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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96323_cuf11 >transcript:BL96323_cuf11-protein ID=transcript:BL96323_cuf11-protein|Name=transcript:BL96323_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=261bp
TQNSAVLEIDRVTVEDSGVYTCESNNNIGISESSVQVIVSEARVGPDEVP
VVTITPPFSTVVEGDPAEFKCTATGSPPPRLRWQKIGGAQPPRYQVQQGT
LTIPSVRREDEGEYSCTAVNYAGEASLAARLVVQVIPMVSIDQETMTVSP
GEEVRLRCEAEGTEPIMYEWTRVDGDMSTRATTSGGLLIIQQVTTEDMGQ
YRCLITNPAGIAEGFTNIIVTAEPTIKTISPKESMREAGSTAEFGCAAAG
FPVPSIQWFKE Run BLAST on NCBI mRNA from alignment at Sc0000020:82695..87630+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96323_cuf11 ID=transcript:BL96323_cuf11|Name=transcript:BL96323_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=4936bp|location=Sequence derived from alignment at Sc0000020:82695..87630+ (Branchiostoma lanceolatum)
ATACCCAGAACAGTGCAGTGTTGGAGATTGACCGCGTGACCGTGGAAGAT
TCAGGAGTCTACACCTGCGAGTCTAACAACAACATCGGCATCTCAGAGTC
TTCAGTTCAAGTCATAGGTATGTACAAAATGTAGCAATACCGCCTTCTTT
TGCTTTTATGTCTTAACCGAAGTTGTTGTAAACAGTTTAAGTGTCAGTAA
AGTTAAGAAACCAGAAACTGATTGAGACCATGACAATGTTTTGGGAATGC
AAAATATACCCTGTAATTATTCTGCGTTATCACAGTGACTGTATATACAC
ATGTATGTGTACATGTATAATGGAAGACGTGTATATGGTAATTTTTTTAA
CCTTAAGCACTCTAAAGTAACCGTTTGGCTACTAGTTCGCTATTAGTTAT
TAGGCAGCAGGGAGAAGGTTAAGCATGAAAGACCATAGTTTTGAAAAAAA
AATGTTAACGATCTCGCTCAATGCAAGGCCGAGGGCCACTTTAAGCATTG
AACTAATAATTGTTATTGTCTTTGCAGTTTCTGAAGCAAGAGTAGGACCA
GACGAGGTTCCGGTGGTGACCATCACTCCTCCGTTCTCCACTGTTGTGGA
GGGAGACCCTGCTGAGTTCAAGTGCACGGCAACAGGTAAGGATCGAATTG
TGTCATGCCTTTGTTTGTACAGCAGATATTAAGTGGAAAGGATTTCATGA
TAGCATCCAGGGTTCTAGCTAGCTTAATTTTTTTTCAATCATCCCAATTC
TCATTGATTTGCGGAAATATCCTACAAAGAGTTTTCTTTTTTTCTGTCAC
CTTGAACAAACTTCTGTCAATTTATTCAAATATGGACATTTTTAAATATC
AAAACTTTACTCATGGATTTTTGTTAAGGTTGACGGAATAGTTTCAAAAT
TTTCCCATCACATGCTACAAAATTCAGTCAAATGATGGAATGATGAGGGG
TGCTTGCTAGAGCCCTGATAGCATCTCTAAAGAGACATTTAAACTAAATC
TTTACATTTTTAATTGTAATATGATTAAGTTGGATACCTTCATGAAGGCT
CAAGGCCATGGGTAAAGTATGCCAATCAAGTTTCCTGACACCAAGACTGC
TTTCTCCACCACTTGGTATTGTATGGCTGTAGAATTTTTTATTCCAAGTA
GCCTACAATGAACATGTACTTGAAATACTAGGATAACAGTTGAAAAGGGG
ACCAAAATTGTCAACTGACAAAACTTCATCCTATGAATGCAGGTTCCCCA
CCCCCAAGGCTCCGATGGCAGAAGATCGGAGGTGCCCAGCCCCCCAGGTA
CCAGGTGCAGCAGGGCACCCTGACCATCCCCAGCGTACGCAGGGAAGACG
AGGGAGAGTACTCCTGTACTGCTGTGAACTACGCAGGGGAGGCTAGTCTG
GCTGCAAGGCTTGTAGTGCAAGGTATGGTAGTGATAAAGTTGTTTTTTTT
TAATCTGAAAGGCAGAAATATTGTTTTGTCATCAATAGAAGCTAGTATGA
CTGATTCAGATTCAGCTTTATTTCTGATTGGCATTGCATGTAAGACTGCA
AGACTTGTTATAAATATTGCAGTCGAATACATAGAGGGAAGGTTTATGTG
AAATGGAATACATACTACACTGTAACTGTTACTTTTACTTCAGAAGCTAG
ATGTAGTCTGGTTAAAAGGCTTAGTCTTGACAAGCAATGGCTAAGCAAAT
AAAGTGGAGGAAGAAAAATAACCACTGCAGGCATGATTGCAGGTATATAC
AGTACTGTGATTTTGAACTGACTTTTAACATAACATTTGCTGCGTGTTCT
GTAATGATTTATGTGTGGGTCATGACACCAGCAATATCTACCTGTGTCCC
ACGTATATTGTACTGTTGCAATTCAAATCAAATCAAATGAAACATTGTTT
GAGGTGCAACTTATTGAAACAGATCTTGAATATGTACCCAAAGAACAACA
ACAGTGAGGGAATGATATGCAGATACTGTAAATGCATGTAAGTTTGCATG
GTTTTAATTTTGCTGTAGAGAGAAAATGGAGTTTTCGTGATGGTTTTATG
TTCGCAGACAATGGGGTAGGAGGACAAAAACATTTCGCAGTGGTTTTAAG
TTTGCAGCGAAGAGCCTACCGCAAAAACCAGGAACATAAAACCACTGCAA
AGATTTCTGCATTTACAGTACTTGTAACAGCCCATTCTCATTCCCCCAGT
GATCCCCATGGTCAGTATTGACCAAGAAACAATGACCGTCTCTCCCGGAG
AGGAGGTCAGACTGAGGTGCGAGGCGGAGGGGACGGAACCGATCATGTAC
GAGTGGACGCGCGTGGACGGCGACATGAGCACGCGGGCGACCACGAGCGG
GGGACTCCTGATCATCCAGCAGGTTACGACGGAGGACATGGGACAGTACA
GGTGTCTGATCACCAACCCTGCAGGGATAGCGGAGGGATTCACCAATATC
ATTGTCACAGGTGGGGAAATGGAAAATATTTATGTTTGGTTAAATGTAAA
TTCAATCAAGTTCAAGGTGATTTATTTTCACAGTAGAGAGAAAATGTAAG
TGTTCGCAGTGGTTTTTATAAGAGGTTATGGCGAAAACTGGGAACATTAA
ACCACTAACCACTTCATTATCAGTATTTGCAGACTATAATTCATGCATGT
AATGCTGGTAAACATGTTTCATTGTGCCTTGAGTTTTATTTTGAAAGGTT
TCATTTCAATGAATCAAGGATAATTGTTTGGGGGTTATGAGAAAATGGCT
GCAAAATTTTGCAAATATCAATTGTGCTGTTCTTTGAATGTCACTCTTAG
TTTTTTTATGTACGCAAGTTGTTTTTCTCTTAGAACCAAATCACCGTAAT
GTTAACAACATCTTGGTCATTGTTCCGTGTTGACTTGCAGCATCTTGCAT
TTATAGCTGATCTCCAAATTCTTAACAAAAAAACTCACAAATATTCTTCA
CAGCGAAACTCAGAATAAAGAAGCATGTTTTTTTCTCTCTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAACCAGGAACATAAAACCACTGCA
AAGATTTCTGCATTTACAGTACTTGTAACAGCCCATTCTCATTCCCCCAG
TGATCCCCATGGTCAGTATTGACCAAGAAACAATGACCGTCTCTCCCGGA
GAGGAGGTCAGACTGAGGTGCGAGGCGGAGGGGACGGAACCGATCATGTA
CGAGTGGACGCGCGTGGACGGCGACATGAGCACGCGGGCGACCACGAGCG
GGGGACTCCTGATCATCCAGCAGGTTACGACGGAGGACATGGGACAGTAC
AGGTGTCTGATCACCAACCCTGCAGGGATAGCGGAGGGATTCACCAATAT
CATTGTCACAGGTGGGGAAATGGAAAATATTTATGTTTGGTTAAATGTAA
ATTCAATCAAGTTCAAGGTGATTTATTTTCACAGTAGAGAGAAAATGTAA
GTGTTCGCAGTGGTTTTTATAAGAGGTTATGGCGAAAACTGGGAACATTA
AACCACTAACCACTTCATTATCAGTATTTGCAGACTATAATTCATGCATG
TAATGCTGGTAAACATGTTTCATTGTGCCTTGAGTTTTATTTTGAAAGGT
TTCATTTCAATGAATCAAGGATAATTGTTTGGGGGTTATGAGAAAATGGC
TGCAAAATTTTGCAAATATCAATTGTGCTGTTCTTTGAATGTCACTCTTA
GTTTTTTTATGTACGCAAGTTGTTTTTCTCTTAGAACCAAATCACCGTAA
TGTTAACAACATCTTGGTCATTGTTCCGTGTTGACTTGCAGCATCTTGCA
TTTATAGCTGATCTCCAAATTCTTAACAAAAAAACTCACAAATATTCTTC
ACAGCGAAACTCAGAATAAAGAAGCATGTTTTTTTCTCTCTTTCCTTGTT
TTAAATGTTCACAATATCTTGTTCATTATTCTTTGTTGACTTGCAGCATC
TTACATTCACAGCTAAACTTGAGACTTCAAAATCTTAACAAAAAACTCCC
ACAAATTTTCTTTACAGCGGAACCCACGATAAAGACGATTTCGCCTAAGG
AGTCGATGCGAGAGGCTGGGTCCACAGCTGAGTTTGGCTGTGCGGCGGCA
GGCTTCCCTGTCCCTAGTATCCAGTGGTTCAAGGAG Coding sequence (CDS) from alignment at Sc0000020:82695..87630+ >transcript:BL96323_cuf11 ID=transcript:BL96323_cuf11|Name=transcript:BL96323_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=4698bp|location=Sequence derived from alignment at Sc0000020:82695..87630+ (Branchiostoma lanceolatum)
ACCCAGAACAGTGCAGTGTTGGAGATTGACCGCGTGACCGTGGAAGATTC
AGGAGTCTACACCTGCGAGTCTAACAACAACATCGGCATCTCAGAGTCTT
CAGTTCAAGTCATAGTTTCTGAAGCAAGAGTAGGACCAGACGAGGTTCCG
GTGGTGACCATCACTCCTCCGTTCTCCACTGTTGTGGAGGGAGACCCTGC
TGAGTTCAAGTGCACGGCAACAGGTTCCCCACCCCCAAGGCTCCGATGGC
AGAAGATCGGAGGTGCCCAGCCCCCCAGGTACCAGGTGCAGCAGGGCACC
CTGACCATCCCCAGCGTACGCAGGGAAGACGAGGGAGAGTACTCCTGTAC
TGCTGTGAACTACGCAGGGGAGGCTAGTCTGGCTGCAAGGCTTGTAGTGC
AAGTGATCCCCATGGTCAGTATTGACCAAGAAACAATGACCGTCTCTCCC
GGAGAGGAGGTCAGACTGAGGTGCGAGGCGGAGGGGACGGAACCGATCAT
GTACGAGTGGACGCGCGTGGACGGCGACATGAGCACGCGGGCGACCACGA
GCGGGGGACTCCTGATCATCCAGCAGGTTACGACGGAGGACATGGGACAG
TACAGGTGTCTGATCACCAACCCTGCAGGGATAGCGGAGGGATTCACCAA
TATCATTGTCACAGCGGAACCCACGATAAAGACGATTTCGCCTAAGGAGT
CGATGCGAGAGGCTGGGTCCACAGCTGAGTTTGGCTGTGCGGCGGCAGGC
TTCCCTGTCCCTAGTATCCAGTGGTTCAAGGAGACCCAGAACAGTGCAGT
GTTGGAGATTGACCGCGTGACCGTGGAAGATTCAGGAGTCTACACCTGCG
AGTCTAACAACAACATCGGCATCTCAGAGTCTTCAGTTCAAGTCATAGTT
TCTGAAGCAAGAGTAGGACCAGACGAGGTTCCGGTGGTGACCATCACTCC
TCCGTTCTCCACTGTTGTGGAGGGAGACCCTGCTGAGTTCAAGTGCACGG
CAACAGGTTCCCCACCCCCAAGGCTCCGATGGCAGAAGATCGGAGGTGCC
CAGCCCCCCAGGTACCAGGTGCAGCAGGGCACCCTGACCATCCCCAGCGT
ACGCAGGGAAGACGAGGGAGAGTACTCCTGTACTGCTGTGAACTACGCAG
GGGAGGCTAGTCTGGCTGCAAGGCTTGTAGTGCAAGTGATCCCCATGGTC
AGTATTGACCAAGAAACAATGACCGTCTCTCCCGGAGAGGAGGTCAGACT
GAGGTGCGAGGCGGAGGGGACGGAACCGATCATGTACGAGTGGACGCGCG
TGGACGGCGACATGAGCACGCGGGCGACCACGAGCGGGGGACTCCTGATC
ATCCAGCAGGTTACGACGGAGGACATGGGACAGTACAGGTGTCTGATCAC
CAACCCTGCAGGGATAGCGGAGGGATTCACCAATATCATTGTCACAGCGG
AACCCACGATAAAGACGATTTCGCCTAAGGAGTCGATGCGAGAGGCTGGG
TCCACAGCTGAGTTTGGCTGTGCGGCGGCAGGCTTCCCTGTCCCTAGTAT
CCAGTGGTTCAAGGAGACCCAGAACAGTGCAGTGTTGGAGATTGACCGCG
TGACCGTGGAAGATTCAGGAGTCTACACCTGCGAGTCTAACAACAACATC
GGCATCTCAGAGTCTTCAGTTCAAGTCATAGTTTCTGAAGCAAGAGTAGG
ACCAGACGAGGTTCCGGTGGTGACCATCACTCCTCCGTTCTCCACTGTTG
TGGAGGGAGACCCTGCTGAGTTCAAGTGCACGGCAACAGGTTCCCCACCC
CCAAGGCTCCGATGGCAGAAGATCGGAGGTGCCCAGCCCCCCAGGTACCA
GGTGCAGCAGGGCACCCTGACCATCCCCAGCGTACGCAGGGAAGACGAGG
GAGAGTACTCCTGTACTGCTGTGAACTACGCAGGGGAGGCTAGTCTGGCT
GCAAGGCTTGTAGTGCAAGTGATCCCCATGGTCAGTATTGACCAAGAAAC
AATGACCGTCTCTCCCGGAGAGGAGGTCAGACTGAGGTGCGAGGCGGAGG
GGACGGAACCGATCATGTACGAGTGGACGCGCGTGGACGGCGACATGAGC
ACGCGGGCGACCACGAGCGGGGGACTCCTGATCATCCAGCAGGTTACGAC
GGAGGACATGGGACAGTACAGGTGTCTGATCACCAACCCTGCAGGGATAG
CGGAGGGATTCACCAATATCATTGTCACAGCGGAACCCACGATAAAGACG
ATTTCGCCTAAGGAGTCGATGCGAGAGGCTGGGTCCACAGCTGAGTTTGG
CTGTGCGGCGGCAGGCTTCCCTGTCCCTAGTATCCAGTGGTTCAAGGAGA
CCCAGAACAGTGCAGTGTTGGAGATTGACCGCGTGACCGTGGAAGATTCA
GGAGTCTACACCTGCGAGTCTAACAACAACATCGGCATCTCAGAGTCTTC
AGTTCAAGTCATAGTTTCTGAAGCAAGAGTAGGACCAGACGAGGTTCCGG
TGGTGACCATCACTCCTCCGTTCTCCACTGTTGTGGAGGGAGACCCTGCT
GAGTTCAAGTGCACGGCAACAGGTTCCCCACCCCCAAGGCTCCGATGGCA
GAAGATCGGAGGTGCCCAGCCCCCCAGGTACCAGGTGCAGCAGGGCACCC
TGACCATCCCCAGCGTACGCAGGGAAGACGAGGGAGAGTACTCCTGTACT
GCTGTGAACTACGCAGGGGAGGCTAGTCTGGCTGCAAGGCTTGTAGTGCA
AGTGATCCCCATGGTCAGTATTGACCAAGAAACAATGACCGTCTCTCCCG
GAGAGGAGGTCAGACTGAGGTGCGAGGCGGAGGGGACGGAACCGATCATG
TACGAGTGGACGCGCGTGGACGGCGACATGAGCACGCGGGCGACCACGAG
CGGGGGACTCCTGATCATCCAGCAGGTTACGACGGAGGACATGGGACAGT
ACAGGTGTCTGATCACCAACCCTGCAGGGATAGCGGAGGGATTCACCAAT
ATCATTGTCACAGCGGAACCCACGATAAAGACGATTTCGCCTAAGGAGTC
GATGCGAGAGGCTGGGTCCACAGCTGAGTTTGGCTGTGCGGCGGCAGGCT
TCCCTGTCCCTAGTATCCAGTGGTTCAAGGAGACCCAGAACAGTGCAGTG
TTGGAGATTGACCGCGTGACCGTGGAAGATTCAGGAGTCTACACCTGCGA
GTCTAACAACAACATCGGCATCTCAGAGTCTTCAGTTCAAGTCATAGTTT
CTGAAGCAAGAGTAGGACCAGACGAGGTTCCGGTGGTGACCATCACTCCT
CCGTTCTCCACTGTTGTGGAGGGAGACCCTGCTGAGTTCAAGTGCACGGC
AACAGGTTCCCCACCCCCAAGGCTCCGATGGCAGAAGATCGGAGGTGCCC
AGCCCCCCAGGTACCAGGTGCAGCAGGGCACCCTGACCATCCCCAGCGTA
CGCAGGGAAGACGAGGGAGAGTACTCCTGTACTGCTGTGAACTACGCAGG
GGAGGCTAGTCTGGCTGCAAGGCTTGTAGTGCAAGTGATCCCCATGGTCA
GTATTGACCAAGAAACAATGACCGTCTCTCCCGGAGAGGAGGTCAGACTG
AGGTGCGAGGCGGAGGGGACGGAACCGATCATGTACGAGTGGACGCGCGT
GGACGGCGACATGAGCACGCGGGCGACCACGAGCGGGGGACTCCTGATCA
TCCAGCAGGTTACGACGGAGGACATGGGACAGTACAGGTGTCTGATCACC
AACCCTGCAGGGATAGCGGAGGGATTCACCAATATCATTGTCACAGCGGA
ACCCACGATAAAGACGATTTCGCCTAAGGAGTCGATGCGAGAGGCTGGGT
CCACAGCTGAGTTTGGCTGTGCGGCGGCAGGCTTCCCTGTCCCTAGTATC
CAGTGGTTCAAGGAGACCCAGAACAGTGCAGTGTTGGAGATTGACCGCGT
GACCGTGGAAGATTCAGGAGTCTACACCTGCGAGTCTAACAACAACATCG
GCATCTCAGAGTCTTCAGTTCAAGTCATAGTTTCTGAAGCAAGAGTAGGA
CCAGACGAGGTTCCGGTGGTGACCATCACTCCTCCGTTCTCCACTGTTGT
GGAGGGAGACCCTGCTGAGTTCAAGTGCACGGCAACAGGTTCCCCACCCC
CAAGGCTCCGATGGCAGAAGATCGGAGGTGCCCAGCCCCCCAGGTACCAG
GTGCAGCAGGGCACCCTGACCATCCCCAGCGTACGCAGGGAAGACGAGGG
AGAGTACTCCTGTACTGCTGTGAACTACGCAGGGGAGGCTAGTCTGGCTG
CAAGGCTTGTAGTGCAAGTGATCCCCATGGTCAGTATTGACCAAGAAACA
ATGACCGTCTCTCCCGGAGAGGAGGTCAGACTGAGGTGCGAGGCGGAGGG
GACGGAACCGATCATGTACGAGTGGACGCGCGTGGACGGCGACATGAGCA
CGCGGGCGACCACGAGCGGGGGACTCCTGATCATCCAGCAGGTTACGACG
GAGGACATGGGACAGTACAGGTGTCTGATCACCAACCCTGCAGGGATAGC
GGAGGGATTCACCAATATCATTGTCACAGCGGAACCCACGATAAAGACGA
TTTCGCCTAAGGAGTCGATGCGAGAGGCTGGGTCCACAGCTGAGTTTGGC
TGTGCGGCGGCAGGCTTCCCTGTCCCTAGTATCCAGTGGTTCAAGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000020 | genome | Sc0000020:82695..87630 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96323_cuf11 |
| Biotype | protein_coding |
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