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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96343_cuf3 >transcript:BL96343_cuf3-protein ID=transcript:BL96343_cuf3-protein|Name=transcript:BL96343_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=193bp
TAPTATGTTKSPVTTGPTGSTTPSSGVTTPVVCSAPLVAMQCSCKKTCSM
VYEECNEENCEMGCYCPEGTYRVGSRCIPETECPCVYQGKTYASGGRWLA
NECTLCICQERLAFCTKKCDRTCAEDEELINPSGSQCCYCQSLPSETTVT
ATTPIATTPTSSEAVTTVTPATEFPISTPEPCSGCYVQGDCLE Run BLAST on NCBI mRNA from alignment at Sc0000411:102384..104307+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96343_cuf3 ID=transcript:BL96343_cuf3|Name=transcript:BL96343_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=1924bp|location=Sequence derived from alignment at Sc0000411:102384..104307+ (Branchiostoma lanceolatum)
CCACTGCACCCACTGCTACAGGGACTACCAAATCTCCTGTTACCACTGGG
CCTACGGGGTCAACGACCCCAAGCTCTGGAGTCACCACTCCTGTTGGTAA
GGACAATTTGAACTTGTTGGCAACGCCTCAGGGGGCGGAGCTGTTATTGA
ATTTGGTAATACTATATAATGCACCCCAGATGTTGATGATTTTACGTTTG
ACGGCAAGTGAATGCTAAAAATGGAGCATCAGTCATTGGAATCATTAGTA
GGCATTCGTCAGTCTCGTAAGACTACGAATAGTACAGATTCTACACAGTG
TTGACTGATTGTTTGTTTTTTACGTTTTTAATTGAAATCATAAACTGCAG
CATAATGTTGAGTGTTTAATGCATGATTGATTTTTGCTTGTCTGTTTGTA
GCCAAAGAAATTCATGTCTTGATTTAGGAAATTTCCATCTCGCTTGTAGC
TTCTGAAGTTCCAAGTTAATCATAACTACAGATTTCAAACATATCAACTA
ATCTGATAAACAAAACTACTGCCTTAAAATTTTCCTGGATGCAGACTGTT
TCCTAATCGTATTTGTTTAATCATATCTTACAGTCTGTTCAGCCCCCCTG
GTGGCCATGCAGTGCAGCTGTAAAAAGACCTGCAGTATGGTGTATGAGGA
GTGTAACGAGGAGAACTGTGAGATGGGCTGCTACTGTCCTGAGGGGACCT
ACAGGGTTGGGTCCAGGTGCATCCCTGAGACAGAGTGCCCATGTGTCTAC
CAGGGCAAGACATATGCTGTAAGACAAAAGGATCATACAACATCTGATGT
GTCTTAAAATTTTGTGAGATTTGCTTGTTGAACATTCTACATATGAGATA
CAGGGCAACACATATATATAAGACATTAAGATTTATATAATATCTGATGT
GTCTAACAAAATTGTAAGGAATGCTTGTTAAATAGCATTCCACATATGAG
ATACCTTTGGAAAAATGTAATTGTCCAACATATAGCTAAAAGAAAATGAC
CAAGTCTTGCTGAACTGAAAGTGACAATTGTTTTGAGATGGTAAAACTAT
TATAACTTAAGTTAACAGCATATGTGAGGTGTTGTAAATTTCTATCATGA
GTATAACATTATTTTTGCTTTGCTAGTCTGGTGGGAGGTGGCTGGCCAAT
GAGTGCACGTTGTGTATCTGCCAAGAGCGTCTAGCCTTCTGCACCAAGAA
GTGTGACAGGACATGTGCAGAGGTCAGTTCTTTATAACTATTATATTCAT
ACAGTAACTGCTATTGCAAGAGACTTGTTAATGTAACATTAATCTCTTCA
TTGTGATGTCAATGGCTGAGCAGTCAGTCTAGCAGACATGGGATCAAGAT
TAATTCTAAAGGCACTTAACACAACTTTCCTCACTCCATCCAGCTAGCTG
TAAATGGGTCCCTGACTTTAGACGGTTTAGTTGAGGAGGTAAAAGCTAAA
GCCGTTGAAAGAAGACCAATTCCGTGCCCAAAGTGGATTTAACAAATACT
CCTGTATACGGCCTCAGAAATGCTGTGGGATGTTTGCCTAAATTCTAAGC
TTGATATATTACGTCGCTTTATTGTCTTTTTACAGGATGAAGAGCTGATC
AACCCCTCAGGGAGCCAATGCTGCTATTGCCAATCTCGTAAGCAAATCTT
TCGAATTTGCCTATTAAGTACAATTTTGAATATGTACAATACACAATGTC
ATGTATTATCAATCTAGTCTTGATATTGCATCAAAGTTGATCTTGCACCA
AAACTTTGTATTTTCCATTAGTGCCATCAGAAACCACTGTCACTGCCACA
ACCCCTATCGCCACTACTCCCACCTCATCAGAGGCCGTCACCACGGTTAC
GCCCGCCACAGAGTTCCCCATCTCTACACCAGAGCCGTGCAGTGGCTGTT
ATGTACAAGGAGACTGTTTGGAGG Coding sequence (CDS) from alignment at Sc0000411:102384..104307+ >transcript:BL96343_cuf3 ID=transcript:BL96343_cuf3|Name=transcript:BL96343_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2895bp|location=Sequence derived from alignment at Sc0000411:102384..104307+ (Branchiostoma lanceolatum)
ACTGCACCCACTGCTACAGGGACTACCAAATCTCCTGTTACCACTGGGCC
TACGGGGTCAACGACCCCAAGCTCTGGAGTCACCACTCCTGTTGTCTGTT
CAGCCCCCCTGGTGGCCATGCAGTGCAGCTGTAAAAAGACCTGCAGTATG
GTGTATGAGGAGTGTAACGAGGAGAACTGTGAGATGGGCTGCTACTGTCC
TGAGGGGACCTACAGGGTTGGGTCCAGGTGCATCCCTGAGACAGAGTGCC
CATGTGTCTACCAGGGCAAGACATATGCTTCTGGTGGGAGGTGGCTGGCC
AATGAGTGCACGTTGTGTATCTGCCAAGAGCGTCTAGCCTTCTGCACCAA
GAAGTGTGACAGGACATGTGCAGAGGATGAAGAGCTGATCAACCCCTCAG
GGAGCCAATGCTGCTATTGCCAATCTCTGCCATCAGAAACCACTGTCACT
GCCACAACCCCTATCGCCACTACTCCCACCTCATCAGAGGCCGTCACCAC
GGTTACGCCCGCCACAGAGTTCCCCATCTCTACACCAGAGCCGTGCAGTG
GCTGTTATGTACAAGGAGACTGTTTGGAGACTGCACCCACTGCTACAGGG
ACTACCAAATCTCCTGTTACCACTGGGCCTACGGGGTCAACGACCCCAAG
CTCTGGAGTCACCACTCCTGTTGTCTGTTCAGCCCCCCTGGTGGCCATGC
AGTGCAGCTGTAAAAAGACCTGCAGTATGGTGTATGAGGAGTGTAACGAG
GAGAACTGTGAGATGGGCTGCTACTGTCCTGAGGGGACCTACAGGGTTGG
GTCCAGGTGCATCCCTGAGACAGAGTGCCCATGTGTCTACCAGGGCAAGA
CATATGCTTCTGGTGGGAGGTGGCTGGCCAATGAGTGCACGTTGTGTATC
TGCCAAGAGCGTCTAGCCTTCTGCACCAAGAAGTGTGACAGGACATGTGC
AGAGGATGAAGAGCTGATCAACCCCTCAGGGAGCCAATGCTGCTATTGCC
AATCTCTGCCATCAGAAACCACTGTCACTGCCACAACCCCTATCGCCACT
ACTCCCACCTCATCAGAGGCCGTCACCACGGTTACGCCCGCCACAGAGTT
CCCCATCTCTACACCAGAGCCGTGCAGTGGCTGTTATGTACAAGGAGACT
GTTTGGAGACTGCACCCACTGCTACAGGGACTACCAAATCTCCTGTTACC
ACTGGGCCTACGGGGTCAACGACCCCAAGCTCTGGAGTCACCACTCCTGT
TGTCTGTTCAGCCCCCCTGGTGGCCATGCAGTGCAGCTGTAAAAAGACCT
GCAGTATGGTGTATGAGGAGTGTAACGAGGAGAACTGTGAGATGGGCTGC
TACTGTCCTGAGGGGACCTACAGGGTTGGGTCCAGGTGCATCCCTGAGAC
AGAGTGCCCATGTGTCTACCAGGGCAAGACATATGCTTCTGGTGGGAGGT
GGCTGGCCAATGAGTGCACGTTGTGTATCTGCCAAGAGCGTCTAGCCTTC
TGCACCAAGAAGTGTGACAGGACATGTGCAGAGGATGAAGAGCTGATCAA
CCCCTCAGGGAGCCAATGCTGCTATTGCCAATCTCTGCCATCAGAAACCA
CTGTCACTGCCACAACCCCTATCGCCACTACTCCCACCTCATCAGAGGCC
GTCACCACGGTTACGCCCGCCACAGAGTTCCCCATCTCTACACCAGAGCC
GTGCAGTGGCTGTTATGTACAAGGAGACTGTTTGGAGACTGCACCCACTG
CTACAGGGACTACCAAATCTCCTGTTACCACTGGGCCTACGGGGTCAACG
ACCCCAAGCTCTGGAGTCACCACTCCTGTTGTCTGTTCAGCCCCCCTGGT
GGCCATGCAGTGCAGCTGTAAAAAGACCTGCAGTATGGTGTATGAGGAGT
GTAACGAGGAGAACTGTGAGATGGGCTGCTACTGTCCTGAGGGGACCTAC
AGGGTTGGGTCCAGGTGCATCCCTGAGACAGAGTGCCCATGTGTCTACCA
GGGCAAGACATATGCTTCTGGTGGGAGGTGGCTGGCCAATGAGTGCACGT
TGTGTATCTGCCAAGAGCGTCTAGCCTTCTGCACCAAGAAGTGTGACAGG
ACATGTGCAGAGGATGAAGAGCTGATCAACCCCTCAGGGAGCCAATGCTG
CTATTGCCAATCTCTGCCATCAGAAACCACTGTCACTGCCACAACCCCTA
TCGCCACTACTCCCACCTCATCAGAGGCCGTCACCACGGTTACGCCCGCC
ACAGAGTTCCCCATCTCTACACCAGAGCCGTGCAGTGGCTGTTATGTACA
AGGAGACTGTTTGGAGACTGCACCCACTGCTACAGGGACTACCAAATCTC
CTGTTACCACTGGGCCTACGGGGTCAACGACCCCAAGCTCTGGAGTCACC
ACTCCTGTTGTCTGTTCAGCCCCCCTGGTGGCCATGCAGTGCAGCTGTAA
AAAGACCTGCAGTATGGTGTATGAGGAGTGTAACGAGGAGAACTGTGAGA
TGGGCTGCTACTGTCCTGAGGGGACCTACAGGGTTGGGTCCAGGTGCATC
CCTGAGACAGAGTGCCCATGTGTCTACCAGGGCAAGACATATGCTTCTGG
TGGGAGGTGGCTGGCCAATGAGTGCACGTTGTGTATCTGCCAAGAGCGTC
TAGCCTTCTGCACCAAGAAGTGTGACAGGACATGTGCAGAGGATGAAGAG
CTGATCAACCCCTCAGGGAGCCAATGCTGCTATTGCCAATCTCTGCCATC
AGAAACCACTGTCACTGCCACAACCCCTATCGCCACTACTCCCACCTCAT
CAGAGGCCGTCACCACGGTTACGCCCGCCACAGAGTTCCCCATCTCTACA
CCAGAGCCGTGCAGTGGCTGTTATGTACAAGGAGACTGTTTGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000411 | genome | Sc0000411:102384..104307 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96343_cuf3 |
| Biotype | protein_coding |
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