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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96341_cuf1 >transcript:BL96341_cuf1-protein ID=transcript:BL96341_cuf1-protein|Name=transcript:BL96341_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=241bp
EYLEVQFEEPIEITSITTQGGGDEGYVTKYKVAYSVDGEEWTFVTEPATE
EGQEPVDKLFDGNTDGTTPVTTELSEPVEAKLVRIFPEDWEENIALKVEL
NTEETETPEPTFTASSSEADHLPEDAHLKPEDKTTTPVTPEGKTTPGTPE
DKTTPGTEITPEYWSPVEDKPEEYLEVQFKEPVQITSIVTQGGGDEGYVT
KYKVAYSVDGEEWTFVTEPGTEEGQEPEEQVFDGNTDGTSV Run BLAST on NCBI mRNA from alignment at Sc0000411:94362..97267+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96341_cuf1 ID=transcript:BL96341_cuf1|Name=transcript:BL96341_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2906bp|location=Sequence derived from alignment at Sc0000411:94362..97267+ (Branchiostoma lanceolatum)
GAGAGTACCTGGAGGTCCAGTTTGAAGAGCCTATTGAGGTCAGCAAGAAA
TACAATATTGGATGCATGAAAATGCAATCTAGTTCCTTAGACAAGTATTT
AGCAACAAAAAAAAACAATCAAGGGAAGGGTCCTTCTCAGGAGTGATGAC
ACCATGACATGATACATCTTCATTAGTTAGAAAACCTTTCTACCAGACCT
GACAGTTAATAGTTTAAATCCCAAACTTGCATCTTGTATATTGATATATT
AGTGCTAGAATTTAGAAAGGGCTGCAATTCTTTATTCAGAACAATTGAAA
CTTTAGTAGACTTTTACCATACTCACTTAAACACAGTACACACATTTATC
CAGAACATTGATAATTTGTCTACACTTGACTTCACTTCACTGTATGTACA
TGTACTGCAAAGAACACGCAAATTTCGAGCTATTAACTGTTGAATTATAT
CAAATTTCTGCATACGTAGACTAACATTGGATTTAGACTTTTAGTTTTAT
AATAGTTCAATGGTCTACAACAAAGTCAATTGTAAAGAACACTCTACAAG
TAACAGAAAGTTTGAAATAAGTCTGTTGTTCTTTTCCTTCCAGATCACCT
CCATCACTACCCAGGGAGGTGGAGACGAGGGTTATGTGACTAAGTACAAG
GTGGCCTACTCTGTAGATGGGGAGGAGTGGACATTTGTCACTGAGCCTGC
AACTGAGGAGGGACAGGAACCAGTGGATAAGGTGTGTTAACAACATTCCT
AGGTTATGCTGTTCATTGATTTGGTTTGTTTTATTGCAGTGTTCCTATGT
CAAAACATTGATGATGATGATGATGATGATGATGATGATGATGGTTTGTT
TTATTGCAGTGTTCCTATGTCAAAACATTGATGATGATGATGATGATGAT
GATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGA
TGATGATGATGATGAATATCACATGCAACAGATTATCTAAATTTTATATC
ATAAACCATGGTTGAGAAAGGCAACAGTTTGGTTAAAGGAAAAGTTAGTC
CCATATGTTGATGAAGGTTAGACCCATAGTTTTAAGATCACACATGTTTT
AAGATCACAATTGTTTGACTCCTTTAACCTTTATGTGCACTCAAGGCAAT
AGTCTGCAATTTTCACAATAGTGTGATGATGAAACCACTTAAAAGTACTC
GTGTTCTTAGTGTATTTTTATAACAACTATAATACTAAAATTCTTTTTCT
TGTACAATCCTATGACATTGGATAGTTAAGGATAGTTGCAAAATTTGGAT
TTGTTATTAATTTTGTGATCTCTTTCCAGCTGTTTGATGGCAACACTGAT
GGCACTACCCCAGTAACAACGGAGTTGTCTGAACCAGTGGAGGCCAAACT
GGTGCGAATCTTCCCTGAAGACTGGGAAGAAAACATCGCTCTTAAGGTAG
AGCTGAACACAGAGGAGACTGAAACTCCAGAACCAACTTTCACAGCTTCT
TCATCTGAGGCTGACCATCTACCAGAAGATGCACATCTTAAGCCTGAGGA
CAAAACAACAACACCTGTCACACCTGAAGGAAAGACAACACCTGGTACAC
CTGAAGACAAGACTACACCTGGTACAGAGATCACACCTGAGTACTGGTCA
CCTGTAGAGGATAAACCAGAGGAGTACCTGGAAGTACAGTTCAAAGAACC
AGTACAGGTGAAACAAAAGTGTTTACTCTGTAAACTCTCTTAATATGCTG
ATGTCANGATAAACCAGAGGAGTACCTGGAAGTACAGTTCAAAGAACCAG
TACAGGTGAAACAAAAGTGTTTACTCATGTCATTGAGTGTCATTGTTTTG
AAATATTCTTATAAAATACATATTGATTGGCTGAAAAATCATATTTTGTG
AAATAATTGTTAATATGTATCATTCAAACAGAAGACTGAACGATATTGCA
ATTCCACTACTTTAAGTAAAAATCGAATTTAGAAGTTAGAAAATCATTCG
CAAAGTAACAGTTACTCACTGACAGGCAAGTGAATAAAATGTGGAATAAT
TTGTTCATAATTTTACTCTTTTGCCTTCTATATTTGCAGGTTTTTAATGG
GTGATTTTCAAATTTGGTTAGTCTTGCACTAAACATATTCTTTGTCATTT
GTCTTTTCTTAGATCACATCCATAGTAACCCAGGGAGGAGGAGACGAGGG
TTATGTGACTAAGTACAAGGTGGCCTACTCTGTAGATGGGGAGGAGTGGA
CATTTGTCACTGAACCTGGAACTGAGGAGGGACAGGAACCAGAAGAACAG
GTAAAGAATTGTTTTTATTTCTTATTGCAATTCGATTATTTTGTTCCATG
TTGTGTGTTTTTTAAAATGTTATTCTATTGCAACTTTTGTGTTTTATACA
GTTATAATAATTTCAATCCACAGTTTTGTGTAATTAACAGAAGATTGGGG
CTTTGAAATGTACTTGTCAATATCTTAATGCTACCTGCTCAAGGAGAAAA
CTGTAACAGTTATCTTCATTGCATAGGGAATCAAAATTACATTTCCTTAC
AAGATGTCCACACACAGGAAGATTCATTTCCTTTATTTTCTACTAATCAT
TAGAACTATTCTTTTTTCTTTAACACAACACAAAAACTGAAGGACACAAG
TTGCTATTGCACTGTATCAACTGTTACAAGATGCAACTGCACCAAATCTG
TTTGATTTTGGATTTAGCAATTAAAGAGGTCAAGTTTAAACTCTAAGGCA
TCTTTACTCACAGCAAATGCACAGGGCCTGCATTTTTATACATTGCATTT
AGAAGAACACTTTCCCTCTAAAAGTAGCAAAGAGATTAAGAAACACTCAT
TTTTACACACTGTTCATTTCCAGGTGTTTGATGGTAACACTGATGGCACC
AGTGTG Coding sequence (CDS) from alignment at Sc0000411:94362..97267+ >transcript:BL96341_cuf1 ID=transcript:BL96341_cuf1|Name=transcript:BL96341_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3615bp|location=Sequence derived from alignment at Sc0000411:94362..97267+ (Branchiostoma lanceolatum)
GAGTACCTGGAGGTCCAGTTTGAAGAGCCTATTGAGATCACCTCCATCAC
TACCCAGGGAGGTGGAGACGAGGGTTATGTGACTAAGTACAAGGTGGCCT
ACTCTGTAGATGGGGAGGAGTGGACATTTGTCACTGAGCCTGCAACTGAG
GAGGGACAGGAACCAGTGGATAAGCTGTTTGATGGCAACACTGATGGCAC
TACCCCAGTAACAACGGAGTTGTCTGAACCAGTGGAGGCCAAACTGGTGC
GAATCTTCCCTGAAGACTGGGAAGAAAACATCGCTCTTAAGGTAGAGCTG
AACACAGAGGAGACTGAAACTCCAGAACCAACTTTCACAGCTTCTTCATC
TGAGGCTGACCATCTACCAGAAGATGCACATCTTAAGCCTGAGGACAAAA
CAACAACACCTGTCACACCTGAAGGAAAGACAACACCTGGTACACCTGAA
GACAAGACTACACCTGGTACAGAGATCACACCTGAGTACTGGTCACCTGT
AGAGGATAAACCAGAGGAGTACCTGGAAGTACAGTTCAAAGAACCAGTAC
AGATCACATCCATAGTAACCCAGGGAGGAGGAGACGAGGGTTATGTGACT
AAGTACAAGGTGGCCTACTCTGTAGATGGGGAGGAGTGGACATTTGTCAC
TGAACCTGGAACTGAGGAGGGACAGGAACCAGAAGAACAGGTGTTTGATG
GTAACACTGATGGCACCAGTGTGGAGTACCTGGAGGTCCAGTTTGAAGAG
CCTATTGAGATCACCTCCATCACTACCCAGGGAGGTGGAGACGAGGGTTA
TGTGACTAAGTACAAGGTGGCCTACTCTGTAGATGGGGAGGAGTGGACAT
TTGTCACTGAGCCTGCAACTGAGGAGGGACAGGAACCAGTGGATAAGCTG
TTTGATGGCAACACTGATGGCACTACCCCAGTAACAACGGAGTTGTCTGA
ACCAGTGGAGGCCAAACTGGTGCGAATCTTCCCTGAAGACTGGGAAGAAA
ACATCGCTCTTAAGGTAGAGCTGAACACAGAGGAGACTGAAACTCCAGAA
CCAACTTTCACAGCTTCTTCATCTGAGGCTGACCATCTACCAGAAGATGC
ACATCTTAAGCCTGAGGACAAAACAACAACACCTGTCACACCTGAAGGAA
AGACAACACCTGGTACACCTGAAGACAAGACTACACCTGGTACAGAGATC
ACACCTGAGTACTGGTCACCTGTAGAGGATAAACCAGAGGAGTACCTGGA
AGTACAGTTCAAAGAACCAGTACAGATCACATCCATAGTAACCCAGGGAG
GAGGAGACGAGGGTTATGTGACTAAGTACAAGGTGGCCTACTCTGTAGAT
GGGGAGGAGTGGACATTTGTCACTGAACCTGGAACTGAGGAGGGACAGGA
ACCAGAAGAACAGGTGTTTGATGGTAACACTGATGGCACCAGTGTGGAGT
ACCTGGAGGTCCAGTTTGAAGAGCCTATTGAGATCACCTCCATCACTACC
CAGGGAGGTGGAGACGAGGGTTATGTGACTAAGTACAAGGTGGCCTACTC
TGTAGATGGGGAGGAGTGGACATTTGTCACTGAGCCTGCAACTGAGGAGG
GACAGGAACCAGTGGATAAGCTGTTTGATGGCAACACTGATGGCACTACC
CCAGTAACAACGGAGTTGTCTGAACCAGTGGAGGCCAAACTGGTGCGAAT
CTTCCCTGAAGACTGGGAAGAAAACATCGCTCTTAAGGTAGAGCTGAACA
CAGAGGAGACTGAAACTCCAGAACCAACTTTCACAGCTTCTTCATCTGAG
GCTGACCATCTACCAGAAGATGCACATCTTAAGCCTGAGGACAAAACAAC
AACACCTGTCACACCTGAAGGAAAGACAACACCTGGTACACCTGAAGACA
AGACTACACCTGGTACAGAGATCACACCTGAGTACTGGTCACCTGTAGAG
GATAAACCAGAGGAGTACCTGGAAGTACAGTTCAAAGAACCAGTACAGAT
CACATCCATAGTAACCCAGGGAGGAGGAGACGAGGGTTATGTGACTAAGT
ACAAGGTGGCCTACTCTGTAGATGGGGAGGAGTGGACATTTGTCACTGAA
CCTGGAACTGAGGAGGGACAGGAACCAGAAGAACAGGTGTTTGATGGTAA
CACTGATGGCACCAGTGTGGAGTACCTGGAGGTCCAGTTTGAAGAGCCTA
TTGAGATCACCTCCATCACTACCCAGGGAGGTGGAGACGAGGGTTATGTG
ACTAAGTACAAGGTGGCCTACTCTGTAGATGGGGAGGAGTGGACATTTGT
CACTGAGCCTGCAACTGAGGAGGGACAGGAACCAGTGGATAAGCTGTTTG
ATGGCAACACTGATGGCACTACCCCAGTAACAACGGAGTTGTCTGAACCA
GTGGAGGCCAAACTGGTGCGAATCTTCCCTGAAGACTGGGAAGAAAACAT
CGCTCTTAAGGTAGAGCTGAACACAGAGGAGACTGAAACTCCAGAACCAA
CTTTCACAGCTTCTTCATCTGAGGCTGACCATCTACCAGAAGATGCACAT
CTTAAGCCTGAGGACAAAACAACAACACCTGTCACACCTGAAGGAAAGAC
AACACCTGGTACACCTGAAGACAAGACTACACCTGGTACAGAGATCACAC
CTGAGTACTGGTCACCTGTAGAGGATAAACCAGAGGAGTACCTGGAAGTA
CAGTTCAAAGAACCAGTACAGATCACATCCATAGTAACCCAGGGAGGAGG
AGACGAGGGTTATGTGACTAAGTACAAGGTGGCCTACTCTGTAGATGGGG
AGGAGTGGACATTTGTCACTGAACCTGGAACTGAGGAGGGACAGGAACCA
GAAGAACAGGTGTTTGATGGTAACACTGATGGCACCAGTGTGGAGTACCT
GGAGGTCCAGTTTGAAGAGCCTATTGAGATCACCTCCATCACTACCCAGG
GAGGTGGAGACGAGGGTTATGTGACTAAGTACAAGGTGGCCTACTCTGTA
GATGGGGAGGAGTGGACATTTGTCACTGAGCCTGCAACTGAGGAGGGACA
GGAACCAGTGGATAAGCTGTTTGATGGCAACACTGATGGCACTACCCCAG
TAACAACGGAGTTGTCTGAACCAGTGGAGGCCAAACTGGTGCGAATCTTC
CCTGAAGACTGGGAAGAAAACATCGCTCTTAAGGTAGAGCTGAACACAGA
GGAGACTGAAACTCCAGAACCAACTTTCACAGCTTCTTCATCTGAGGCTG
ACCATCTACCAGAAGATGCACATCTTAAGCCTGAGGACAAAACAACAACA
CCTGTCACACCTGAAGGAAAGACAACACCTGGTACACCTGAAGACAAGAC
TACACCTGGTACAGAGATCACACCTGAGTACTGGTCACCTGTAGAGGATA
AACCAGAGGAGTACCTGGAAGTACAGTTCAAAGAACCAGTACAGATCACA
TCCATAGTAACCCAGGGAGGAGGAGACGAGGGTTATGTGACTAAGTACAA
GGTGGCCTACTCTGTAGATGGGGAGGAGTGGACATTTGTCACTGAACCTG
GAACTGAGGAGGGACAGGAACCAGAAGAACAGGTGTTTGATGGTAACACT
GATGGCACCAGTGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000411 | genome | Sc0000411:94362..97267 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96341_cuf1 |
| Biotype | protein_coding |
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