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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96344_cuf6 >transcript:BL96344_cuf6-protein ID=transcript:BL96344_cuf6-protein|Name=transcript:BL96344_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=247bp
DIECRVDSGLEMDYTRTGQDVTCDIHQGLVCENSKQRGFLPFCYDYKIRV
FCECGGETTTEGYPEPQTTGSTELSSERPATTKAPVYEGTTTVASPTEVS
TTASMPTTTRRRRVCESKCSCTLGCDDNTGDCEPLPECDLFCVCTDLTDD
RANGRCARQPADGTCTEETTPVFVGTTSLPYAGKTTKSVIPHTTGYLRTT
GRPEYSTGSPEYTGHPEYSTGSPEYTGHPEYSTGRPEYTGHPEYSTG Run BLAST on NCBI mRNA from alignment at Sc0000411:113489..115381+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96344_cuf6 ID=transcript:BL96344_cuf6|Name=transcript:BL96344_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=1893bp|location=Sequence derived from alignment at Sc0000411:113489..115381+ (Branchiostoma lanceolatum)
AGACATTGAGTGCCGTGTGGACAGCGGTTTGGAAATGGACTACACCAGGA
CTGGCCAGGATGTGACCTGTGACATCCACCAGGGTCTAGTTTGTGAGAAC
TCCAAGCAGCGTGGATTCCTGCCTTTCTGCTATGACTACAAGATCAGGGT
GTTCTGTGAGTGTGGTGGGGAGACAACCACTGAAGGATATCCAGAACCCC
AGACAACAGGTTCTACTGAGCTGTCTTCTGAGAGACCAGCAACAACAAAA
GCACCAGTGTATGAGGGAACCACAACTGTGGCATCTCCTACAGAAGTGTC
TACAACTGCCTCCATGCCTACAACTACAAGGAGAAGGAGAGGTAGGGATA
CATGTATTATGCATATCAATATCACATTTCTTCTGAAATAAATCATTGGC
TCATAATTTGTAACAACATGGATCGTATAGGTCTGTTTGTGCTAATGATT
TCTGGATAAAAAAGCAACATGCAGCACAGACATGATGAAATATTCCTTAA
CACAGCTCAAGCATATACTGGAATGCACTCTGTGAAATAAAAACTATGGT
ACACAATTTGATTTGTGACTTCCACCATAAATTTGTCTCTTGTTCATATT
TAAAGTCTAGAATCCCTTACCTAGACTTATTTTATACAAGGCTATCGTAC
AACCTCAAATTTTCGTGTTACTAGAAAAAAAATAGTATCTACATAGAAAA
TCAACAAATGATGGAATTCCTAATGTTAAACGAAGCATGTTAAAACTTGA
ATAGCTTCCAAAAAATAAACATATATGTTGCACAAGGATAGCCAGACTAG
CTTTGGTCCACTTCTGATGGTTGCTACTTGTTGGCTGAGTAGCAACTGTT
GGGAGCAGACCAAAGCTAACAAGGCTGGACTCCAGGCTAGCACAAGCCAT
CAGCAGCATCACAATGGTTGTCTTTCTCTATTTTACAGTGTGTGAGTCAA
AGTGCAGCTGTACTTTGGGCTGTGATGACAACACCGGAGACTGTGAGCCT
CTGCCTGAGTGTGACCTTTTCTGTGTCTGCACTGACCTCACTGATGACAG
GGCCAACGGACGTTGTGCTAGGCAACCAGCTGATGGCACCTGCACTGAAG
GTCCGTATGATTTGTGCTCCATGTTATTAAGTGATGTTAATACTTGTTCT
GCTTTAATGTTCTGATGCTCGTTTATATCCAGTGAACGACACAGTAAAGA
AAATGAGCTGAACTGTGAATTTTTATTCCTGTGCCATGTGAGCTCAGATG
GCAGATCTAGAGTGATACAAGTTTCACAGAACTGATACAAGTTACACAGG
TTACAAACTGCGCCTGATGATAAAGGATTACTACTTAGGTAGCAGTTAAA
TATGCCTGATAAGAAAAATTGTGCGGATGCTATTCTTGTCTATTTTAGAT
ATGTAACAGGTAGTGCTACATTTTTTGCCATTAAAAGGCAATTAGATTTG
GATGAAATGGACATTTGCAAGCTGTAGCAGACTCTCAACGTTTTATTATC
AAAAGGGAAATTTCAAAATGAAATTTCTCTGTGACACTGAAACTCTCAAT
GCATTGTAACAGTGTGGACTAGAACTGAATAATAAACAGGTAATCGTAAC
TTTCTATAATCCTACAGCAATTATAATGTTAACTCTTTGACACCCTATTT
GCAGAAACTACACCAGTCTTTGTTGGAACAACTTCCTTGCCATATGCTGG
GAAGACAACAAAGTCAGTCATTCCTCATACAACTGGCTACCTCAGAACTA
CAGGACGCCCAGAGTACAGCACTGGCAGCCCTGAATACACAGGACACCCA
GAGTACAGCACTGGCAGCCCTGAATACACAGGACACCCAGAGTACAGCAC
TGGCAGGCCTGAATACACAGGACACCCAGAGTACAGCACTGGC Coding sequence (CDS) from alignment at Sc0000411:113489..115381+ >transcript:BL96344_cuf6 ID=transcript:BL96344_cuf6|Name=transcript:BL96344_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=2223bp|location=Sequence derived from alignment at Sc0000411:113489..115381+ (Branchiostoma lanceolatum)
GACATTGAGTGCCGTGTGGACAGCGGTTTGGAAATGGACTACACCAGGAC
TGGCCAGGATGTGACCTGTGACATCCACCAGGGTCTAGTTTGTGAGAACT
CCAAGCAGCGTGGATTCCTGCCTTTCTGCTATGACTACAAGATCAGGGTG
TTCTGTGAGTGTGGTGGGGAGACAACCACTGAAGGATATCCAGAACCCCA
GACAACAGGTTCTACTGAGCTGTCTTCTGAGAGACCAGCAACAACAAAAG
CACCAGTGTATGAGGGAACCACAACTGTGGCATCTCCTACAGAAGTGTCT
ACAACTGCCTCCATGCCTACAACTACAAGGAGAAGGAGAGTGTGTGAGTC
AAAGTGCAGCTGTACTTTGGGCTGTGATGACAACACCGGAGACTGTGAGC
CTCTGCCTGAGTGTGACCTTTTCTGTGTCTGCACTGACCTCACTGATGAC
AGGGCCAACGGACGTTGTGCTAGGCAACCAGCTGATGGCACCTGCACTGA
AGAAACTACACCAGTCTTTGTTGGAACAACTTCCTTGCCATATGCTGGGA
AGACAACAAAGTCAGTCATTCCTCATACAACTGGCTACCTCAGAACTACA
GGACGCCCAGAGTACAGCACTGGCAGCCCTGAATACACAGGACACCCAGA
GTACAGCACTGGCAGCCCTGAATACACAGGACACCCAGAGTACAGCACTG
GCAGGCCTGAATACACAGGACACCCAGAGTACAGCACTGGCGACATTGAG
TGCCGTGTGGACAGCGGTTTGGAAATGGACTACACCAGGACTGGCCAGGA
TGTGACCTGTGACATCCACCAGGGTCTAGTTTGTGAGAACTCCAAGCAGC
GTGGATTCCTGCCTTTCTGCTATGACTACAAGATCAGGGTGTTCTGTGAG
TGTGGTGGGGAGACAACCACTGAAGGATATCCAGAACCCCAGACAACAGG
TTCTACTGAGCTGTCTTCTGAGAGACCAGCAACAACAAAAGCACCAGTGT
ATGAGGGAACCACAACTGTGGCATCTCCTACAGAAGTGTCTACAACTGCC
TCCATGCCTACAACTACAAGGAGAAGGAGAGTGTGTGAGTCAAAGTGCAG
CTGTACTTTGGGCTGTGATGACAACACCGGAGACTGTGAGCCTCTGCCTG
AGTGTGACCTTTTCTGTGTCTGCACTGACCTCACTGATGACAGGGCCAAC
GGACGTTGTGCTAGGCAACCAGCTGATGGCACCTGCACTGAAGAAACTAC
ACCAGTCTTTGTTGGAACAACTTCCTTGCCATATGCTGGGAAGACAACAA
AGTCAGTCATTCCTCATACAACTGGCTACCTCAGAACTACAGGACGCCCA
GAGTACAGCACTGGCAGCCCTGAATACACAGGACACCCAGAGTACAGCAC
TGGCAGCCCTGAATACACAGGACACCCAGAGTACAGCACTGGCAGGCCTG
AATACACAGGACACCCAGAGTACAGCACTGGCGACATTGAGTGCCGTGTG
GACAGCGGTTTGGAAATGGACTACACCAGGACTGGCCAGGATGTGACCTG
TGACATCCACCAGGGTCTAGTTTGTGAGAACTCCAAGCAGCGTGGATTCC
TGCCTTTCTGCTATGACTACAAGATCAGGGTGTTCTGTGAGTGTGGTGGG
GAGACAACCACTGAAGGATATCCAGAACCCCAGACAACAGGTTCTACTGA
GCTGTCTTCTGAGAGACCAGCAACAACAAAAGCACCAGTGTATGAGGGAA
CCACAACTGTGGCATCTCCTACAGAAGTGTCTACAACTGCCTCCATGCCT
ACAACTACAAGGAGAAGGAGAGTGTGTGAGTCAAAGTGCAGCTGTACTTT
GGGCTGTGATGACAACACCGGAGACTGTGAGCCTCTGCCTGAGTGTGACC
TTTTCTGTGTCTGCACTGACCTCACTGATGACAGGGCCAACGGACGTTGT
GCTAGGCAACCAGCTGATGGCACCTGCACTGAAGAAACTACACCAGTCTT
TGTTGGAACAACTTCCTTGCCATATGCTGGGAAGACAACAAAGTCAGTCA
TTCCTCATACAACTGGCTACCTCAGAACTACAGGACGCCCAGAGTACAGC
ACTGGCAGCCCTGAATACACAGGACACCCAGAGTACAGCACTGGCAGCCC
TGAATACACAGGACACCCAGAGTACAGCACTGGCAGGCCTGAATACACAG
GACACCCAGAGTACAGCACTGGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000411 | genome | Sc0000411:113489..115381 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96344_cuf6 |
| Biotype | protein_coding |
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