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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96329_cuf7 >transcript:BL96329_cuf7-protein ID=transcript:BL96329_cuf7-protein|Name=transcript:BL96329_cuf7|organism=Branchiostoma lanceolatum|type=polypeptide|length=168bp
MEPSRDEVTREEAVEKLETHLSEVKAVQKVERKKAGVGPRTVRTNRKLYQ
QPTTKRVLVYPNGESADKAVYAWGANLPQLLESCTIRLSLQRAARTLYTA
DGQKVQSWEDVERDQLLCVSSGESYMNNKASRRKVEVKAAWSRARKQEGM
EATDVLMVTPRTNPKVEG Run BLAST on NCBI mRNA from alignment at Sc0000216:298450..304747+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96329_cuf7 ID=transcript:BL96329_cuf7|Name=transcript:BL96329_cuf7|organism=Branchiostoma lanceolatum|type=mRNA|length=6298bp|location=Sequence derived from alignment at Sc0000216:298450..304747+ (Branchiostoma lanceolatum)
ATGGAGCCCTCACGGGACGAGGTCACCAGGGAGGAGGCTGTGGAGAAACT
GGAGGTGCGTAGAGAGGGACGGATTTGGGCTGTGAAATTATGATAAAATA
ATGTCGATAAAAAACGTTTCGGAATTCTGACCTAAAAACGTATTAGGCAA
ACAGTTTAAAACATTTTTCACATCACAATAACTGTTTTCAAATTCAAATA
ATTTCATTGCTCAACAATAAATGGCAACTTGGGGCCCTGAAAACAGCAAC
ATTAGGAAACTCTACTCTTAACTTATATTTATAAAAGACTACAACTTACA
GTAGCATGGGATGAGAATATATAGTCTTGTACTGTGACAGTCTTTGTTGG
CCTATCCTAAACTACAAATTAGGTACAAAGCATGGGTTGTCCTATATGGT
AACTACAAAAGTGTCAGTTACCATCATGATAGAAAAACTGTTGCATTGCC
AGTTAAGTTTGGATGTTTTAAGATTATTACTGTGCATGTACACAGAGTCA
GCAGGATTATGCAGTAATTGTTTAGCTGTATAAAGCCAAGAGATTTAAGG
AATACTTACATAGGAAACTTCCATTCCCCCTCTTCTCAGACCCACCTGTC
GGAAGTGAAGGCTGTTCAGAAGGTGGAGCGTAAGAAGGCAGGAGTGGGCC
CTCGCACCGTCAGGACCAACAGGAAACTCTACCAACAGCCAACAACGGTC
AGTTCTATAACAACCACTACACCAAAAATAGTTACTCAAGTAACTGGATA
AGATTTTGAAACTTTGAAATCTTATCCAGTAGCTTGAGTAACTATTTTTG
GCATATCTTATTACCTGGATGTCTAACCTTCATCAACATAACAAGCACTA
CTAGTACTCAGATATCATTGTGGACCAAACAGAATTGTCTCCAGGACCTG
TGTCTTTGTCTTGGGACAAAAATTTGCTTGGTGTGACGAAATTTTTTGTT
ACCATTTCCGTCCCGAAATCTGAACTTAATGACATGAAATTGATGAAAAT
GTATCCTTGTTAGCTTAAAACAACATTTTTTTTAGCAAGGAAAATTCAAC
ACAAAATTTGGCTCCCAAACAATGAGTGGGACAGAAAAAACTAGCTGGAG
ACAGCCCTGGGACCAAATCTTTGTCACTCACTCAAACTGCACAGTAGTGG
CTAAAATTTTGTTGAGCAGTAGAGAACATATTCGCTGAGAAACTTGTACC
CTGTAGCTTTGATGCTACCATTGTTTTATAATTCACAATGACTGCTTAAC
TGACCAATTGAAAAATTGGTGTGTTGAAGCTAGAGTCTGATGTTCATGTT
CATATAGACACCGTTCCAAATGTACAGTTTATTTTCTGTCAGATTGACAT
GTAGTAATTGCTGCCTGTTGTATCAACTTAAAGTGTTTTTAGTTTAGTAG
ATTACCCTTGTGAGGATGAGAACCATGCAAGCACAGAGTTTCACACAAAA
TAAATCAATTTGATTATGCAATTGTCAGAACCAGGATATCTACGTTCCCA
CAGTTAATAAACATTTTTCTGCTTCTACAGAAACGTGTGTTGGTGTATCC
CAACGGGGAGTCAGCAGACAAGGCAGTGTACGCCTGGGGAGCCAACTTAC
CGCAGGTAGGGAACACAGGAGGGGAAATCATGGGAAGGATGGAAAAATGG
AAAGATAATCAGTCATGTTAGGAAAAAAGGGAATTAGAAAGTGATCTTGA
TCCAGTTTAGCTCACCGAAGAGCTTAATACTGTAATGATTCTTGATTTGT
TAACCGTAACTTAATTTTAGCTGTTTTAACGGTCACCAGTCTACCGCTAA
AATGTCATCATCGCAAATGTTTGATCACTAACATTTTTGACAATGATGTT
TGTTCCCACCGTTGAAATTAAATGCAGTGAACTACTCACTTTTCCCCAAA
TGACTAAAATTACCAACCGCAATAATAAATAGATTTACAGTATACCTTTC
ACTGGTCATGACAGAGAAGACAGACGCTATGTACAGTATAGTTACAGGTT
CATTGCACCAAGGAGGATAAAACCTCCTTGATTGTACCAGTGAAATTCCC
CTACACAGTAGCTCTTACAATGTGGACCATGGCTTAATTTCAAGGACAGC
AACCCTTTCCAGTAGCCAAAGTGCATGTTGGGCGAGCAACAAGTCGGGAT
TAGAACTCACCACCTCTAGATCTTGATCCAGGGGCTGAGTCACGAATTAC
TGCGCCCACTACTGTAGGCTTGATAAAAATTCCTTAAACTCTCACTGACA
GAGAAATAACAGAGTGGCAGAAACAATTGCATGAGTATCTGTCTGTGAAA
TCTCCATGACTGTACATGTACATTTCCATTGTTCTCAAATTGAATTCTTT
CTAAGGCACCATGAATAATAGATATGACCGAAAATAATTTCATCAGGTTG
GTAGAACATAGGATCTCACCTGCTGACGTTTTGGTGTCTGTCAGACACCT
TCTTCAGAGCTTCTGACTGGAGTACTGCTTCTCACCGCTATAAGTAGCCA
ATGTAGGTGGCGCTTTGGCGGGGGGATACAAGCTCAGCCATATTTGGGAT
TACGCTCTTGCCGCAAAAGCGCCACCTACATCGGCTACTTATAGCGGTGA
GAACCAGTACTCCAGTCAGAAGCTCTGAAGAAGGTGTTTGACAGACACCG
AAACGTCAGCAGGTGAGATTACCTGGTTGTGTTAGAAGAAACTCCAAATA
TCCGATAGATATGACATCGCTAAACACAACTGCAAGGAAAGAAATGAAAC
AGAAATAACTGTTCAACGTTGTTGTTTTCCAGCTGCTGGAATCCTGCACA
ATCCGTCTGAGTCTGCAGAGAGCAGCACGGACACTCTACACAGCTGATGG
ACAAAAGGTGGGGTTTGCTGCTAGATTCTGAATAGCTTACAATTGTTTTT
ATTGGTTATTGTCATTGATTTGGGAAATTAGAATATTTTACTATAACTTT
GTTTTTTTTTCCAAGCTGAACATTAAATTTTGTATTATATCATTAGGCCA
CACCAATTTAATCTCTTGGTTAACGGATGTTTTGAAAAAATGCTAAATTC
CAAAAACAACATGAAAACAGAATCTCAGAGGAAAGTTTTTACTTTGGTGC
ACACAGTTTCAGGGAGTGAACAGGGTCAGGTGCAAGTTTTCACCCCAGCC
TTCTGTTGTTTTTTTCCTATAATTTAAAAAAAATCTGTTAACCGAGAAAT
TAAATTGGTGTGGCCTTATCATGTTTGTAAAACAAGAAAGCTGACATGTT
TTTACTCTCAGACAACTGACTTGTTTGTTTGTTTGCTTGTTTGTTTGTTT
GTTTGACGACTTGTTGTTGATCTGTATTATATTTCTAGGTGCAATCCTGG
GAAGATGTAGAGAGAGACCAGCTGTTATGTGTGTCCAGTGGAGAGAGCTA
CATGAACAACAAAGGTACTGGTACATTTTGTTAGATGATTTTTAAAACTG
CAATGACTGCATACAAACATACAGTGCAGGTCAGTTCTCCCTGCTGGTAT
AATATATGAAATCTTTATTGACACGACAAAAGTACAGCGACTTTCGTATG
GTCTTTTACAACTTTACATGTAAACAACAAACAATGGACATAATAATATA
TAATGATATATCTAAGCAAGGGTGTCAAAGTATATAATTTTATAATTTTG
TACCTATGAGGGACGCTTCGGTAGTTTATACTCTTAGACTAGAGACATTC
TAACCAAACTATATAGATCAGATGTAAACTTAATCTCTTACTCAAAATTT
GAGTCTTTAACACAAGTTTTGAGTCATTGACATGTATACAGTCACCATTT
TAGTCTATGACACAACATTTGAGTTTTTACCAACTGGCTATATCCTCTAA
CCAGTCCCAAGTTGGATGTATACAAGTATTTTTTCCAAGATGTAACTTTT
CTGAGGCTGCCATGGCACTGAAACATTAATTTTTAAAAATCGTTACCTCC
CTCTCCCCAGCGTCCCGCCGGAAGGTTGAGGTGAAGGCGGCGTGGTCGCG
AGCGAGGAAACAGGAAGGGATGGAGGCAACGGACGTCCTGATGGTCACGC
CGCGCACCAACCCCAAAGTAGAGGTATGACTTTCTCAGGCAAATAATGAT
GATAATGTGTGAAATGTACATTATAGAGGCAATACTAAAATGTAGTGGCT
GTCTTACTTACTTCTTTCTTGTTTGTCAGTTGTTGAGAATCAATCTTACT
TAATTTGAAAGTACGTGATCATTGAATGTACTAAGTGTTAATACGTTTTG
GTTTGTTGAAATTCTGTTGTTGTTTTTACCCGGACTGGGATCACAAAGGA
AATCCTGTTTCCCTCTGTCCGTTTACACCATGATGTAATAAAGCTGAAAC
AAATAAATAAACCATCTAAATCTAAGCCTTGGTTATTAGCAAATGGTTGG
GAATTAACCCCAATATACAAAGTAGAGGTAGCGCTTCCTGGCAGATGAAT
AATGTGTGAATTGTACATCACGTAAAATATGTTTACTGTACATTATTTGA
TATGCCAATACATGTAGATAATCTTACCTTCTTCTTCATCTCCCGTTGTT
GAGAATGAGTCTTACTTACTGTGAATGTAGACTAAGTATTATCGTGTTGG
GTCATGTAATTTTGATTATTATGTAGTTTCAACCTTCAAATTGATTATTT
AGCAAATTTGTGAATGATCAAATTCTTGCTCAAATCTTCATTTCTAATGA
TAATGATGAAATGTTTAATCCAGGTCTCTTGCCATTACTCTGAATAGGAC
TTGGTTATTGCAGTTCTTTAAAATTTACTTTGTGGTTTATAAGTTAAGAT
TTGGTAAAGGTTGAAGTTGCTGTAAGTTGCAGCTAGTGAGTAACATTGTG
TACTTTGTTGAATGTAGTTTCTATTAACTGATCTGAATGTTCTTCTTTCT
TCTATAATATTGAACATAATCAACAGCCTACAAAGATATTAGCTGTGGTT
ACTGGTTCCACTAAAAACTAATTTTGAAGCACAGTTTCACAGTTTTTTTT
AAGGCCGGGCTGCCTTTAACACATTGTAAAGTTTAAATACATATCAAGGG
GCTCCTATTCATATAAGCCACTGTTGCATGAAATGACACCTGTTAATATA
ACTGCAAGTAGCCAGCACTGTTGAAGCATGAATACATTTCAAATTGAAAT
TTGCTTTCTAGCAAATGAGAGTAGTCCCACCAGTACAACAATCATTCTAT
CCAGCACATCACACACCATTGTGATAATTGTTTAGCCTGGAGTCCAGCCT
TGTTCTAAGCTTTGGCCTCTCTGCTCCCCAAGATCCGCGACAGTCTAGCG
GATCTTGGGGAGTGGTCCAAAGCTACTGTGTAACAAGGCTGGACTCCAAG
CTAGCACTGTCTTGTAATTACAATCAAAGGTTGGTTTCTTCCGAGCTGTT
GTTATTTATACCTTTAACTGGACAAAGAAGTACAAAACTAAAAGCTTTAA
CTGTCGTTTATTTTTCATTTCAGGTTGACCCGTACGGCCCCCCAGTGCTG
GCCCTACCCGCTCCAGGAGAGGGGGGAAGTGGAAGCAAAAAGAGACCCCC
ACTCCCTCCTTCTGCTAGCAAGAGGAGGTAAAGCTGGACACCCCCAAACT
GCAGTGGTACTGCCCTGATTTCACTCAGTTTCGGATCATTCCAAGTCTAA
ATGGGGGTATAATAGGAGACATTGAAACATATTGTTAGACTGAATGTACG
TGTATATCATAGATTTCTCTTGCCTTTCCAATTTAGAGTTTGCTATTTCG
TTACAATACCAACTGTATAGGGCTTTAGATAGGCAACCTTCTATACATGT
CCTTGTAAGTTGTAGCCACAGTCAATCGTGTACATACTGTCTGATAGCTT
TTATTTGTTGTACAGAGGTAAATGATAGGCTATTTTTGAGGGACATGTAC
ATGTATATTCCTAGTAAGTGTGTTGTACCGAAAATGAGGCATGGTAATAT
ATTAATTACAAGTTAGGCAAGCAGAATGTTATCAAAAGCTGTACAGTAAT
GTTATATTTCAAAACTTGAAAGTTTGTTATCAATAAAAACATTACAGTTA
CAGTCTGTACACTTGTAAGGCTCAGTCCCTGTCTTGTATACAAAACATAT
CAAAGGAACATGACATCTTATTACATACTAATAATATGGCATGTCAGGCA
ATCTTGTTAATGGAAGGGTTTAACGGACCACTATGATAGGGTAAAGCCTT
CCATTGTCATATTGGAATGAGAGCAGACATACATGAAAGCAGAACATTTG
TGCTATGTCATGGTTTTACCCCAATGATCCCCAAAAATAGACTGATAC Coding sequence (CDS) from alignment at Sc0000216:298450..304747+ >transcript:BL96329_cuf7 ID=transcript:BL96329_cuf7|Name=transcript:BL96329_cuf7|organism=Branchiostoma lanceolatum|type=CDS|length=3549bp|location=Sequence derived from alignment at Sc0000216:298450..304747+ (Branchiostoma lanceolatum)
ATGGAGCCCTCACGGGACGAGGTCACCAGGGAGGAGGCTGTGGAGAAACT
GGAGACCCACCTGTCGGAAGTGAAGGCTGTTCAGAAGGTGGAGCGTAAGA
AGGCAGGAGTGGGCCCTCGCACCGTCAGGACCAACAGGAAACTCTACCAA
CAGCCAACAACGAAACGTGTGTTGGTGTATCCCAACGGGGAGTCAGCAGA
CAAGGCAGTGTACGCCTGGGGAGCCAACTTACCGCAGCTGCTGGAATCCT
GCACAATCCGTCTGAGTCTGCAGAGAGCAGCACGGACACTCTACACAGCT
GATGGACAAAAGGTGCAATCCTGGGAAGATGTAGAGAGAGACCAGCTGTT
ATGTGTGTCCAGTGGAGAGAGCTACATGAACAACAAAGCGTCCCGCCGGA
AGGTTGAGGTGAAGGCGGCGTGGTCGCGAGCGAGGAAACAGGAAGGGATG
GAGGCAACGGACGTCCTGATGGTCACGCCGCGCACCAACCCCAAAGTAGA
GGGTTGAATGGAGCCCTCACGGGACGAGGTCACCAGGGAGGAGGCTGTGG
AGAAACTGGAGACCCACCTGTCGGAAGTGAAGGCTGTTCAGAAGGTGGAG
CGTAAGAAGGCAGGAGTGGGCCCTCGCACCGTCAGGACCAACAGGAAACT
CTACCAACAGCCAACAACGAAACGTGTGTTGGTGTATCCCAACGGGGAGT
CAGCAGACAAGGCAGTGTACGCCTGGGGAGCCAACTTACCGCAGCTGCTG
GAATCCTGCACAATCCGTCTGAGTCTGCAGAGAGCAGCACGGACACTCTA
CACAGCTGATGGACAAAAGGTGCAATCCTGGGAAGATGTAGAGAGAGACC
AGCTGTTATGTGTGTCCAGTGGAGAGAGCTACATGAACAACAAAGCGTCC
CGCCGGAAGGTTGAGGTGAAGGCGGCGTGGTCGCGAGCGAGGAAACAGGA
AGGGATGGAGGCAACGGACGTCCTGATGGTCACGCCGCGCACCAACCCCA
AAGTAGAGGGTTGAATGGAGCCCTCACGGGACGAGGTCACCAGGGAGGAG
GCTGTGGAGAAACTGGAGACCCACCTGTCGGAAGTGAAGGCTGTTCAGAA
GGTGGAGCGTAAGAAGGCAGGAGTGGGCCCTCGCACCGTCAGGACCAACA
GGAAACTCTACCAACAGCCAACAACGAAACGTGTGTTGGTGTATCCCAAC
GGGGAGTCAGCAGACAAGGCAGTGTACGCCTGGGGAGCCAACTTACCGCA
GCTGCTGGAATCCTGCACAATCCGTCTGAGTCTGCAGAGAGCAGCACGGA
CACTCTACACAGCTGATGGACAAAAGGTGCAATCCTGGGAAGATGTAGAG
AGAGACCAGCTGTTATGTGTGTCCAGTGGAGAGAGCTACATGAACAACAA
AGCGTCCCGCCGGAAGGTTGAGGTGAAGGCGGCGTGGTCGCGAGCGAGGA
AACAGGAAGGGATGGAGGCAACGGACGTCCTGATGGTCACGCCGCGCACC
AACCCCAAAGTAGAGGGTTGAATGGAGCCCTCACGGGACGAGGTCACCAG
GGAGGAGGCTGTGGAGAAACTGGAGACCCACCTGTCGGAAGTGAAGGCTG
TTCAGAAGGTGGAGCGTAAGAAGGCAGGAGTGGGCCCTCGCACCGTCAGG
ACCAACAGGAAACTCTACCAACAGCCAACAACGAAACGTGTGTTGGTGTA
TCCCAACGGGGAGTCAGCAGACAAGGCAGTGTACGCCTGGGGAGCCAACT
TACCGCAGCTGCTGGAATCCTGCACAATCCGTCTGAGTCTGCAGAGAGCA
GCACGGACACTCTACACAGCTGATGGACAAAAGGTGCAATCCTGGGAAGA
TGTAGAGAGAGACCAGCTGTTATGTGTGTCCAGTGGAGAGAGCTACATGA
ACAACAAAGCGTCCCGCCGGAAGGTTGAGGTGAAGGCGGCGTGGTCGCGA
GCGAGGAAACAGGAAGGGATGGAGGCAACGGACGTCCTGATGGTCACGCC
GCGCACCAACCCCAAAGTAGAGGGTTGAATGGAGCCCTCACGGGACGAGG
TCACCAGGGAGGAGGCTGTGGAGAAACTGGAGACCCACCTGTCGGAAGTG
AAGGCTGTTCAGAAGGTGGAGCGTAAGAAGGCAGGAGTGGGCCCTCGCAC
CGTCAGGACCAACAGGAAACTCTACCAACAGCCAACAACGAAACGTGTGT
TGGTGTATCCCAACGGGGAGTCAGCAGACAAGGCAGTGTACGCCTGGGGA
GCCAACTTACCGCAGCTGCTGGAATCCTGCACAATCCGTCTGAGTCTGCA
GAGAGCAGCACGGACACTCTACACAGCTGATGGACAAAAGGTGCAATCCT
GGGAAGATGTAGAGAGAGACCAGCTGTTATGTGTGTCCAGTGGAGAGAGC
TACATGAACAACAAAGCGTCCCGCCGGAAGGTTGAGGTGAAGGCGGCGTG
GTCGCGAGCGAGGAAACAGGAAGGGATGGAGGCAACGGACGTCCTGATGG
TCACGCCGCGCACCAACCCCAAAGTAGAGGGTTGAATGGAGCCCTCACGG
GACGAGGTCACCAGGGAGGAGGCTGTGGAGAAACTGGAGACCCACCTGTC
GGAAGTGAAGGCTGTTCAGAAGGTGGAGCGTAAGAAGGCAGGAGTGGGCC
CTCGCACCGTCAGGACCAACAGGAAACTCTACCAACAGCCAACAACGAAA
CGTGTGTTGGTGTATCCCAACGGGGAGTCAGCAGACAAGGCAGTGTACGC
CTGGGGAGCCAACTTACCGCAGCTGCTGGAATCCTGCACAATCCGTCTGA
GTCTGCAGAGAGCAGCACGGACACTCTACACAGCTGATGGACAAAAGGTG
CAATCCTGGGAAGATGTAGAGAGAGACCAGCTGTTATGTGTGTCCAGTGG
AGAGAGCTACATGAACAACAAAGCGTCCCGCCGGAAGGTTGAGGTGAAGG
CGGCGTGGTCGCGAGCGAGGAAACAGGAAGGGATGGAGGCAACGGACGTC
CTGATGGTCACGCCGCGCACCAACCCCAAAGTAGAGGGTTGAATGGAGCC
CTCACGGGACGAGGTCACCAGGGAGGAGGCTGTGGAGAAACTGGAGACCC
ACCTGTCGGAAGTGAAGGCTGTTCAGAAGGTGGAGCGTAAGAAGGCAGGA
GTGGGCCCTCGCACCGTCAGGACCAACAGGAAACTCTACCAACAGCCAAC
AACGAAACGTGTGTTGGTGTATCCCAACGGGGAGTCAGCAGACAAGGCAG
TGTACGCCTGGGGAGCCAACTTACCGCAGCTGCTGGAATCCTGCACAATC
CGTCTGAGTCTGCAGAGAGCAGCACGGACACTCTACACAGCTGATGGACA
AAAGGTGCAATCCTGGGAAGATGTAGAGAGAGACCAGCTGTTATGTGTGT
CCAGTGGAGAGAGCTACATGAACAACAAAGCGTCCCGCCGGAAGGTTGAG
GTGAAGGCGGCGTGGTCGCGAGCGAGGAAACAGGAAGGGATGGAGGCAAC
GGACGTCCTGATGGTCACGCCGCGCACCAACCCCAAAGTAGAGGGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000216 | genome | Sc0000216:298450..304747 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96329_cuf7 |
| Biotype | protein_coding |
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