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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96371_cuf23 >transcript:BL96371_cuf23-protein ID=transcript:BL96371_cuf23-protein|Name=transcript:BL96371_cuf23|organism=Branchiostoma lanceolatum|type=polypeptide|length=366bp
PPLDGNQSQSQLLQGSGWLDENSRAVMVEVILYNPNANLFSVVTFLVEFT
YYGNAFPSAVISTLRLFQTSQILLLALKGVMVLFLFIFVYKEVTFVQTGK
LLMALPVEYLQEVWNWVELLVILAGFSTLGVYFQTQSVIDQVSEPGSHAQ
FSLYRRAAGWAEVYTYVKAALICCVTLKLVRLLRFNKVVQVLFLTIRTSF
KPLAAFMMMAGIVIMAFTQLGSLLFGANLKTYSSIGSSLASICLMTIGSF
DTAELTEVSWIYGPIFFFLFQVTMQFFLMTMFMAILMDTYADVNESAETQ
KLRMMAYMREEIITKKRKMQQTVKNKRKPPDTSRLEIRHVNLRGDLSVYR
KTFDHANNTLEYGAND Run BLAST on NCBI mRNA from alignment at Sc0000035:689744..693066+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96371_cuf23 ID=transcript:BL96371_cuf23|Name=transcript:BL96371_cuf23|organism=Branchiostoma lanceolatum|type=mRNA|length=3323bp|location=Sequence derived from alignment at Sc0000035:689744..693066+ (Branchiostoma lanceolatum)
CTCCTCCCCTTGATGGGAACCAGTCTCAGAGCCAGTTGCTGCAGGGGAGT
GGCTGGCTGGACGAGAACTCTCGGGCCGTCATGGTAGGATTCGGTCCATA
CTTTGAAGTATCCAAAGATGGGTAACAGAAAATGTGCTTATTATTGTAAT
AAGTCAATAATTTGTGATGTTCACAATCTGTGTGTGGATGTACTTGTAAG
TAACACTAATGTAACATAATCCCGGATAGGTGTTTGTCTAATGAAATTAG
TATGAAATTCAATGCTTTTTTTAAAAGCATTCATACTAATTTCGTTAGAC
AAACACCTATTAAAAAAGAGGCTAACAGACTTGCATGATATTTTCTTTGT
TGCATTATACACATTATTATGTTATTCATCTTGACTATATTAAACATGCA
GTTATAGAAAGCAGTTGTTGTGTTAGTGAAACATCTAGCACTATTGGCAG
GTCCTAACATCAGCATTCAATGAAGATTCATTGATAAAACCTTCAACCAT
TCCAATATCTCTACAGGTGGAAGTCATCCTGTACAACCCAAACGCCAACC
TTTTCTCCGTGGTGACGTTCTTAGTGGAGTTTACCTACTACGGGAACGCC
TTCCCCTCGGCCGTGATCTCCACACTCCGCCTCTTCCAGACCTCCCAAAT
CCTTCTACTGGCCCTGAAGGGAGTCATGGTGCTGTTCCTCTTCATCTTCG
TATACAAAGAAGGTAACAACAAAGTGCATTTGTGGAAATTGCTTAGACTC
TGAACATACTGTCCAATGTCTTACTACTTCAGCCTATCCTTTTTGTCATA
ATTTACAATAACCGTTGCACCATTCAAAGTTAAATCCATTCCAATTAGTT
AAATTGGAAGGCTTGTCCAGAGCTACATGTATGGAGGGTAGGGAGTACTG
GAGGGCCATGAAGATCTGTGAAACCTTCACGACAATGAGATGTTGCACCT
TTAACAATGGGTACATGCTACAAACAAGGTAGCAATGCTAACAATACCTT
TTATGCTGTTCCCCCGGGTTGAGAGAAACAAGATTAGCCACAAGAAGGGT
CTTGTGCAGCTTTAGTAACATCAAATGAATTGAAAAAATGCTTTCTTTTC
TCATACAAATATGATATAAATTCATTTTCTCCTCAAGCTATCCTCAGCTG
ACACAGTAAGGACACAGTCATAGTCTCTTTCACATGTCAAGTAACATTTG
TTCAAACAGGGAAGCTGCTCATGGCACTACCAGTCGAGTACCTGCAGGAG
GTGTGGAACTGGGTGGAGCTGCTCGTCATCCTGGCAGGATTCTCCACGCT
GGGCGTGTACTTCCAGACCCAGTCGGTGATCGACCAGGTCAGCGAGCCTG
GCAGCCATGCCCAGTTCTCGTTGTACCGGCGTGCGGCCGGCTGGGCGGAG
GTGTACACCTACGTGAAGGCTGCACTGATCTGCTGTGTCACCCTGAAGCT
GGTTCGTCTGCTCAGGTTCAACAAGGTGACAGCAAATCATCGCTATGGTT
GTGCAACTTTCTATAAGACATTTGGATATTTATAAACCAAACATGTACAT
GCTCTTTCAAGCAACCTAAAAATGACATTATGGTCAGGTGTATTGAAGGT
TTGTGCATTGTGCTGTCAGAGTACTTTCAGTATTTTAACCAGTCCTGTAT
TGTTAATTAACACCAAGGTGGTGCAGGTTCTGTTCCTCACCATCAGAACA
TCCTTCAAACCACTGGCTGCCTTCATGATGATGGCTGGTATTGTCATCAT
GGCATTTACACAGGTAATGGCCATGACATACTTTCATAGTTTTTGTATCC
AAAAGGCAGAATTAAGCTTCTTCTAATTGAAATTGTAGCTTGGATGTTCA
TCTCAAACGTTATTGATATGTACAACAATTGTTTTTCAACAATTTTTTTG
TTATGACAACCTGCAACTGGAAATTTCTTTATTCAGTATTGAGTAGATAC
TGTCATAAGTGGTGATATGCTTCCTATCATTTAAAACAGTAAGGACTGGC
ACCATGTGTTGTGTGTTGTTTAGCTGGGCAGCCTGTTGTTTGGGGCTAAC
CTGAAGACGTACAGCAGCATCGGCAGCAGTCTGGCCTCCATCTGCCTCAT
GACGATCGGCAGTTTCGACACAGCAGAGCTGACAGAAGTGTCGTGGATTT
ATGGACCCATTTTCTTCTTCCTTTTCCAGGTGATGGGTGGAACTGTTCTG
TTCATGTTTCATTGATTATCTAAGTTTGTAATCTGGTTTGTGGATGCCAG
TAATGTTCATGCTACCAACATTAAGACAGATAATGATTGCAAAGATTTTA
TACTGTGATGCTTTGGGTGACTGTATTAAAGATTTCAAAATGAAAATGTT
GTCCCTTGCATAAGACTACTTTACTCATTAAGTGGTCATGATCATTTTCT
TTGCAAGTAATGTAGAGTTCTACCAATAGTTATTTTCATATATAGTATTA
ATAGTATGCGATGACTCTGATGAGGATATTACTAGTACCTAGTTCTTAGT
TGGTGTTACAATTACTGCTGTCTGTGACACATGTAATATCCATGTCTATT
ACAATGACACTGCAGAACTAACCATTCACTGCATATGACTATTGTTTGTA
GGTGACCATGCAGTTTTTCTTGATGACCATGTTTATGGCCATCCTGATGG
ACACCTATGCAGACGTGAATGAAAGCGCAGAGACACAGAAGTTGAGGATG
ATGGCCTACATGCGTGAAGAAATCATCACAAAAAAGAGGAAGATGCAGCA
GACTGTCAAGAACAAAAGGAAACCCCCAGACACCAGCAGGTTGGAAATAC
GACACGTAAACCTGCGAGGAGATCTCAGTGTGTACAGGAAAACCTTTGAC
CATGCCAACAATACACTGGAGTATGGGGCAAATGATTAACAGGTACATGT
ATATGAGTAGCTCTTCCCGTGCAGTTCCTGGTTGTGGAATGTTCAAGTGT
TGACTGTACTACAAATTTCACAGTACGTAAACGTGTATGTTAGAAAAAAC
CTACTCGACCATTTGTATTTTTTCTATCACAAATCTTTTTCTTAGTTCAG
CTGATTTGTAAAAAAATTCAAATTGTTTGGTAATGCCATGGAATTTGTTC
TTCCATTCTTGCAATCAAATAAGGTAATGGAAGTCATTTCAAGGTAAAGG
TCTTTTGGCACAAGTTGCCCTACAATACTGTGATATGTTTACATTTAATA
AAGTGTTAAGAATCATCAAGGTGTGAATAAATGACAGAAGACAGCCAATT
GCTCCTGAAGTCATTTTTTATTAGATACCAGCGCCTGTAAACAAACGGCA
TCATACTGGGTTGAGAAAAGCAG Coding sequence (CDS) from alignment at Sc0000035:689744..693066+ >transcript:BL96371_cuf23 ID=transcript:BL96371_cuf23|Name=transcript:BL96371_cuf23|organism=Branchiostoma lanceolatum|type=CDS|length=6606bp|location=Sequence derived from alignment at Sc0000035:689744..693066+ (Branchiostoma lanceolatum)
CCTCCCCTTGATGGGAACCAGTCTCAGAGCCAGTTGCTGCAGGGGAGTGG
CTGGCTGGACGAGAACTCTCGGGCCGTCATGGTGGAAGTCATCCTGTACA
ACCCAAACGCCAACCTTTTCTCCGTGGTGACGTTCTTAGTGGAGTTTACC
TACTACGGGAACGCCTTCCCCTCGGCCGTGATCTCCACACTCCGCCTCTT
CCAGACCTCCCAAATCCTTCTACTGGCCCTGAAGGGAGTCATGGTGCTGT
TCCTCTTCATCTTCGTATACAAAGAAGTAACATTTGTTCAAACAGGGAAG
CTGCTCATGGCACTACCAGTCGAGTACCTGCAGGAGGTGTGGAACTGGGT
GGAGCTGCTCGTCATCCTGGCAGGATTCTCCACGCTGGGCGTGTACTTCC
AGACCCAGTCGGTGATCGACCAGGTCAGCGAGCCTGGCAGCCATGCCCAG
TTCTCGTTGTACCGGCGTGCGGCCGGCTGGGCGGAGGTGTACACCTACGT
GAAGGCTGCACTGATCTGCTGTGTCACCCTGAAGCTGGTTCGTCTGCTCA
GGTTCAACAAGGTGGTGCAGGTTCTGTTCCTCACCATCAGAACATCCTTC
AAACCACTGGCTGCCTTCATGATGATGGCTGGTATTGTCATCATGGCATT
TACACAGCTGGGCAGCCTGTTGTTTGGGGCTAACCTGAAGACGTACAGCA
GCATCGGCAGCAGTCTGGCCTCCATCTGCCTCATGACGATCGGCAGTTTC
GACACAGCAGAGCTGACAGAAGTGTCGTGGATTTATGGACCCATTTTCTT
CTTCCTTTTCCAGGTGACCATGCAGTTTTTCTTGATGACCATGTTTATGG
CCATCCTGATGGACACCTATGCAGACGTGAATGAAAGCGCAGAGACACAG
AAGTTGAGGATGATGGCCTACATGCGTGAAGAAATCATCACAAAAAAGAG
GAAGATGCAGCAGACTGTCAAGAACAAAAGGAAACCCCCAGACACCAGCA
GGTTGGAAATACGACACGTAAACCTGCGAGGAGATCTCAGTGTGTACAGG
AAAACCTTTGACCATGCCAACAATACACTGGAGTATGGGGCAAATGATTA
ACCTCCCCTTGATGGGAACCAGTCTCAGAGCCAGTTGCTGCAGGGGAGTG
GCTGGCTGGACGAGAACTCTCGGGCCGTCATGGTGGAAGTCATCCTGTAC
AACCCAAACGCCAACCTTTTCTCCGTGGTGACGTTCTTAGTGGAGTTTAC
CTACTACGGGAACGCCTTCCCCTCGGCCGTGATCTCCACACTCCGCCTCT
TCCAGACCTCCCAAATCCTTCTACTGGCCCTGAAGGGAGTCATGGTGCTG
TTCCTCTTCATCTTCGTATACAAAGAAGTAACATTTGTTCAAACAGGGAA
GCTGCTCATGGCACTACCAGTCGAGTACCTGCAGGAGGTGTGGAACTGGG
TGGAGCTGCTCGTCATCCTGGCAGGATTCTCCACGCTGGGCGTGTACTTC
CAGACCCAGTCGGTGATCGACCAGGTCAGCGAGCCTGGCAGCCATGCCCA
GTTCTCGTTGTACCGGCGTGCGGCCGGCTGGGCGGAGGTGTACACCTACG
TGAAGGCTGCACTGATCTGCTGTGTCACCCTGAAGCTGGTTCGTCTGCTC
AGGTTCAACAAGGTGGTGCAGGTTCTGTTCCTCACCATCAGAACATCCTT
CAAACCACTGGCTGCCTTCATGATGATGGCTGGTATTGTCATCATGGCAT
TTACACAGCTGGGCAGCCTGTTGTTTGGGGCTAACCTGAAGACGTACAGC
AGCATCGGCAGCAGTCTGGCCTCCATCTGCCTCATGACGATCGGCAGTTT
CGACACAGCAGAGCTGACAGAAGTGTCGTGGATTTATGGACCCATTTTCT
TCTTCCTTTTCCAGGTGACCATGCAGTTTTTCTTGATGACCATGTTTATG
GCCATCCTGATGGACACCTATGCAGACGTGAATGAAAGCGCAGAGACACA
GAAGTTGAGGATGATGGCCTACATGCGTGAAGAAATCATCACAAAAAAGA
GGAAGATGCAGCAGACTGTCAAGAACAAAAGGAAACCCCCAGACACCAGC
AGGTTGGAAATACGACACGTAAACCTGCGAGGAGATCTCAGTGTGTACAG
GAAAACCTTTGACCATGCCAACAATACACTGGAGTATGGGGCAAATGATT
AACCTCCCCTTGATGGGAACCAGTCTCAGAGCCAGTTGCTGCAGGGGAGT
GGCTGGCTGGACGAGAACTCTCGGGCCGTCATGGTGGAAGTCATCCTGTA
CAACCCAAACGCCAACCTTTTCTCCGTGGTGACGTTCTTAGTGGAGTTTA
CCTACTACGGGAACGCCTTCCCCTCGGCCGTGATCTCCACACTCCGCCTC
TTCCAGACCTCCCAAATCCTTCTACTGGCCCTGAAGGGAGTCATGGTGCT
GTTCCTCTTCATCTTCGTATACAAAGAAGTAACATTTGTTCAAACAGGGA
AGCTGCTCATGGCACTACCAGTCGAGTACCTGCAGGAGGTGTGGAACTGG
GTGGAGCTGCTCGTCATCCTGGCAGGATTCTCCACGCTGGGCGTGTACTT
CCAGACCCAGTCGGTGATCGACCAGGTCAGCGAGCCTGGCAGCCATGCCC
AGTTCTCGTTGTACCGGCGTGCGGCCGGCTGGGCGGAGGTGTACACCTAC
GTGAAGGCTGCACTGATCTGCTGTGTCACCCTGAAGCTGGTTCGTCTGCT
CAGGTTCAACAAGGTGGTGCAGGTTCTGTTCCTCACCATCAGAACATCCT
TCAAACCACTGGCTGCCTTCATGATGATGGCTGGTATTGTCATCATGGCA
TTTACACAGCTGGGCAGCCTGTTGTTTGGGGCTAACCTGAAGACGTACAG
CAGCATCGGCAGCAGTCTGGCCTCCATCTGCCTCATGACGATCGGCAGTT
TCGACACAGCAGAGCTGACAGAAGTGTCGTGGATTTATGGACCCATTTTC
TTCTTCCTTTTCCAGGTGACCATGCAGTTTTTCTTGATGACCATGTTTAT
GGCCATCCTGATGGACACCTATGCAGACGTGAATGAAAGCGCAGAGACAC
AGAAGTTGAGGATGATGGCCTACATGCGTGAAGAAATCATCACAAAAAAG
AGGAAGATGCAGCAGACTGTCAAGAACAAAAGGAAACCCCCAGACACCAG
CAGGTTGGAAATACGACACGTAAACCTGCGAGGAGATCTCAGTGTGTACA
GGAAAACCTTTGACCATGCCAACAATACACTGGAGTATGGGGCAAATGAT
TAACCTCCCCTTGATGGGAACCAGTCTCAGAGCCAGTTGCTGCAGGGGAG
TGGCTGGCTGGACGAGAACTCTCGGGCCGTCATGGTGGAAGTCATCCTGT
ACAACCCAAACGCCAACCTTTTCTCCGTGGTGACGTTCTTAGTGGAGTTT
ACCTACTACGGGAACGCCTTCCCCTCGGCCGTGATCTCCACACTCCGCCT
CTTCCAGACCTCCCAAATCCTTCTACTGGCCCTGAAGGGAGTCATGGTGC
TGTTCCTCTTCATCTTCGTATACAAAGAAGTAACATTTGTTCAAACAGGG
AAGCTGCTCATGGCACTACCAGTCGAGTACCTGCAGGAGGTGTGGAACTG
GGTGGAGCTGCTCGTCATCCTGGCAGGATTCTCCACGCTGGGCGTGTACT
TCCAGACCCAGTCGGTGATCGACCAGGTCAGCGAGCCTGGCAGCCATGCC
CAGTTCTCGTTGTACCGGCGTGCGGCCGGCTGGGCGGAGGTGTACACCTA
CGTGAAGGCTGCACTGATCTGCTGTGTCACCCTGAAGCTGGTTCGTCTGC
TCAGGTTCAACAAGGTGGTGCAGGTTCTGTTCCTCACCATCAGAACATCC
TTCAAACCACTGGCTGCCTTCATGATGATGGCTGGTATTGTCATCATGGC
ATTTACACAGCTGGGCAGCCTGTTGTTTGGGGCTAACCTGAAGACGTACA
GCAGCATCGGCAGCAGTCTGGCCTCCATCTGCCTCATGACGATCGGCAGT
TTCGACACAGCAGAGCTGACAGAAGTGTCGTGGATTTATGGACCCATTTT
CTTCTTCCTTTTCCAGGTGACCATGCAGTTTTTCTTGATGACCATGTTTA
TGGCCATCCTGATGGACACCTATGCAGACGTGAATGAAAGCGCAGAGACA
CAGAAGTTGAGGATGATGGCCTACATGCGTGAAGAAATCATCACAAAAAA
GAGGAAGATGCAGCAGACTGTCAAGAACAAAAGGAAACCCCCAGACACCA
GCAGGTTGGAAATACGACACGTAAACCTGCGAGGAGATCTCAGTGTGTAC
AGGAAAACCTTTGACCATGCCAACAATACACTGGAGTATGGGGCAAATGA
TTAACCTCCCCTTGATGGGAACCAGTCTCAGAGCCAGTTGCTGCAGGGGA
GTGGCTGGCTGGACGAGAACTCTCGGGCCGTCATGGTGGAAGTCATCCTG
TACAACCCAAACGCCAACCTTTTCTCCGTGGTGACGTTCTTAGTGGAGTT
TACCTACTACGGGAACGCCTTCCCCTCGGCCGTGATCTCCACACTCCGCC
TCTTCCAGACCTCCCAAATCCTTCTACTGGCCCTGAAGGGAGTCATGGTG
CTGTTCCTCTTCATCTTCGTATACAAAGAAGTAACATTTGTTCAAACAGG
GAAGCTGCTCATGGCACTACCAGTCGAGTACCTGCAGGAGGTGTGGAACT
GGGTGGAGCTGCTCGTCATCCTGGCAGGATTCTCCACGCTGGGCGTGTAC
TTCCAGACCCAGTCGGTGATCGACCAGGTCAGCGAGCCTGGCAGCCATGC
CCAGTTCTCGTTGTACCGGCGTGCGGCCGGCTGGGCGGAGGTGTACACCT
ACGTGAAGGCTGCACTGATCTGCTGTGTCACCCTGAAGCTGGTTCGTCTG
CTCAGGTTCAACAAGGTGGTGCAGGTTCTGTTCCTCACCATCAGAACATC
CTTCAAACCACTGGCTGCCTTCATGATGATGGCTGGTATTGTCATCATGG
CATTTACACAGCTGGGCAGCCTGTTGTTTGGGGCTAACCTGAAGACGTAC
AGCAGCATCGGCAGCAGTCTGGCCTCCATCTGCCTCATGACGATCGGCAG
TTTCGACACAGCAGAGCTGACAGAAGTGTCGTGGATTTATGGACCCATTT
TCTTCTTCCTTTTCCAGGTGACCATGCAGTTTTTCTTGATGACCATGTTT
ATGGCCATCCTGATGGACACCTATGCAGACGTGAATGAAAGCGCAGAGAC
ACAGAAGTTGAGGATGATGGCCTACATGCGTGAAGAAATCATCACAAAAA
AGAGGAAGATGCAGCAGACTGTCAAGAACAAAAGGAAACCCCCAGACACC
AGCAGGTTGGAAATACGACACGTAAACCTGCGAGGAGATCTCAGTGTGTA
CAGGAAAACCTTTGACCATGCCAACAATACACTGGAGTATGGGGCAAATG
ATTAACCTCCCCTTGATGGGAACCAGTCTCAGAGCCAGTTGCTGCAGGGG
AGTGGCTGGCTGGACGAGAACTCTCGGGCCGTCATGGTGGAAGTCATCCT
GTACAACCCAAACGCCAACCTTTTCTCCGTGGTGACGTTCTTAGTGGAGT
TTACCTACTACGGGAACGCCTTCCCCTCGGCCGTGATCTCCACACTCCGC
CTCTTCCAGACCTCCCAAATCCTTCTACTGGCCCTGAAGGGAGTCATGGT
GCTGTTCCTCTTCATCTTCGTATACAAAGAAGTAACATTTGTTCAAACAG
GGAAGCTGCTCATGGCACTACCAGTCGAGTACCTGCAGGAGGTGTGGAAC
TGGGTGGAGCTGCTCGTCATCCTGGCAGGATTCTCCACGCTGGGCGTGTA
CTTCCAGACCCAGTCGGTGATCGACCAGGTCAGCGAGCCTGGCAGCCATG
CCCAGTTCTCGTTGTACCGGCGTGCGGCCGGCTGGGCGGAGGTGTACACC
TACGTGAAGGCTGCACTGATCTGCTGTGTCACCCTGAAGCTGGTTCGTCT
GCTCAGGTTCAACAAGGTGGTGCAGGTTCTGTTCCTCACCATCAGAACAT
CCTTCAAACCACTGGCTGCCTTCATGATGATGGCTGGTATTGTCATCATG
GCATTTACACAGCTGGGCAGCCTGTTGTTTGGGGCTAACCTGAAGACGTA
CAGCAGCATCGGCAGCAGTCTGGCCTCCATCTGCCTCATGACGATCGGCA
GTTTCGACACAGCAGAGCTGACAGAAGTGTCGTGGATTTATGGACCCATT
TTCTTCTTCCTTTTCCAGGTGACCATGCAGTTTTTCTTGATGACCATGTT
TATGGCCATCCTGATGGACACCTATGCAGACGTGAATGAAAGCGCAGAGA
CACAGAAGTTGAGGATGATGGCCTACATGCGTGAAGAAATCATCACAAAA
AAGAGGAAGATGCAGCAGACTGTCAAGAACAAAAGGAAACCCCCAGACAC
CAGCAGGTTGGAAATACGACACGTAAACCTGCGAGGAGATCTCAGTGTGT
ACAGGAAAACCTTTGACCATGCCAACAATACACTGGAGTATGGGGCAAAT
GATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000035 | genome | Sc0000035:689744..693066 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96371_cuf23 |
| Biotype | protein_coding |
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