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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96331_cuf2 >transcript:BL96331_cuf2-protein ID=transcript:BL96331_cuf2-protein|Name=transcript:BL96331_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=117bp
GTSNAVVTVGPIELSEDTLWVSLWTTLQVLPINLIIVQIFRRCRPKGAPK
ASGSKLPYWFLYVGWAMLALTTLASGFFLLLYSVEWGRDKSVQWLTAFGL
AFLQSMVVVQPVQAVVL Run BLAST on NCBI mRNA from alignment at Sc0000216:442551..444563- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96331_cuf2 ID=transcript:BL96331_cuf2|Name=transcript:BL96331_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2013bp|location=Sequence derived from alignment at Sc0000216:442551..444563- (Branchiostoma lanceolatum)
AGGGGACGTCTAACGCCGTGGTCACCGTCGGGCCCATCGAGGTATTTTGT
CTTTTACCTCTTTACCTACCTTATAATCTAAGTAGATACAACTTTGTTGT
ACGGATGTGACTAGGCCACAATCTAGCGCCTGTCATATCCAGGTTCAGTA
TGTGAAAATGGTCCTAACACCAGGTGTCCGCCTGGTACCTCAACATTTCT
GCCTCTTCACATATTCAGAAAGCAATATACTTTGACTGATTCCTCTCTTA
GGATCATTCTCTGCATGTGTGTCACGAGTGATCTGACACCGTCTCAGATC
AATGCGATCCACCGACATGGCGACCGTAAATTAGTCAAACCTTTACAAGT
GACCACCTCTACATAAGAACCATCTGGCCAAAGTGACCACCTGTTGGTAG
TCTCTTATATATGCTTCCCATTGATACAATTATTAAGAATCTTGTCTATA
ACGACGACGTGTCCACGTGACCAGATTTTATTGTTCTCCTGACTGGTCAT
CTTGGGTAGTTTTGTATCGATGACCTCACCGGCACATACTCTATCAATTG
AAAGAATTCTACCCTCTGTTTTGTACAGCTGTCTGAGGACACCCTGTGGG
TGAGCCTGTGGACCACACTGCAGGTTCTCCCAATCAACCTCATCATCGTG
CAGATCTTCCGCCGCTGCCGCCCTAAGGTGAAAATAACATCGCATTCCTT
GTTCTATAAACCTGTACTTATGTTTTAGCTTCTTGCATAAAGTTGACTGT
CTCTTCAAAGGATTATTGATTGAGAATCGTTGATGTTACATATTCAAGCT
AGACAATGACAGTTTCCGCAGTATCTTATCAGCAGATATTTTGATTGTCA
GCTATTAACAAGTAGCTTGAATCACTACTTTACATGTAGCAAGTAGAATC
AACGTTAAAGTCAGCTCTCAAAGTTATTTGCGTCGTTTACTGGGCATCAA
AACAAAACAGGACGCAACCAAGCACAACAGTTAACTATAGCTAGAAAGAG
ATTTGATAGCTACCATGTATAATTTATCACGATACAGACAGTGGTACTTT
ATCCAAATGTGTCATGTATGTTCCAGGGCGCCCCAAAAGCTTCAGGCTCG
AAGCTGCCGTACTGGTTCCTGTACGTGGGCTGGGCGATGCTGGCCCTGAC
CACCCTGGCCTCGGGGTTCTTCCTGCTGCTGTACAGTGTGGAGTGGGGGA
GGGACAAGTCCGTCCAGTGGCTCACAGCGTTCGGACTGGCGTTCCTACAG
TCCATGGTGGTGGTCCAACCAGTACAGGTAAACTCATCTACTTCAACCTT
TTTTCTTACAGCGGAACTCTCTTAAGATATCACTTACCGGTTTTTGCTTT
CGCCAAATTCTCCTTGTGTCGTGTTGGCATAATGGTAAGGGTGTTTGGCC
CAGAATCCAGAGGTCCTGCGTTCGAATCCCCTGACATGCCGCTGATGTTG
TGCTACCATATCAAGCTTATCGTATTCTTTTTTTATCTAGCACTGTTGAA
ATAAGTTTACAAGCAGTGCCGCATTTTCCTTGTCTCTGTCCAGCACCAAA
TCCTGAAATAAATGTAACTAACGTTACAAAAAAATCGCCAAAAATCGTCA
TTTCAATATATACTCGTTGACACGCATAATTCTTGATGTATTACTATCAT
GTACATTCCTGCAAAGTTATATTGATAAACATCGAAGTACAAGCCTATAA
CAGCCTTTTTTTCTTTAAATGGGCGTGGCCTTATAAATCTTGATGACGTA
ATCATGACGTCATACTAATTTGCAGAAATCATCACCTTGCTATAAGGTAC
TATCTGAAAAAAGTAAGGTTGAGGAAAGTTTATAAAGCTTACAATATTGC
TTTGCAATAACATCCCAAAACCCCTCAGCAACCCTTCAGCGGTACCTTAA
GTTATTACCTGTAAAAGAAGATATTAGCTATGTTACGCATTCAGGCTGAC
ATTGAACTTACGAATAGTCATCATCACTATTATTATATTCTTGAATTAGG
CTGTTGTTCTGAC Coding sequence (CDS) from alignment at Sc0000216:442551..444563- >transcript:BL96331_cuf2 ID=transcript:BL96331_cuf2|Name=transcript:BL96331_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1404bp|location=Sequence derived from alignment at Sc0000216:442551..444563- (Branchiostoma lanceolatum)
GGGACGTCTAACGCCGTGGTCACCGTCGGGCCCATCGAGCTGTCTGAGGA
CACCCTGTGGGTGAGCCTGTGGACCACACTGCAGGTTCTCCCAATCAACC
TCATCATCGTGCAGATCTTCCGCCGCTGCCGCCCTAAGGGCGCCCCAAAA
GCTTCAGGCTCGAAGCTGCCGTACTGGTTCCTGTACGTGGGCTGGGCGAT
GCTGGCCCTGACCACCCTGGCCTCGGGGTTCTTCCTGCTGCTGTACAGTG
TGGAGTGGGGGAGGGACAAGTCCGTCCAGTGGCTCACAGCGTTCGGACTG
GCGTTCCTACAGTCCATGGTGGTGGTCCAACCAGTACAGGCTGTTGTTCT
GGGGACGTCTAACGCCGTGGTCACCGTCGGGCCCATCGAGCTGTCTGAGG
ACACCCTGTGGGTGAGCCTGTGGACCACACTGCAGGTTCTCCCAATCAAC
CTCATCATCGTGCAGATCTTCCGCCGCTGCCGCCCTAAGGGCGCCCCAAA
AGCTTCAGGCTCGAAGCTGCCGTACTGGTTCCTGTACGTGGGCTGGGCGA
TGCTGGCCCTGACCACCCTGGCCTCGGGGTTCTTCCTGCTGCTGTACAGT
GTGGAGTGGGGGAGGGACAAGTCCGTCCAGTGGCTCACAGCGTTCGGACT
GGCGTTCCTACAGTCCATGGTGGTGGTCCAACCAGTACAGGCTGTTGTTC
TGGGGACGTCTAACGCCGTGGTCACCGTCGGGCCCATCGAGCTGTCTGAG
GACACCCTGTGGGTGAGCCTGTGGACCACACTGCAGGTTCTCCCAATCAA
CCTCATCATCGTGCAGATCTTCCGCCGCTGCCGCCCTAAGGGCGCCCCAA
AAGCTTCAGGCTCGAAGCTGCCGTACTGGTTCCTGTACGTGGGCTGGGCG
ATGCTGGCCCTGACCACCCTGGCCTCGGGGTTCTTCCTGCTGCTGTACAG
TGTGGAGTGGGGGAGGGACAAGTCCGTCCAGTGGCTCACAGCGTTCGGAC
TGGCGTTCCTACAGTCCATGGTGGTGGTCCAACCAGTACAGGCTGTTGTT
CTGGGGACGTCTAACGCCGTGGTCACCGTCGGGCCCATCGAGCTGTCTGA
GGACACCCTGTGGGTGAGCCTGTGGACCACACTGCAGGTTCTCCCAATCA
ACCTCATCATCGTGCAGATCTTCCGCCGCTGCCGCCCTAAGGGCGCCCCA
AAAGCTTCAGGCTCGAAGCTGCCGTACTGGTTCCTGTACGTGGGCTGGGC
GATGCTGGCCCTGACCACCCTGGCCTCGGGGTTCTTCCTGCTGCTGTACA
GTGTGGAGTGGGGGAGGGACAAGTCCGTCCAGTGGCTCACAGCGTTCGGA
CTGGCGTTCCTACAGTCCATGGTGGTGGTCCAACCAGTACAGGCTGTTGT
TCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000216 | genome | Sc0000216:442551..444563 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96331_cuf2 |
| Biotype | protein_coding |
|
