGAGAA
CGATATGGCCAAGCTCATCCTGAAGACTGCGTACCCAGAGGACCAGGGGT
TGTACACGTGCAAGGCGAGTAACGGTTATGGCGAGACGTCGTGCAGCGCC
CGGCTCCACGTGTCTGAGGAGTACACGCTGGACACGACGCACGCCATGCC
GCCCAAGTTCATCCACACATTCCACGACACGGACGCCATGGAGGGCAGGG
AGGTGCGCTTCGACTGTCGGATCATCGGGATCCCGCAGCCGAAGGTCGCT
TGGTACCTGCACACCTGCCGCGCCATCAACTCTGTCGACGTCGTGTCTTG
CAGCGCAGAGCTACGTGTGGAGGAAGAGCTGACAGACGAGGAAGGTGAGC
CGATGGTCCATCCGGAGTTCCAACAGAAGATCAAGCCACTGGAGGTCGCA
GAGGATGACCCCGCCAGGATGGACTGTAAGGTCACAGGTGTGCCGGAACC
TGAGGTCACCTGGTACAAGGATGGAGTTGAGATCACGCAGGACCCGGAGT
ACCAGTTCCTGTTTGAGGACGAGGAATCGATGTGTCTGATCGTGCCCGTC
GCCAGTAAGAAACACGAGGGGCTCTACAGCTGTCTGGCGGGAAACAAGCT
CGGGCAGGTGGCCTGCTACGCTAGACTCACCGTCAAGGAGAAGTCACGTC
GGCCGGCCCACCCCGGCCCCCCGTCCTTCCTGACCACGCTGGCGGACGTG
TTCGCGGTGGAGGGGTCGCAGGCGTGCTTCACCTGCACCGTGGTCGGGAA
CCCAAACCCCGACATCGAGTGGCTGCTGGACAGCCGCCTGCTCAAACCCA
CGCAGGACTTCAACATGTCGTTTGAGAACGATATGGCCAAGCTCATCCTG
AAGACTGCGTACCCAGAGGACCAGGGGTTGTACACGTGCAAGGCGAGTAA
CGGTTATGGCGAGACGTCGTGCAGCGCCCGGCTCCACGTGTCTGAGGAGT
ACACGCTGGACACGACGCACGCCATGCCGCCCAAGTTCATCCACACATTC
CACGACACGGACGCCATGGAGGGCAGGGAGGTGCGCTTCGACTGTCGGAT
CATCGGGATCCCGCAGCCGAAGGTCGCTTGGTACCTGCACACCTGCCGCG
CCATCAACTCTGTCGACGTCGTGTCTTGCAGCGCAGAGCTACGTGTGGAG
GAAGAGCTGACAGACGAGGAAGGTGAGCCGATGGTCCATCCGGAGTTCCA
ACAGAAGATCAAGCCACTGGAGGTCGCAGAGGATGACCCCGCCAGGATGG
ACTGTAAGGTCACAGGTGTGCCGGAACCTGAGGTCACCTGGTACAAGGAT
GGAGTTGAGATCACGCAGGACCCGGAGTACCAGTTCCTGTTTGAGGACGA
GGAATCGATGTGTCTGATCGTGCCCGTCGCCAGTAAGAAACACGAGGGGC
TCTACAGCTGTCTGGCGGGAAACAAGCTCGGGCAGGTGGCCTGCTACGCT
AGACTCACCGTCAAGGAGAAGTCACGTCGGCCGGCCCACCCCGGCCCCCC
GTCCTTCCTGACCACGCTGGCGGACGTGTTCGCGGTGGAGGGGTCGCAGG
CGTGCTTCACCTGCACCGTGGTCGGGAACCCAAACCCCGACATCGAGTGG
CTGCTGGACAGCCGCCTGCTCAAACCCACGCAGGACTTCAACATGTCGTT
TGAGAACGATATGGCCAAGCTCATCCTGAAGACTGCGTACCCAGAGGACC
AGGGGTTGTACACGTGCAAGGCGAGTAACGGTTATGGCGAGACGTCGTGC
AGCGCCCGGCTCCACGTGTCTGAGGAGTACACGCTGGACACGACGCACGC
CATGCCGCCCAAGTTCATCCACACATTCCACGACACGGACGCCATGGAGG
GCAGGGAGGTGCGCTTCGACTGTCGGATCATCGGGATCCCGCAGCCGAAG
GTCGCTTGGTACCTGCAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000008 | genome | Sc0000008:5955558..5959868 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96405_cuf5 |
| Biotype | protein_coding |
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