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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96389_cuf68 >transcript:BL96389_cuf68-protein ID=transcript:BL96389_cuf68-protein|Name=transcript:BL96389_cuf68|organism=Branchiostoma lanceolatum|type=polypeptide|length=283bp
KVVARDAIEPPGPPSAPEITEICKDAIGFAWEPPKYDGGSAITGYIIERR
EKQSRRWIKLNREAVKKREYRSEGLLEGFEYDFRVRAVNQAGTGDPSEPS
VPVRAEEQISPPRNLRVIDYSRSFVTIAWEPPEFDAGSKILGYFIWRRNI
EFKGWAPCNEKIWTDRRFHIKALTENKKYLFMVKAKNAAGMISLPATIGP
VETKDEFEPPKILLSETFKDVITVKAGETVSVNINFTGRPRPRATWEKDD
STLTLRDRIRVETTPENSLLTLEKTERADTGKY Run BLAST on NCBI mRNA from alignment at Sc0000008:5566505..5570546+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96389_cuf68 ID=transcript:BL96389_cuf68|Name=transcript:BL96389_cuf68|organism=Branchiostoma lanceolatum|type=mRNA|length=4042bp|location=Sequence derived from alignment at Sc0000008:5566505..5570546+ (Branchiostoma lanceolatum)
AGAAGGTGGTGGCCAGGGACGCTATTGGTGAGTACAAGGGAGTCCCGTTA
TTTTATAGCTGTCTGAACGGTTGATGATATCACAGGTTGCATAGTTGAAG
GGCCAGGGACGCTATTGGTGAGCACAAGGGAGTCCCGTTATTTTATAGCT
GTCTGAACGGTTGATGATATCACAGGTTGCATAGTTGAAGGGCCAGGGAC
GCTATTGGTGAGTACAAGGGAGTCCCCAGTTGTCTGAAACATTGAGTTGG
CTGTATGATTAAAGGGCATAGAAACAACCCTTAGAAAATCGTGGATGACA
CAACATTTTTAGAAGCCCATGCTTGTATATGTTGCAAAGAAAAATCATGG
ATAAAAATGTAGCCTTAATGAATGAATGAAGACTTCTGGTTGAGTTGTTC
TTACATGTAATTACAGTCCAACATGTACTCAGAACAACCTTGGCATCACG
ACATTCAAGACATTATTTTCTGGTCTGTTACAATACTTTACCCATCACCC
TAAGTGTTACAAATTCTGCCTATACAGTGAAGTGAGCACCTGGCTATTGT
GATCATTTATGCTAGGGTCACATTTCCAATCCGGGGCCCAGCCGGGCAGT
CTTTTGGAACAAAAATTATGATATAAAAAGACAACCAAAACACTAAACGT
ACGCAAAATTATCTAAGAGCATAGCTTGTGCAAATTTATTGACATACACT
TTGATTTTTCGTTTCCGCAAACAGCCCGGCCGGGCCCCGGTTAGGAAATG
AGACCTTAGCATTACCAGTAGTTTTAGACAGGTTTGACCATAAATGAACA
TACTTGTAACCATCGTCACCGTCTCTTGCCCCACAGAGCCCCCAGGCCCT
CCCTCTGCCCCTGAGATCACGGAGATCTGCAAGGACGCGATCGGGTTCGC
CTGGGAGCCGCCCAAGTACGACGGCGGCAGCGCCATCACCGGCTACATCA
TCGAGCGGCGCGAGAAGCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAG
GCCGTCAAGAAGCGCGAGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGA
GTACGACTTCCGGGTCCGTGCAGTCAACCAGGTGTGTACATCATATTAAT
CCTAAGATGTATGTAGGGATCTTCTGTCACAAGGTATATAAGACTCTAAG
AAACAAACAAATCAAGATTAGTCAGATTTGGGGCTGAATAGCAGTGTCTT
CAGGAATATGTTTAGACTGGACATCTTCTGTCTATATAAAACTCTAAAAA
TAGTATGTGTGCCAAGCAACAAAAAAACAACAAACAAGATAAGTGATATA
TACTAGCCTAAGGGTTATCTGTAAACTTTTAATAGAAAGTGAAAAACAAA
GTCAGAGAAAGACAAAATGGAATTCCGATGTTCACAGTTTTATTGAATTT
CACTTGAACTGCAATACGTCTTGTTTCTGAGGTGCTTAACTCAGAATTGC
TTCTATGATAAGAACACATGACAGTTACCAGTCAGAAACCACTGGTAAGA
ACCGAACTGACCACTTGTGTGTTTCCGCAGGCTGGCACCGGAGACCCCAG
CGAGCCGTCCGTGCCTGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCA
ACCTGCGCGTCATCGACTACTCCCGATCCTTCGTCACCATCGCCTGGGAG
CCGCCGGAGTTCGACGCTGGCAGCAAGATCCTCGGCTACTTCATATGGAG
GTGCGTACACTTGTTTTGATGAGATTTAACTTTTCCCTCGGATATAAATT
CTTAAGAATATCACTCAGACTATGAGTGAGTGAAACGTTTTTGAAACATA
GGAACTTTAGTCCAGAATGACCAAATATGACACACACTGTTACGACATGA
AATAACACATATATGTTAGAAAATAGCCTGAAAGCTAAGTGCATATAAAT
TTTGAACTAAGTAAAGGTACACTGTATCACAATGGATTTAAGGGTGCAAT
TCCAATTGTACAATTTCGTGGGAAACACATACAAATATGCCTGTATCAAG
GTGACTTATCCATTTTGTTTTTCCCCCACAGGCGTAACATTGAGTTCAAG
GGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCGGTTCCACAT
CAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCAAGGCCAAGA
ACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCGGTGGAGACC
AAGGACGAGTTCGGTATGTCTGGATACAAATGCTTCTTAATGCGTCTTAG
GCGGCTAAATACTTCTTAGTGAATCGTTTAGAATCTGCGAAGCATGCCTC
TTTATTTGTGGCTCAGCTGCTTGACTGGTCTTTGTACAGCTATGTCATAT
GGTATATTCCTACAGATAGATACAAATACAATGGAGGTATTTGCCATATT
CATAAAACAATACTCGTACACTAAACGAATAGTCGTAAGGAATTATCTAT
CTTTTATAATCATAAACTTTAAGGTACAAATGGTCAAAAGAAGGTATCAT
TTTAGCCTTTTTCTTTGATCTTGCTACCGTCTATGTCTACCATTCAAACG
TACCTTTTTCGCACGAGAATAATTGTAACCTTTCTGTACCCCCCCTTCAG
AGCCTCCCAAGATCCTGCTGTCGGAGACGTTTAAGGACGTCATCACCGTG
AAGGCAGGTGAGACGGTCAGCGTCAACATCAACTTCACGGGCCGACCGCG
CCCCAGGGCCACCTGGGAGAAGGACGACAGCACGCTCACTCTCAGGGTAA
GGACAGGTCTCACGTCTTTAAGAACAAGTCTTAGATTTTAAGGACAAGTC
TTAGATATTAAGGACAGGTCTCACGTCTTTAAGGACAAGTCTAAGGTATT
TAAGGACATGTCTAAGGTCTTTAAGGACAAGTATTAGTTTTTAAGACAAT
TCTTTAGTCTTTCAGGACAAGTCTTAGTCTTTAAGGACAGGTCTCACGTC
TTTAAGGACAAGTCTAAGGTCTTTAAGGACAAGTCTAAGGTCTTTAAGGA
CAAGTCTTAGATTTTAAGGACAAGTCCTACGTCTTTAAGACAAGTCTTAA
GTGTTCAAAGATATGTCTTAAGTGTTTAGGAAGATGGAGCCTGACCTTTA
ACATGGAAGGGAAGATTAAGCCTCTGGTGCGACTGATACTACCTTAAACA
ATGTTCGCCAATGTCTTATGCCAGTATCTTTGGTTTCTTTGGCAAGTTGC
ACTTCTTACAACTCATACTGGTTTTGGCATGATTATGATATAATATAAAT
TGACCCAAAGATGGCTTATTAAAACTGCAAGGATGAGAGATGAATGTGAC
CAATTGGCATCAAATTGCATGTTCTTTATGTTTTCATGTCCTTTTTTACT
TCGAGGATTTTTTTACTGATGCGGATGAATACTGTGAAATTCTAGAGCCT
TCTGAGTTGATGTAATCTTTGAAACTCATACTGGTTTTGACATGATCTTG
ATATACAGTAATATGAAATGACCTAAAAATGACCTAAAAACGACCTATAA
AAACTGCAAGGATGAGACACAGATGATAAATGTGACCAATTGACATTAAA
TGTTCTTTTTTATAAAGATTATTGTTTACTGATGCTAATGAATGCTGTAA
AATTCTAGAGTCTTCTGAGTTAAGTTCTGATAGCGTGCGTAGTCCAGTGG
TTAGCGATCTTGCCTCTGGAACTAGAAGCCCCGGGTTCGATCCCGGCTGT
GTTGCTCACCCGACATGCACGCTACCAGAAAGGATCGCAGTCCTTAGGAC
GGGACGTTAAGCCGTGGTCTACTGTTCATTGTGTTATTCGAAAAGAGCTT
GGGGAATTTTCCCGGTACAAGGAACCTGTAAATACTGTACATAGCGTCTG
TCTTCTTCTCTGTCACGACCAGTGGAATATTAGCTCTTCAATGAGCTAAA
ACTGGATCGAGATTACTTTCCTTTTTCCTGATATGATTTTTTAACCCCTG
TTCCCTTAGGACCGTATCCGCGTGGAGACGACTCCCGAGAACAGCCTGCT
GACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTACAC Coding sequence (CDS) from alignment at Sc0000008:5566505..5570546+ >transcript:BL96389_cuf68 ID=transcript:BL96389_cuf68|Name=transcript:BL96389_cuf68|organism=Branchiostoma lanceolatum|type=CDS|length=5094bp|location=Sequence derived from alignment at Sc0000008:5566505..5570546+ (Branchiostoma lanceolatum)
AAGGTGGTGGCCAGGGACGCTATTGAGCCCCCAGGCCCTCCCTCTGCCCC
TGAGATCACGGAGATCTGCAAGGACGCGATCGGGTTCGCCTGGGAGCCGC
CCAAGTACGACGGCGGCAGCGCCATCACCGGCTACATCATCGAGCGGCGC
GAGAAGCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAGGCCGTCAAGAA
GCGCGAGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGAGTACGACTTCC
GGGTCCGTGCAGTCAACCAGGCTGGCACCGGAGACCCCAGCGAGCCGTCC
GTGCCTGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCAACCTGCGCGT
CATCGACTACTCCCGATCCTTCGTCACCATCGCCTGGGAGCCGCCGGAGT
TCGACGCTGGCAGCAAGATCCTCGGCTACTTCATATGGAGGCGTAACATT
GAGTTCAAGGGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCG
GTTCCACATCAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCA
AGGCCAAGAACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCG
GTGGAGACCAAGGACGAGTTCGAGCCTCCCAAGATCCTGCTGTCGGAGAC
GTTTAAGGACGTCATCACCGTGAAGGCAGGTGAGACGGTCAGCGTCAACA
TCAACTTCACGGGCCGACCGCGCCCCAGGGCCACCTGGGAGAAGGACGAC
AGCACGCTCACTCTCAGGGACCGTATCCGCGTGGAGACGACTCCCGAGAA
CAGCCTGCTGACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTACA
AGGTGGTGGCCAGGGACGCTATTGAGCCCCCAGGCCCTCCCTCTGCCCCT
GAGATCACGGAGATCTGCAAGGACGCGATCGGGTTCGCCTGGGAGCCGCC
CAAGTACGACGGCGGCAGCGCCATCACCGGCTACATCATCGAGCGGCGCG
AGAAGCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAGGCCGTCAAGAAG
CGCGAGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGAGTACGACTTCCG
GGTCCGTGCAGTCAACCAGGCTGGCACCGGAGACCCCAGCGAGCCGTCCG
TGCCTGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCAACCTGCGCGTC
ATCGACTACTCCCGATCCTTCGTCACCATCGCCTGGGAGCCGCCGGAGTT
CGACGCTGGCAGCAAGATCCTCGGCTACTTCATATGGAGGCGTAACATTG
AGTTCAAGGGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCGG
TTCCACATCAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCAA
GGCCAAGAACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCGG
TGGAGACCAAGGACGAGTTCGAGCCTCCCAAGATCCTGCTGTCGGAGACG
TTTAAGGACGTCATCACCGTGAAGGCAGGTGAGACGGTCAGCGTCAACAT
CAACTTCACGGGCCGACCGCGCCCCAGGGCCACCTGGGAGAAGGACGACA
GCACGCTCACTCTCAGGGACCGTATCCGCGTGGAGACGACTCCCGAGAAC
AGCCTGCTGACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTACAA
GGTGGTGGCCAGGGACGCTATTGAGCCCCCAGGCCCTCCCTCTGCCCCTG
AGATCACGGAGATCTGCAAGGACGCGATCGGGTTCGCCTGGGAGCCGCCC
AAGTACGACGGCGGCAGCGCCATCACCGGCTACATCATCGAGCGGCGCGA
GAAGCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAGGCCGTCAAGAAGC
GCGAGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGAGTACGACTTCCGG
GTCCGTGCAGTCAACCAGGCTGGCACCGGAGACCCCAGCGAGCCGTCCGT
GCCTGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCAACCTGCGCGTCA
TCGACTACTCCCGATCCTTCGTCACCATCGCCTGGGAGCCGCCGGAGTTC
GACGCTGGCAGCAAGATCCTCGGCTACTTCATATGGAGGCGTAACATTGA
GTTCAAGGGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCGGT
TCCACATCAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCAAG
GCCAAGAACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCGGT
GGAGACCAAGGACGAGTTCGAGCCTCCCAAGATCCTGCTGTCGGAGACGT
TTAAGGACGTCATCACCGTGAAGGCAGGTGAGACGGTCAGCGTCAACATC
AACTTCACGGGCCGACCGCGCCCCAGGGCCACCTGGGAGAAGGACGACAG
CACGCTCACTCTCAGGGACCGTATCCGCGTGGAGACGACTCCCGAGAACA
GCCTGCTGACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTACAAG
GTGGTGGCCAGGGACGCTATTGAGCCCCCAGGCCCTCCCTCTGCCCCTGA
GATCACGGAGATCTGCAAGGACGCGATCGGGTTCGCCTGGGAGCCGCCCA
AGTACGACGGCGGCAGCGCCATCACCGGCTACATCATCGAGCGGCGCGAG
AAGCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAGGCCGTCAAGAAGCG
CGAGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGAGTACGACTTCCGGG
TCCGTGCAGTCAACCAGGCTGGCACCGGAGACCCCAGCGAGCCGTCCGTG
CCTGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCAACCTGCGCGTCAT
CGACTACTCCCGATCCTTCGTCACCATCGCCTGGGAGCCGCCGGAGTTCG
ACGCTGGCAGCAAGATCCTCGGCTACTTCATATGGAGGCGTAACATTGAG
TTCAAGGGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCGGTT
CCACATCAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCAAGG
CCAAGAACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCGGTG
GAGACCAAGGACGAGTTCGAGCCTCCCAAGATCCTGCTGTCGGAGACGTT
TAAGGACGTCATCACCGTGAAGGCAGGTGAGACGGTCAGCGTCAACATCA
ACTTCACGGGCCGACCGCGCCCCAGGGCCACCTGGGAGAAGGACGACAGC
ACGCTCACTCTCAGGGACCGTATCCGCGTGGAGACGACTCCCGAGAACAG
CCTGCTGACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTACAAGG
TGGTGGCCAGGGACGCTATTGAGCCCCCAGGCCCTCCCTCTGCCCCTGAG
ATCACGGAGATCTGCAAGGACGCGATCGGGTTCGCCTGGGAGCCGCCCAA
GTACGACGGCGGCAGCGCCATCACCGGCTACATCATCGAGCGGCGCGAGA
AGCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAGGCCGTCAAGAAGCGC
GAGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGAGTACGACTTCCGGGT
CCGTGCAGTCAACCAGGCTGGCACCGGAGACCCCAGCGAGCCGTCCGTGC
CTGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCAACCTGCGCGTCATC
GACTACTCCCGATCCTTCGTCACCATCGCCTGGGAGCCGCCGGAGTTCGA
CGCTGGCAGCAAGATCCTCGGCTACTTCATATGGAGGCGTAACATTGAGT
TCAAGGGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCGGTTC
CACATCAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCAAGGC
CAAGAACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCGGTGG
AGACCAAGGACGAGTTCGAGCCTCCCAAGATCCTGCTGTCGGAGACGTTT
AAGGACGTCATCACCGTGAAGGCAGGTGAGACGGTCAGCGTCAACATCAA
CTTCACGGGCCGACCGCGCCCCAGGGCCACCTGGGAGAAGGACGACAGCA
CGCTCACTCTCAGGGACCGTATCCGCGTGGAGACGACTCCCGAGAACAGC
CTGCTGACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTACAAGGT
GGTGGCCAGGGACGCTATTGAGCCCCCAGGCCCTCCCTCTGCCCCTGAGA
TCACGGAGATCTGCAAGGACGCGATCGGGTTCGCCTGGGAGCCGCCCAAG
TACGACGGCGGCAGCGCCATCACCGGCTACATCATCGAGCGGCGCGAGAA
GCAGTCCCGCCGCTGGATCAAGCTCAACCGGGAGGCCGTCAAGAAGCGCG
AGTACCGCTCCGAAGGCCTGCTGGAGGGCTTCGAGTACGACTTCCGGGTC
CGTGCAGTCAACCAGGCTGGCACCGGAGACCCCAGCGAGCCGTCCGTGCC
TGTGCGGGCGGAGGAGCAGATCTCCCCGCCGCGCAACCTGCGCGTCATCG
ACTACTCCCGATCCTTCGTCACCATCGCCTGGGAGCCGCCGGAGTTCGAC
GCTGGCAGCAAGATCCTCGGCTACTTCATATGGAGGCGTAACATTGAGTT
CAAGGGATGGGCTCCGTGCAACGAGAAGATTTGGACCGACCGCCGGTTCC
ACATCAAGGCTCTGACGGAGAACAAGAAGTACCTGTTCATGGTCAAGGCC
AAGAACGCCGCGGGCATGATCAGTCTGCCCGCCACAATCGGACCGGTGGA
GACCAAGGACGAGTTCGAGCCTCCCAAGATCCTGCTGTCGGAGACGTTTA
AGGACGTCATCACCGTGAAGGCAGGTGAGACGGTCAGCGTCAACATCAAC
TTCACGGGCCGACCGCGCCCCAGGGCCACCTGGGAGAAGGACGACAGCAC
GCTCACTCTCAGGGACCGTATCCGCGTGGAGACGACTCCCGAGAACAGCC
TGCTGACCCTGGAGAAGACGGAGCGGGCCGACACCGGGAAGTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000008 | genome | Sc0000008:5566505..5570546 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96389_cuf68 |
| Biotype | protein_coding |
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