|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96322_cuf6 >transcript:BL96322_cuf6-protein ID=transcript:BL96322_cuf6-protein|Name=transcript:BL96322_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=185bp
APCDCNGHASTCDPETGACQGCRDNTIGEYCDQCAPGFFGDPSSGRPDAC
RPCPCPLPSVNNQFSPTCFLDTDSRPTCDACPPGYSGRDCGECSPGYNGN
PRVPGGRCTQVGVGPGPGPIGPGPGPGPVAPQQPSIQIYPQQATETAGRS
AQFRCDVSGAPPFQISWGRSDGRPLPQRYRLSNEN Run BLAST on NCBI mRNA from alignment at Sc0000020:65983..70255+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96322_cuf6 ID=transcript:BL96322_cuf6|Name=transcript:BL96322_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=4273bp|location=Sequence derived from alignment at Sc0000020:65983..70255+ (Branchiostoma lanceolatum)
GTGCACCTTGTGACTGTAACGGACATGCCTCGACATGTGACCCAGAGACA
GGTGCCTGTCAGGTGAGATCATAAACCTACATTGTATACATAACACACTC
AGGCTTATTGTCAGACATACTGTCAATGCATTTACTTTTGCAGTGGTTTT
ATTTTGCGTCAAGAGGGTTTGAAGTTCCTGGTGGAAACAGTTGATTTGAT
TTGATTTGATTTGATTTGATTTGATTTGACTGTGGAAAAGTACAGCCAGG
ACTACCCAACTAGCCGAAGGCTATTACAAAGGGTTATCCCTGGGAACAGT
ATTCAAAGATCAATACAAACTTTCACAAAGTGCGTCAAGCACACACATAG
AGGCGGACACTAAACACAAAGTAAAATTACATCTATTAGAAGAAACAAAA
TCAACAAAAACCATCACAAGACTTCTGTTGTATAGTAGGATTACGAGACA
CATATTTGCAATATTATGATTTTGCGTTTAGAGTTCTTCACCGAAACTTG
TTGATACCTTCAGCTTTATGCCCTGTAAGTAAAACATGTATTTCCTCCAG
AAATCACATGATACACACGAAAACATTACGAACTGATTTCCATGTGAGTT
ACAAATGTACCCCTTCATTCGCATCTCCAGGGCTGTAGAGACAACACCAT
TGGTGAATACTGTGACCAGTGTGCTCCTGGGTTCTTCGGTGACCCGTCCA
GCGGCAGGCCTGATGCCTGCAGACCCTGTCCCTGCCCGCTGCCATCTGTC
AACAACCAGTAAGTACATCATCATTTACGTGATGTTCTGTTGGTCTATGT
TTGTTTGTTTGTTTTATTCAGATCTCCATTTCCATACAATTTTAGGGCCG
GAAAATCGGATTTTGAAAGTTAATTTATTAAGTCATTATTTAGTCAGTTC
AAACTAGCCTGGGTGCGAGTGTAGGAGCCCCGGTAGAAATAGGATGGCAC
CCAGGCTAGTTCAAACAACACTATTATCACAATGCAAAGTGACGTCCATG
ATGCAAAAATATGACTTCGTTGTAATGTGAGAACTCACTGAAAATCGTCG
CCGGGGTTTTTGTAGGCTCAGGAAACTAAGGGGATAATTTTATGCCATGT
TTTTGCACAGTTTTAAAAGGCTAAAAGTCAAAGTATAAAGTTATTACACA
AATGTGCTGGATGTTAGTAAATGTTACTGTAACTGTAACAATGAAGATTT
CAGCATTTTTTTTATTTCCATTTTTTGGTCCCTAACATTGCTTTGGTTGC
CTTTAATGTTCAGCTTTCACAAATTCTTTACAGTAGTTTTCCTGGAGTCT
GCCCACATTGAATGCAATTAAATCAAAGACAAGATACAATTATTGTTAGA
CAGTACAATAAACAAAATCAAATGTGATGAACTTAAAAGCGAGCAGGAGA
GGTCAGAGGACAACTTGTTAATTTCATCGGTTACTAATAGGTGATAGAAA
AGTTATCTTTGGATTTGATTGATACTGTTTCCAAATGGATATGTTTTGTT
TAACGAACAACTGTATATTCCAGGTTCTCGCCCACCTGCTTCTTGGATAC
CGACAGCAGACCCACCTGTGATGCCTGCCCACCTGGGTACTCAGGACGGG
ACTGTGGAGAGTAAGTACATGTAACAATCCACCTTCGTCACGTCTTCCTA
CTGTTGTCAGTTGCAAAATTTCAAACTTTGATAAATCAAGATTGATACTA
ATGGCTAGCCTTATAATTAATTATTGTGTTTTATTTGCAAGTTCTTGCCC
GAGGGCTAATTTCAACATGAAACATTGCGTAGAAAGGGTATACTGTGCAG
ATAGTGGGAGTTAACAATATTGACAAGTAGAACAAATGGCTATTCTAAGA
ACTACTACGGAATACAATCTACGCTTTTTGGGTTTGACTTCTTTTTCGGA
AGCAGTGGAAGACGAAGTGTCCCACTTAACACAAATTTTCCCCCAATATT
TAGTGACATTTTTTTTGTATGGAGAAGAAATACATTTTTTCATTTTTTGT
CGTTGCCACCATTTCTTCAGGTGTTCACCTGGATACAACGGCAATCCCAG
AGTTCCTGGTGGCAGATGCACCCAAGTTGGAGTTGGCCCCGGACCTGGAC
CAAGTGAGTTGACTGTTGTACATGACTGATTATGATGTGTGTTCCAACAC
AGATTCTTACATGTGTTGTTCATTGTGACATTCAAATCAGTTGTGATTTC
TGCATACTTACATGTACTAGGTAGCAGTCATTAATTTTCATTCTGTATAA
ATCGTATGTTGTGTTATTAACATGGAAATTACATTTATTGATAATTCTGT
AGATTTCATGTCAAAACAGTTCAGTATAAGGTATTTGTTTACATTATCAG
GTCTTGATAGGTTAAACTTTGAAAAATGTGGTGTTAGGTTGATATTGATT
TTTGTACTGCAACATATATAAACAATACATGGTGGCAACACACTCAAATC
ATTGACTTACGCCACCACCAAAACAAAGTACAGTACGTAAATACAAAGCA
AATCAAAGCAAATTATACAAACCTAAGTTAAGAGTTATGAAATGAACAAG
TCCATTGAAACTGCTAGTGTGATGTTGAGAAATTACTGTAAATGCAGAAA
TGTTCATGGGGATTTAATTTTGTGGTAGGGAGAAAATGGAGTATTCGCGG
TAGTTTTGAGTTCGCGTTTGAAACAATAGTAGCGCTACAGTCACACAAAA
GAACGACCTTTCACATTTGTTTTAAGATGGCGGTAAAGAGTTCACCGCAA
AAACCACGAACATAAAACCACCGCGAACATTTCTGCATTTACAGTAGTTA
TGAAAGCATTTGGTATCTGTCAAAAATGTTTGGACATAAAGCAAGATTTG
AGAATTGTTTGATGTAGGCAGAAAAGAAAATCCACTTAAAATTAGATAGA
ATTAATGGTTACCGTATTGATTTGATGGAACTTAAGTCCTACAATGTACC
TACAAATGTATAAGACCTGGGTGTAGACAAGAAGAAACAGTGTACTCTGT
GGGGACCTCCCCCCCCCACTCTGTACACTTGTCTTGTGGCCCCCCTGGTT
AACGATGTCTCCCTCTGTGTGTGTGTAACAAAAACAGACCGTTATCCCAC
ATACGGAAACGTGCCTGAAAGGATGACGGACGAGGGTAAGGAGTTGTGGG
AGTAGCCACGGTAGCTTTTAGCCCTACTGCATATTTCCTGCCCCTTATCC
CTGGCTGTTTATGTTCATACACTACATGTACGGACCCTCCTAAAAGCAGG
ACCCCTGTCGCTTGATTCGTTGGCTTGCTTGAGTAGGGGCCCTGCTCTGT
AGCCCCAGTAGAAACGGCTCTTGCAACGTTACTGACAGTTGCTCATGAAT
AATTAATGAGCTATTCTTATTTGGCACAATTTGGCAGTTAATTTGTTCTG
AACCTAAAGTAACAATGTGAGACGTAACCTGATTGGTTGATAGCTTCCCA
GCGTCCTTTGCTCTAGATGAGGTTTAGCAAACCCTCTGATTGGCTGAAGC
TGTTTTGGTGGCAACGTCTCCAGAACCGTGTCTATTGGGGCTAAAGAGCA
GGGCCACTACGCGAGCGAGCCAATAAATCGAGCGATAGGGGTCCTGCTTT
TAGGAGGGTGCATGTACGTTGTATATTGGCAAGTGCAAGCTAGATGTTCT
GTAGATTGACTGCAACATGCTAGCTGTTATATTCATGTTTGAGCTGACTG
AACGCTAGAATGTCAAATAGAATATCCGAAAATGTAGTGTAGTCCTAATC
TGCACGAGAATGGAAGGCAGCGACAAAGAATAACTGTGCAGTGCTAAATG
TGAAAACTGAGAAAGGTAGATTTTGGAGCAGTTGTAACAAGGAAATATCA
ACCTCAAAGCATGATTAGAATCCTGCTGTCTGCTTTGAAAATATCACTGC
ATTTTGCAAAGAGGGAAATGTTTTTGGTGTCTCTCCTAAAAATTGTCAGT
CTTAGTTTTTAAAAATTATAGTTAGATATAGACAGTTTAGAGCTTTGCAT
GAACCTTTAAGATGATAAAGTGGTGTAGGAATTATTATGAATGATTTTAA
AATTGATGTTTGTTTTTATAATCTAGTTGGCCCTGGTCCAGGCCCTGGCC
CAGTTGCCCCTCAGCAGCCTTCCATCCAGATCTACCCACAACAAGCCACC
GAAACCGCAGGACGCTCCGCACAGTTCCGCTGTGACGTGTCCGGCGCCCC
GCCGTTCCAGATCAGCTGGGGACGCAGCGATGGCCGCCCCCTCCCACAAC
GTTACAGGCTGTCCAATGAGAAC Coding sequence (CDS) from alignment at Sc0000020:65983..70255+ >transcript:BL96322_cuf6 ID=transcript:BL96322_cuf6|Name=transcript:BL96322_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=2775bp|location=Sequence derived from alignment at Sc0000020:65983..70255+ (Branchiostoma lanceolatum)
GCACCTTGTGACTGTAACGGACATGCCTCGACATGTGACCCAGAGACAGG
TGCCTGTCAGGGCTGTAGAGACAACACCATTGGTGAATACTGTGACCAGT
GTGCTCCTGGGTTCTTCGGTGACCCGTCCAGCGGCAGGCCTGATGCCTGC
AGACCCTGTCCCTGCCCGCTGCCATCTGTCAACAACCAGTTCTCGCCCAC
CTGCTTCTTGGATACCGACAGCAGACCCACCTGTGATGCCTGCCCACCTG
GGTACTCAGGACGGGACTGTGGAGAGTGTTCACCTGGATACAACGGCAAT
CCCAGAGTTCCTGGTGGCAGATGCACCCAAGTTGGAGTTGGCCCCGGACC
TGGACCAATTGGCCCTGGTCCAGGCCCTGGCCCAGTTGCCCCTCAGCAGC
CTTCCATCCAGATCTACCCACAACAAGCCACCGAAACCGCAGGACGCTCC
GCACAGTTCCGCTGTGACGTGTCCGGCGCCCCGCCGTTCCAGATCAGCTG
GGGACGCAGCGATGGCCGCCCCCTCCCACAACGTTACAGGCTGTCCAATG
AGAACGCACCTTGTGACTGTAACGGACATGCCTCGACATGTGACCCAGAG
ACAGGTGCCTGTCAGGGCTGTAGAGACAACACCATTGGTGAATACTGTGA
CCAGTGTGCTCCTGGGTTCTTCGGTGACCCGTCCAGCGGCAGGCCTGATG
CCTGCAGACCCTGTCCCTGCCCGCTGCCATCTGTCAACAACCAGTTCTCG
CCCACCTGCTTCTTGGATACCGACAGCAGACCCACCTGTGATGCCTGCCC
ACCTGGGTACTCAGGACGGGACTGTGGAGAGTGTTCACCTGGATACAACG
GCAATCCCAGAGTTCCTGGTGGCAGATGCACCCAAGTTGGAGTTGGCCCC
GGACCTGGACCAATTGGCCCTGGTCCAGGCCCTGGCCCAGTTGCCCCTCA
GCAGCCTTCCATCCAGATCTACCCACAACAAGCCACCGAAACCGCAGGAC
GCTCCGCACAGTTCCGCTGTGACGTGTCCGGCGCCCCGCCGTTCCAGATC
AGCTGGGGACGCAGCGATGGCCGCCCCCTCCCACAACGTTACAGGCTGTC
CAATGAGAACGCACCTTGTGACTGTAACGGACATGCCTCGACATGTGACC
CAGAGACAGGTGCCTGTCAGGGCTGTAGAGACAACACCATTGGTGAATAC
TGTGACCAGTGTGCTCCTGGGTTCTTCGGTGACCCGTCCAGCGGCAGGCC
TGATGCCTGCAGACCCTGTCCCTGCCCGCTGCCATCTGTCAACAACCAGT
TCTCGCCCACCTGCTTCTTGGATACCGACAGCAGACCCACCTGTGATGCC
TGCCCACCTGGGTACTCAGGACGGGACTGTGGAGAGTGTTCACCTGGATA
CAACGGCAATCCCAGAGTTCCTGGTGGCAGATGCACCCAAGTTGGAGTTG
GCCCCGGACCTGGACCAATTGGCCCTGGTCCAGGCCCTGGCCCAGTTGCC
CCTCAGCAGCCTTCCATCCAGATCTACCCACAACAAGCCACCGAAACCGC
AGGACGCTCCGCACAGTTCCGCTGTGACGTGTCCGGCGCCCCGCCGTTCC
AGATCAGCTGGGGACGCAGCGATGGCCGCCCCCTCCCACAACGTTACAGG
CTGTCCAATGAGAACGCACCTTGTGACTGTAACGGACATGCCTCGACATG
TGACCCAGAGACAGGTGCCTGTCAGGGCTGTAGAGACAACACCATTGGTG
AATACTGTGACCAGTGTGCTCCTGGGTTCTTCGGTGACCCGTCCAGCGGC
AGGCCTGATGCCTGCAGACCCTGTCCCTGCCCGCTGCCATCTGTCAACAA
CCAGTTCTCGCCCACCTGCTTCTTGGATACCGACAGCAGACCCACCTGTG
ATGCCTGCCCACCTGGGTACTCAGGACGGGACTGTGGAGAGTGTTCACCT
GGATACAACGGCAATCCCAGAGTTCCTGGTGGCAGATGCACCCAAGTTGG
AGTTGGCCCCGGACCTGGACCAATTGGCCCTGGTCCAGGCCCTGGCCCAG
TTGCCCCTCAGCAGCCTTCCATCCAGATCTACCCACAACAAGCCACCGAA
ACCGCAGGACGCTCCGCACAGTTCCGCTGTGACGTGTCCGGCGCCCCGCC
GTTCCAGATCAGCTGGGGACGCAGCGATGGCCGCCCCCTCCCACAACGTT
ACAGGCTGTCCAATGAGAACGCACCTTGTGACTGTAACGGACATGCCTCG
ACATGTGACCCAGAGACAGGTGCCTGTCAGGGCTGTAGAGACAACACCAT
TGGTGAATACTGTGACCAGTGTGCTCCTGGGTTCTTCGGTGACCCGTCCA
GCGGCAGGCCTGATGCCTGCAGACCCTGTCCCTGCCCGCTGCCATCTGTC
AACAACCAGTTCTCGCCCACCTGCTTCTTGGATACCGACAGCAGACCCAC
CTGTGATGCCTGCCCACCTGGGTACTCAGGACGGGACTGTGGAGAGTGTT
CACCTGGATACAACGGCAATCCCAGAGTTCCTGGTGGCAGATGCACCCAA
GTTGGAGTTGGCCCCGGACCTGGACCAATTGGCCCTGGTCCAGGCCCTGG
CCCAGTTGCCCCTCAGCAGCCTTCCATCCAGATCTACCCACAACAAGCCA
CCGAAACCGCAGGACGCTCCGCACAGTTCCGCTGTGACGTGTCCGGCGCC
CCGCCGTTCCAGATCAGCTGGGGACGCAGCGATGGCCGCCCCCTCCCACA
ACGTTACAGGCTGTCCAATGAGAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000020 | genome | Sc0000020:65983..70255 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96322_cuf6 |
| Biotype | protein_coding |
|
