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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96327_cuf9 >transcript:BL96327_cuf9-protein ID=transcript:BL96327_cuf9-protein|Name=transcript:BL96327_cuf9|organism=Branchiostoma lanceolatum|type=polypeptide|length=152bp
MVLIDGGSLIFYDDMDVHLQAEYILIVNGGHLQAGTEDLPFQHQATITLH
GNLRSKELPIYGAKVLAVRDSTLDLHGTPVIHTWTQLAATAAAGTDTLVL
EDPVGDWQAGASVVIATTGHRHSQGETEVRQIQSVSDDGHTLTLTXHSHT
HR Run BLAST on NCBI mRNA from alignment at Sc0000460:121279..127473- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96327_cuf9 ID=transcript:BL96327_cuf9|Name=transcript:BL96327_cuf9|organism=Branchiostoma lanceolatum|type=mRNA|length=6195bp|location=Sequence derived from alignment at Sc0000460:121279..127473- (Branchiostoma lanceolatum)
GACCATATGAAGGCATAGCTACATGTATACGATTCAGCAGATGTCTAATA
TATGTTCATTATCATGAAACAATAGGCGTTCTGCAAGTACAATGACGTAA
TATCATCTCCACTCCTGAGGTGTCCCCAAAAATCTTATACAAGAAAAGTT
ATTCAGCCTTGTGCACCCTTCTGTAGGACAACGCAGACTTCTACTATGTG
GACAGGTGGTCATCGGTGTACACCTGGGGTGGGGAGGAGGCTGGTTTACC
TGTGGAGGGAGACTTCATCATTGTGGAGGAGGGACAGACTCTACTGCTGG
ACACTGACACACCTGTACTCAGGATGGTGCTCATCGATGGTACCTGATAA
ATATTTTATCTTATTTTTTATTTCATTTTATTTTATTCGCATATGTTTAC
AGAGTATTAGGCAGAAAGCATTTGCTTATTTAAAGCCTTCTACTCAAAAC
ATACAAAAGAGAGACATAATGACATGATAGTATACATTAAGTAAAAAATG
GATAAAAGGAAAATAGGAATTTCAATAGACAGTACAAGTTGGTATCTATC
ATTAGATTAATCTGCCTGCACAATGGATATATAAGTATGAACTATATCGA
GTATGTTACAGTTTTGTAAGTGTGAGAGTGACGTGGAACCGCATAACAGT
AGAGAAATGAGAAATATAGTCCCATTTGGTCTTTCAAAAAAGAAAAATGT
CTCTGTTGCTATTGTGACAATTAGTTTGCAATGATCTTCAAGCAGCAATA
AGGATCAGGATCGTAGTGAAACTACTTTTAAAATTACCATTTTGTGACAA
AAATAATGTTTACTGTAACAGTTAACGTTGGGTAACATAAATTCGTGGGG
TACTTAAATTCGGGATTTTTCGAAAACGGGGTATTTAGGGATATGTGCTA
GATGCAACATCAGTAATACCGCTAGAAATGCAAACTTGACAGACTAACGT
ATTCAGAACACTGTCTGAAAAGCTTCGATAAGCATGCATTAGAAGGCGAC
GAGGACAAAAACTCTCCGTCCCTTATTGGAACAGTCTGAGGGCTTCGTGG
GAGAATCACACTACATCGTTGTCGGCTGGTTTATAAGACAAATGTCACAT
CCGCTTCCTGCTAAACACAATCATTTACAAGACAACTTATTTTCTTAAAA
TTGCTGACCTGCAATTGGACTCTAAGTGTGATCAATCATCAAAACCCCTC
TTTGTTGCTACAACCTACGGCACGTGTATTTTCCCGCCGCCATATCATTA
CCCAGAATCCTGTTGTCAAGCAGACGACAAAGGTTTGTGAGGAACACTTT
TTTGTCTAAATGTTGCGTGTGATTGTGGACTGAGGACGATATTTTCCTCA
AAGTTTGCTCCTAACACAACAAGGAATACATGGACATAGTAGTATTATCA
ATGCTACGGCATCCGGCTAACTTTCCATGAATAATGTACACGTTGCCATG
ACGGTGGATGTCGACTTTGACGTTCTATAGCTACCGACTCAACACACGGG
TTGTTCCCGTAGGCCTGATGTGTGCGGTACGGCCGTTTTTTCGTGTATTT
TTTTACTTGGACACGTCTATATCCATAGCACTCTCCTCAAGCCAAGGATG
GAACGAATAGCTGCTGTATAAAATGTAATTAGCGGTAAGATATTCAAGAC
GAATCTTCTCTCCCGAATTAATGTTCACCCCTGTCCGACAGCACCGTCAT
TGTGCGTGCGGCGGACGGTAGTTTCAAGTTGAAATATTATGGTGTCAGCA
CGACTAGAGACAAAATCTACCATATATATGATTAGTGCAAAGATAGTACA
TGATACTGACAGAATAATAGAAAAAAAGGATGGTTTATTGTTCTGCTAGA
TTGATTTCAGTCAACCATTATCGGAAAAATCCCGAATTTATGTTACCCAA
CGTTACATGATTAATGCAAAAGGCTTATTTGCTTGCAACTTTGCCATTGG
TGTGAGTCTTCATATAGCTTTATCAGAGTTCATGATATGCTTTTGATGAC
GTTAAAAAACCACCACACTTCTCAGCAAGAGCAGATTGAAGTATACCTAG
TGATAGTATTTGCAAACTCCATTTGACGTGTACACATTCAATTGGTGTTC
GAACTTGCTAATCGAATTATGCAGTTCACATTCTTTAGAATCTGTACATT
CTATCACTTGGGATGCTCCCGTTATATGTATAAGCTCAGCTGATAACAGC
CTCACAGTTAAGTGCTTTGTTACAATAGTTGGTAACTGGGAGACCCCTCT
TCAATCCTGGGTAGGGCATCTCAGTCGGCGCTGCTCCAGTCTTTTAGAAG
GGATGTAATTTAAGAATCAGGGTCCCTTTTTCGTTGTGCCTGAAGCATGT
TAAAGAAAAAGGGCTAGCAACTGGGTACCCTTCCTTACTAGTGAGAATAT
CTCCTGCTACTGAAACAGTAAGGAAACTCGCTGCCCTATGTGCCACTAGA
ATGATCTGAAAGAACAACTTATCATTAATCAAATCAAATGTGCAATTCAC
ATCCAAATGTAGACTTTGTACGTTCTATAACTGCTATGATCATACCTAAT
AAATTTGAAATTTCTGTAGGCGGTTCTTTAATCTTCTATGATGACATGGA
TGTGCATCTGCAAGCTGAGTACATCCTCATTGTGAATGGAGGGCATCTCC
AAGCCGGTACAGAGGACCTTCCGTTCCAACACCAGGCCACCATCACTTTG
CACGGGAATCTGCGGTCCAAGGAGCTGCCGATCTACGGCGCCAAGGTTCT
GGCCGTGAGAGACTCGACATTGGACCTTCATGGTACTTAATATAATCATG
TATTCTGTGCCTATGAACCTGGTATAACCACCTTTCGGTGCTAACATTTT
CTGTATCAGTATGTAACCTGTATTAACATTAATCCGCCGGGTTACATAAA
TCTGCCACTTTGAAAAACAGTGGGTTTGAGAGATCTCTAGTGCAGCACCC
CAGGTATGCACAGTTTAGATACATGTATACGAGTGCATTATACTTTGTGA
CGTTGGGTCTTTTCAGGGTGACGGAATTATGTGCCCTGGTGGAATTATGT
TTAGTAGATGTTATATAGCTGTTATAACCACCCTTTGGTGTAAGTCACGC
CAGCTTCGCAGGCACATGGCGCGTCAGCAGCTGGTTATATAACCACCTGT
CAAATCTGAAGTGTCAGTTTTCAGAAATTGCCAAGATTTATGACAAGGTC
ACAATATATCAAACATTCTTAGGTTCTAAAATCATCAGAAATTTTGGAAT
TTTGACATGGTCTTTAAGGTTAACTTTGTTGATCTTAATTTGTTCATCCA
CTATGATTCTAAAATCATTCTTTGATTAGCTCACTGATTGAGTAAGAGGC
CTTTCTAGTCAAAAGTGAATCATCTGACAGTGACCTATAGCATCTCCAAT
GTACATTGTATTACTTGGCAAAGGTGAATAGCTAGCAATACAGTACATTG
TAGAATGGAGCAAGATCTACCATGATGTTAAACTTTCAATTCGATTATGC
AGTGCATTTTGCATTGAGTAACCAGACCCATAAAAATGTTATAGGGGCTT
GAAACTTGTTGTCGTCATAAGATTTTATAAAAAAGGAATTTGGTTTTTGG
ATTCAAATTTGATTTGACCAGAGTTTAATGAATCTAAAATGTTTATTACA
CCAAAATACAACATTTTCTGATTTATGCAATAATAGTAGTATTGTTCAAT
GAAAACTCTTGAAAAGATTCTTCTGAGAAGTAGAAAAGCAAACAAAAATG
CAATCGTATGTCATTTACAATATCATGATAATTTTCTTCTCAAAAGTACG
TTTTTCACGAGTCACTGTACAAAGTTCTGAACCGATTGCTGCGTCTGATT
CAATGTTCAATAACATCCAATTCAGAAAGGTTGTCTATTTTTGTACAAAC
ATTAAAAGAAATATGTTCATTGACTAATCTTATACAGTAACTTATAATGG
TTACTTGTAATCAGAAACAGTAACAGTAAAGTTGCAGTTTAGTGTCATTG
ATGACACAAGCACTTTAATTGTCTTAGGCACGCCTGTGATTCATACCTGG
ACCCAGCTGGCTGCAACAGCGGCAGCCGGGACAGACACCTTGGTCTTGGA
AGATCCAGTTGGTGACTGGCAGGCTGGAGCCAGCGTTGTCATAGCAACCA
CCGGACATCGCCACTCCCAGGGAGAGACGGAAGTGAGGCAAATCCAGTCT
GTAAGCGATGATGGACACACCCTCACACTCACANCTCACAGTCACACTCA
CAGGTAACGTCCATCTTATTCCTTTATCTTCTATTTCTGTGATGGTTATT
GCTAAAGCTCCTGTCACACAGTCAGCAAGCTTTGGTTGTTAGTATTGATT
TTGTTGATTGCCTGAATTAGAAGGTTACCCAATTTTGAAATTGACAGAAT
CTCTTGTTACAGTATTGTTTACCTGAAAATCTACCTTATCATATCTATCA
TATCCGCTGTTCATCACACAAGGCTCCGTCTAAACTTCAGTTACGTTAAA
ACACCATCTATTTCAACAACATGTATAAAGGGGGTTATTATAAGTGAAAC
AACTGAACACTACCTTCTACACTGTAAACTTGATACCAGCCAAAGAAGTA
CTCTGTTATCATCTCTTTCCAATATAGTAGAGCTAAAGCATCTCAATGAC
AGTACATTTTATGTTCTTTACTGCTAAGAGGGTCCTTGTCACTTTCACAT
ACACAAAACTGTAATCATATTATATCTTTATAGTCCATACTGTCATTCAC
TGTACACTGCAGGTAGATTCTCGTAATTGATAGATCACCAACTTGTCTTG
TTTACATTCATTTTTCTTTTATCCATTCTTTGATTATATTTCACTCCCCA
TAACAAACTCCATGAACTGAAATTTAGCATGAAGGTAGAGTGGCCCAATA
CCCCCAGTCATTGTTTTTTTTTGGAAAAAGGGCTTTGAAATTATTCTGTT
GAGGTTTTTGGCCCCAAAAAATGTATATTTTGGGCTCCTGTTCCCTGGCA
TTATAACCAAATGACCTGAAATTCGGTATGAGGGTGCCTTGAACATGTGC
CCACAGGACTTCATTCACCTTTCTGGTATATACCACTTCAAAGTGACTCA
TTTTGGGGACTTTGGGGCTTATTTTCAGACCAAAAACGGGCCCAAAGTGC
TATCCCCGCTCCACGTTCGATCTATGGCTGGACCCGTTCCATCTGCTGTT
GACTAATGAACACATGTTATCTGAGGTCACGTTGTAGGAACACTCGCGCA
ATGAACAACACATTCAAATTTATGCAGCTTAGATCATTACATGGGGGAGG
GAGTGAAATATGCTGTATTTGCTCATGCATAAGCAAATGTCGGCCTGTCT
AGTTATGTTTGCATTTTGTCATTGTATTTTTCTCTAACTTGTTCTATTTT
TATGTTTTCGAGTAGAAGGTGTTATGTAAACAATTTTGCCAAATTTTGCC
TGATGCTTGTTAATTATCATTCAATGAATTTCAAAAAATCATATCTAACG
GGCTAAGTGACCTGCGAACACTGGCTGATTGCATAAAATTGCAAGATGAT
CGAGAGAACACCGGGTATATTACTGCCAAAAATGTCCTTTAGAGATTGCA
CACTCGTCAACTTTTGTACGGTGTAACAGGGGCTTTAGGGTAGACCCACA
AGATATGAGATTATAATTTTATTATGGTGTCCAACAGTTTTGGGGCTCCT
AAGTTTGGTATACAAATACATGCAACTCACTGTCCACCAATGATACATTG
TGCGATGACATTGTAGTCGTATCGTCAAGTCTCTTCCATTGACCATAATA
CATGACTGTTCATCAATCCACTAACACGTAATGTAATAAATTTACATTAT
TCTAAGGAGAAAAAGTTGAAACAATTTACAATGTTAGAAGTCTTGTTTAA
CCTCAGCTTGAAGTCTAATTTATAGATACATGTAGGAACGTGCCATCAGA
ATGTTGCAATTATAGCAGTATGATATTTTCTGTACTTATAATTATGGTTT
AGTTATATCAAAGGAAAAAAGAATTTCAAAGCAAACAATTACATTAAATT
GAATTAGGAAGTTTAAGACTTAGTTTTGACTGGGTGTAGTCACATTGACC
AGACTGGCGGAAGACCGCCAGCAGTGGAGAGATTTCACTGAGAGCCATGC
TGCCCCGACTAAGAGAGCCATGCTGCTGACTAAGCTATGGGAGAG Coding sequence (CDS) from alignment at Sc0000460:121279..127473- >transcript:BL96327_cuf9 ID=transcript:BL96327_cuf9|Name=transcript:BL96327_cuf9|organism=Branchiostoma lanceolatum|type=CDS|length=1377bp|location=Sequence derived from alignment at Sc0000460:121279..127473- (Branchiostoma lanceolatum)
ATGGTGCTCATCGATGGCGGTTCTTTAATCTTCTATGATGACATGGATGT
GCATCTGCAAGCTGAGTACATCCTCATTGTGAATGGAGGGCATCTCCAAG
CCGGTACAGAGGACCTTCCGTTCCAACACCAGGCCACCATCACTTTGCAC
GGGAATCTGCGGTCCAAGGAGCTGCCGATCTACGGCGCCAAGGTTCTGGC
CGTGAGAGACTCGACATTGGACCTTCATGGCACGCCTGTGATTCATACCT
GGACCCAGCTGGCTGCAACAGCGGCAGCCGGGACAGACACCTTGGTCTTG
GAAGATCCAGTTGGTGACTGGCAGGCTGGAGCCAGCGTTGTCATAGCAAC
CACCGGACATCGCCACTCCCAGGGAGAGACGGAAGTGAGGCAAATCCAGT
CTGTAAGCGATGATGGACACACCCTCACACTCACANCTCACAGTCACACT
CACAGGTAAATGGTGCTCATCGATGGCGGTTCTTTAATCTTCTATGATGA
CATGGATGTGCATCTGCAAGCTGAGTACATCCTCATTGTGAATGGAGGGC
ATCTCCAAGCCGGTACAGAGGACCTTCCGTTCCAACACCAGGCCACCATC
ACTTTGCACGGGAATCTGCGGTCCAAGGAGCTGCCGATCTACGGCGCCAA
GGTTCTGGCCGTGAGAGACTCGACATTGGACCTTCATGGCACGCCTGTGA
TTCATACCTGGACCCAGCTGGCTGCAACAGCGGCAGCCGGGACAGACACC
TTGGTCTTGGAAGATCCAGTTGGTGACTGGCAGGCTGGAGCCAGCGTTGT
CATAGCAACCACCGGACATCGCCACTCCCAGGGAGAGACGGAAGTGAGGC
AAATCCAGTCTGTAAGCGATGATGGACACACCCTCACACTCACANCTCAC
AGTCACACTCACAGGTAAATGGTGCTCATCGATGGCGGTTCTTTAATCTT
CTATGATGACATGGATGTGCATCTGCAAGCTGAGTACATCCTCATTGTGA
ATGGAGGGCATCTCCAAGCCGGTACAGAGGACCTTCCGTTCCAACACCAG
GCCACCATCACTTTGCACGGGAATCTGCGGTCCAAGGAGCTGCCGATCTA
CGGCGCCAAGGTTCTGGCCGTGAGAGACTCGACATTGGACCTTCATGGCA
CGCCTGTGATTCATACCTGGACCCAGCTGGCTGCAACAGCGGCAGCCGGG
ACAGACACCTTGGTCTTGGAAGATCCAGTTGGTGACTGGCAGGCTGGAGC
CAGCGTTGTCATAGCAACCACCGGACATCGCCACTCCCAGGGAGAGACGG
AAGTGAGGCAAATCCAGTCTGTAAGCGATGATGGACACACCCTCACACTC
ACANCTCACAGTCACACTCACAGGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000460 | genome | Sc0000460:121279..127473 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96327_cuf9 |
| Biotype | protein_coding |
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