|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96342_cuf2 >transcript:BL96342_cuf2-protein ID=transcript:BL96342_cuf2-protein|Name=transcript:BL96342_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=115bp
ECKCEDNYERTCYKTGCNIDSSYCQEGEMFYDDTDNGGCCGCRQFTTTTT
TTASSTYVTTRLPPYTTPAICEDGSEWVADDCHSCRCVNGQSECYKACNK
DSCAEGYRLVQEEDK Run BLAST on NCBI mRNA from alignment at Sc0000411:100012..102037+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96342_cuf2 ID=transcript:BL96342_cuf2|Name=transcript:BL96342_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2026bp|location=Sequence derived from alignment at Sc0000411:100012..102037+ (Branchiostoma lanceolatum)
GAGTGTAAGTGTGAGGACAACTATGAGAGGACCTGCTACAAGACAGGCTG
TAACATTGACTCCAGCTACTGTCAGGAGGGGGAGATGTTCTATGATGACA
CAGACAATGGAGGGTGTTGTGGATGCAGACAGTTCACAAGTGAGTACGCT
TGGAGGTGTTCTGTTTCTGTAAGATCTATGTCTTTAGCACCAGTGCAATG
GCCTTGTCGGTAGAGTGTTTGCCTTGCACATGTTAGGTCCCGAGTTCGAT
CCCCGGCCGGATCTAACAAAAAAAAAAGGTACATACTGCTTTCTCTGCTT
AGCACTCAGCGTTTGGGAAAGAGTATGGCAGTTGAACACACCAAAGTGCA
CTAGCCCCCTGCTGTATGGATTATACAAAGCTGTGCGCCCCAAGGGCTAT
TGAAACCATCTGGTGCGGCAAGGAACTTTTTTAAACTGTGTCTTTAGCAG
CTATTTTCAAGTCAAGCAGAGATATATCATAACGATTATGAATTAGTCAT
TTTTAAGTGTACCAAATTGGTAGTAAAGTTACCTAGATCGTCAACTTTTT
AAAGGTTTGCCCCATAACGTGCCATTTCTATGAATTTGTTAGTAAATTTC
TTGTATCTTTTGTCTGACAAAATGTTTCTGTTGCAGCCACCACCACAACC
ACAGCCTCCAGTACATATGTGACTACAAGGCTGCCGCCTTACACAACCCC
AGCTATATGTGAGGTAAGCATTATCTTCAAGATATCCAAAAAAACTAGTC
TTCCATTGGGTAAAATATTACAAGCCAAAGCAGATGCTCATTTATTTGAT
GTTTTGTACTTTCCTAATTGGGAATATAAGTTTGAATATATACGCCGCCA
GATAGCAGTTAACGGGGGGTGCCCAACCATCGGACGTTTTTTTACGAGCT
GGAACTCACGGCGCTCCATCGCTGGTTGCCAGAGAGTGGTCAGGTTTTAA
TGAATGAATTTTGAACACATTCATCTAAAGACCATACTTGGACAAGAAAT
GTATTCATACTGTTCATGGGCCCTTCATGCTCCGCGTTACATGCGGAAGA
CGCTGTGAGACATTTTCACGAATGTACCTTCTGATTTAGTGCTACGCCAG
ATAGTGTGCCTAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTACTGTAAAATT
TAATGATGATTGTGTAATAAAGATCTGCATTGAACACTATGTACTTCCTA
CAGGATGGTAGTGAGTGGGTGGCTGATGACTGCCACTCCTGTCGATGTGT
GAACGGCCAGTCTGAATGCTACAAGGCCTGCAACAAGGACAGCTGTGCTG
AGGTAACTAATAAGTAACTCTTTTACTACCTTTTGCATTGTACTGTTTTA
AGTCTGTCACTTATTGCAATAATTGTTGTTTTAAAATTAGTTTAGGGCCA
TACCAAGTTATTTTCCTGGTGCTTGGAATCTTGACCTTAAAATATTGACC
TTGAAATGTTAATGAAGATGACAATTTTGCATATCTTTCTTCACAGGGAT
ACAGACTAGTTCAGGAGGAAGATAAG Coding sequence (CDS) from alignment at Sc0000411:100012..102037+ >transcript:BL96342_cuf2 ID=transcript:BL96342_cuf2|Name=transcript:BL96342_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1380bp|location=Sequence derived from alignment at Sc0000411:100012..102037+ (Branchiostoma lanceolatum)
GAGTGTAAGTGTGAGGACAACTATGAGAGGACCTGCTACAAGACAGGCTG
TAACATTGACTCCAGCTACTGTCAGGAGGGGGAGATGTTCTATGATGACA
CAGACAATGGAGGGTGTTGTGGATGCAGACAGTTCACAACCACCACCACA
ACCACAGCCTCCAGTACATATGTGACTACAAGGCTGCCGCCTTACACAAC
CCCAGCTATATGTGAGGATGGTAGTGAGTGGGTGGCTGATGACTGCCACT
CCTGTCGATGTGTGAACGGCCAGTCTGAATGCTACAAGGCCTGCAACAAG
GACAGCTGTGCTGAGGGATACAGACTAGTTCAGGAGGAAGATAAGGAGTG
TAAGTGTGAGGACAACTATGAGAGGACCTGCTACAAGACAGGCTGTAACA
TTGACTCCAGCTACTGTCAGGAGGGGGAGATGTTCTATGATGACACAGAC
AATGGAGGGTGTTGTGGATGCAGACAGTTCACAACCACCACCACAACCAC
AGCCTCCAGTACATATGTGACTACAAGGCTGCCGCCTTACACAACCCCAG
CTATATGTGAGGATGGTAGTGAGTGGGTGGCTGATGACTGCCACTCCTGT
CGATGTGTGAACGGCCAGTCTGAATGCTACAAGGCCTGCAACAAGGACAG
CTGTGCTGAGGGATACAGACTAGTTCAGGAGGAAGATAAGGAGTGTAAGT
GTGAGGACAACTATGAGAGGACCTGCTACAAGACAGGCTGTAACATTGAC
TCCAGCTACTGTCAGGAGGGGGAGATGTTCTATGATGACACAGACAATGG
AGGGTGTTGTGGATGCAGACAGTTCACAACCACCACCACAACCACAGCCT
CCAGTACATATGTGACTACAAGGCTGCCGCCTTACACAACCCCAGCTATA
TGTGAGGATGGTAGTGAGTGGGTGGCTGATGACTGCCACTCCTGTCGATG
TGTGAACGGCCAGTCTGAATGCTACAAGGCCTGCAACAAGGACAGCTGTG
CTGAGGGATACAGACTAGTTCAGGAGGAAGATAAGGAGTGTAAGTGTGAG
GACAACTATGAGAGGACCTGCTACAAGACAGGCTGTAACATTGACTCCAG
CTACTGTCAGGAGGGGGAGATGTTCTATGATGACACAGACAATGGAGGGT
GTTGTGGATGCAGACAGTTCACAACCACCACCACAACCACAGCCTCCAGT
ACATATGTGACTACAAGGCTGCCGCCTTACACAACCCCAGCTATATGTGA
GGATGGTAGTGAGTGGGTGGCTGATGACTGCCACTCCTGTCGATGTGTGA
ACGGCCAGTCTGAATGCTACAAGGCCTGCAACAAGGACAGCTGTGCTGAG
GGATACAGACTAGTTCAGGAGGAAGATAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000411 | genome | Sc0000411:100012..102037 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96342_cuf2 |
| Biotype | protein_coding |
|
