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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96320_cuf4 >transcript:BL96320_cuf4-protein ID=transcript:BL96320_cuf4-protein|Name=transcript:BL96320_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=185bp
EDIILIGGGAILTYRQYNEPVNEREETIEVELRESLWTSSALSASLSRED
FMMILQSVEAILIKASYNSFMVTTSIQGIEMDTAVEENTGQSRAVMVEQC
SCPAGYTGLSCERCETGYIRQNGGRFLGSCVPVGGSGACNCNGHSTDCDQ
LTGECRNCQHNTDGPNCEQCKAGYYGDPLSGFPDA Run BLAST on NCBI mRNA from alignment at Sc0000020:44278..47126+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96320_cuf4 ID=transcript:BL96320_cuf4|Name=transcript:BL96320_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2849bp|location=Sequence derived from alignment at Sc0000020:44278..47126+ (Branchiostoma lanceolatum)
AGAAGACATCATCCTTATTGTGAGTATATTATATAATATATACATATAAA
CCATACATTTGCCATATTGCTGCATACAATTTTGAAAGGACTAAGGTCTA
ATGCATGTATATTTTTCACAGAAACTATACCATTGTGTAGAAACATCTTG
TTTGTGATATGATAAGATTTTTTCCGACATAAATGAAAATTGTTTTTGAT
TTGAAACAGGGAGGAGGAGCCATCCTGACCTACAGACAATACAACGAACC
AGTCAATGAGAGGGAAGAAACTATTGAGGTTGAGCTCAGAGAGGTAAGAA
GAAATTTTGACCCACGAGAATTAAGAAAATAAGCCAACTTTTACACATTG
TCATTAACCATCTTGCTGGTAGCCTTTTGGAACCAAATTTTCCATAATTA
CGAGGTAAAGTAGCAGGAAGAAGGTTAATCATGAAAGCATGTAGATAATT
GACAAGTGTTCCTTACATTTGTAGAGCCTATGGACATCGTCGGCCCTGTC
AGCCAGCCTGTCTCGTGAAGACTTCATGATGATCCTACAGAGTGTGGAGG
CCATCCTCATCAAGGCTTCATACAACTCATTCATGGTCACAACAAGGTAC
GGATGCTCGGATTTGTTTGTATTGCATACCCGGTATACTGCTGCATGGTG
TAAAGCCCCTGTCACGCGTGTGTGTATTTACAAGTCCGCATGAGTTGTGT
ATTAGCATGTTTTTGGTTTAGGTCAAGTTTGTAGCCGAATAAGTGACTTC
TTAGGTTCGATCACTAGGCTGCACAACAGTGGGTCAAAGTAGCTAACATC
TTTTTCTCCGCAAACCTTACTTAAACCAAAAAAATGTTGATGCGCAACTC
ATGCGCACTTGAATATACGCACAAGTGTGACAGGGCCCTAACACACCAGG
TTTGTACTGAAGAGTACAAGCTGCATATCTGGACAGATATATTTGATCCA
CACACACTGGGAAGGACCCCTACTCTTTTCAATAAGCATGGTGGGTTCTT
TTACTTGCTCAAGTTGTGGCTCTCCTCAAACGTGGGACCTCCATGTAACG
TCCTATCCGAGGGACGTCCCTAACCAAAGCTGGGTACTCATTTCCACCTG
AGTGAAGTGGGGAAAGTCATGTTAAGTGCCTTTTCCAAGGGCACAACATC
AACAAGACAAATGAGGGGGCCCCTAATTTGAACTTGGGTTCTGGGCCACT
GCGTCAGAGATACGGCATGACTAGTCTGCTCTTCAATTTGCAGGATATCA
ACCTAATTAACCTGGAGTTAGTAGGACAGTCATTTATGCAAAAAGATATA
ACCAAAAAATATACTATTAGATCTTAAAGTAGAAAAATATTTCAAAGTGT
TCATATCAATGTATGAAAATTTCAAGCCATCATGTTACAATTATGAAAGA
AAGCAACTCCTTCATCCATGGTCACAACAAAAAATGGATGCTTAGATTTA
GTACGCTTTCCAGGATATCAACCTAGCTACATTTTGTATAGAGCTGAATT
ATAAAGTACATTGATTTTGACTCAGAGTTAGTGGGAGAGTCATTCATGAA
AAAAATGTAACCGAAAATACCAAAATAGTTATACCTTGAAGTTCATGAAA
AAAATGTAACCAAAAAATATCAAAATAGTAAAATTTGTCAAAGTGTTCCT
ATCTTTATGTGCAAATTTCAAGGCATTATGTTACAATTATCAAAAGAATG
ATGATCAAAAGAAAGCACCTTAACATGTATATTATATATTATGCATCTCT
GCAGCATCCAGGGAATTGAGATGGACACAGCTGTGGAAGAGAACACGGGA
CAGTCACGTGCTGTCATGGTGGAACAGTGCAGCTGTCCTGCTGGGTACAC
TGGGCTGTCCTGCGAGGTGAGAGGGTTTTATTTTATTTTATTAGAAGTTA
TAAAAAACTTGAGTGCAGTGCCACATTGTCCTTGTCTCACAGTAAAAGAA
AAGAATATTATGCACAAAGTGTGATTCTATTGAAATTATCTGTTGGTATG
TGAACTTGAAAAGTTTGTACAAATGTAAACCCACGTTTTCAGCTGTCCTT
ATAATACAATGTATCTTCTTGTGCCCCCCAGCGTTGCGAGACTGGCTACA
TCCGACAGAACGGCGGGCGTTTCCTGGGCTCCTGCGTGCCTGTGGGCGGG
TCTGGTGCCTGTAACTGTAACGGACACTCAACTGACTGTGACCAACTTAC
AGGAGAATGCAGGGTATGTTTTACAACTACTTCTTTTCACATAATTTAGA
CATTTTGTAATACTGTAATACACTTTATCTTCACAGTAGCAAAATTTCAC
AGTGTAAAGAAAATGGACATTTTCACTGAACTTTAACTTCATGGTGGCGG
CAAGTGATTTACAGAACGGATGTGTGAAGGAATCATAAATAATAACTATA
GGTTTTTCACGGTGATGATAAGATCACGGTACAGAGGTAACTGTGAACAG
TGAACATAAATTTACAGGGAAAGAACAAGAATTACAGTACTGGTCAACAC
TATACAAAAGCTAGGCTAAGGCATGCTAAAGGTTTAGGCATTGCCGTATT
AGCATTTATTCTACAATTATTTTAACTTCGTTTTCTGCTGTCATTATGCA
ACCTTAAAGATGTTTTATTAGACATTACTACAAGAAAACATTTTCTACAT
GTATAAATGTACATTTGATTGAAGTATTACACATCGACTCGACTGGTAAT
CATTCTATTGTCTTGGATATTGTTTTACTATCTGATTGATTTATGATGTC
TCTGTCCTACAGAATTGTCAGCACAACACAGACGGACCCAACTGCGAACA
GTGCAAGGCTGGTTACTATGGCGACCCGCTAAGCGGCTTCCCCGATGCC Coding sequence (CDS) from alignment at Sc0000020:44278..47126+ >transcript:BL96320_cuf4 ID=transcript:BL96320_cuf4|Name=transcript:BL96320_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3330bp|location=Sequence derived from alignment at Sc0000020:44278..47126+ (Branchiostoma lanceolatum)
GAAGACATCATCCTTATTGGAGGAGGAGCCATCCTGACCTACAGACAATA
CAACGAACCAGTCAATGAGAGGGAAGAAACTATTGAGGTTGAGCTCAGAG
AGAGCCTATGGACATCGTCGGCCCTGTCAGCCAGCCTGTCTCGTGAAGAC
TTCATGATGATCCTACAGAGTGTGGAGGCCATCCTCATCAAGGCTTCATA
CAACTCATTCATGGTCACAACAAGCATCCAGGGAATTGAGATGGACACAG
CTGTGGAAGAGAACACGGGACAGTCACGTGCTGTCATGGTGGAACAGTGC
AGCTGTCCTGCTGGGTACACTGGGCTGTCCTGCGAGCGTTGCGAGACTGG
CTACATCCGACAGAACGGCGGGCGTTTCCTGGGCTCCTGCGTGCCTGTGG
GCGGGTCTGGTGCCTGTAACTGTAACGGACACTCAACTGACTGTGACCAA
CTTACAGGAGAATGCAGGAATTGTCAGCACAACACAGACGGACCCAACTG
CGAACAGTGCAAGGCTGGTTACTATGGCGACCCGCTAAGCGGCTTCCCCG
ATGCCGAAGACATCATCCTTATTGGAGGAGGAGCCATCCTGACCTACAGA
CAATACAACGAACCAGTCAATGAGAGGGAAGAAACTATTGAGGTTGAGCT
CAGAGAGAGCCTATGGACATCGTCGGCCCTGTCAGCCAGCCTGTCTCGTG
AAGACTTCATGATGATCCTACAGAGTGTGGAGGCCATCCTCATCAAGGCT
TCATACAACTCATTCATGGTCACAACAAGCATCCAGGGAATTGAGATGGA
CACAGCTGTGGAAGAGAACACGGGACAGTCACGTGCTGTCATGGTGGAAC
AGTGCAGCTGTCCTGCTGGGTACACTGGGCTGTCCTGCGAGCGTTGCGAG
ACTGGCTACATCCGACAGAACGGCGGGCGTTTCCTGGGCTCCTGCGTGCC
TGTGGGCGGGTCTGGTGCCTGTAACTGTAACGGACACTCAACTGACTGTG
ACCAACTTACAGGAGAATGCAGGAATTGTCAGCACAACACAGACGGACCC
AACTGCGAACAGTGCAAGGCTGGTTACTATGGCGACCCGCTAAGCGGCTT
CCCCGATGCCGAAGACATCATCCTTATTGGAGGAGGAGCCATCCTGACCT
ACAGACAATACAACGAACCAGTCAATGAGAGGGAAGAAACTATTGAGGTT
GAGCTCAGAGAGAGCCTATGGACATCGTCGGCCCTGTCAGCCAGCCTGTC
TCGTGAAGACTTCATGATGATCCTACAGAGTGTGGAGGCCATCCTCATCA
AGGCTTCATACAACTCATTCATGGTCACAACAAGCATCCAGGGAATTGAG
ATGGACACAGCTGTGGAAGAGAACACGGGACAGTCACGTGCTGTCATGGT
GGAACAGTGCAGCTGTCCTGCTGGGTACACTGGGCTGTCCTGCGAGCGTT
GCGAGACTGGCTACATCCGACAGAACGGCGGGCGTTTCCTGGGCTCCTGC
GTGCCTGTGGGCGGGTCTGGTGCCTGTAACTGTAACGGACACTCAACTGA
CTGTGACCAACTTACAGGAGAATGCAGGAATTGTCAGCACAACACAGACG
GACCCAACTGCGAACAGTGCAAGGCTGGTTACTATGGCGACCCGCTAAGC
GGCTTCCCCGATGCCGAAGACATCATCCTTATTGGAGGAGGAGCCATCCT
GACCTACAGACAATACAACGAACCAGTCAATGAGAGGGAAGAAACTATTG
AGGTTGAGCTCAGAGAGAGCCTATGGACATCGTCGGCCCTGTCAGCCAGC
CTGTCTCGTGAAGACTTCATGATGATCCTACAGAGTGTGGAGGCCATCCT
CATCAAGGCTTCATACAACTCATTCATGGTCACAACAAGCATCCAGGGAA
TTGAGATGGACACAGCTGTGGAAGAGAACACGGGACAGTCACGTGCTGTC
ATGGTGGAACAGTGCAGCTGTCCTGCTGGGTACACTGGGCTGTCCTGCGA
GCGTTGCGAGACTGGCTACATCCGACAGAACGGCGGGCGTTTCCTGGGCT
CCTGCGTGCCTGTGGGCGGGTCTGGTGCCTGTAACTGTAACGGACACTCA
ACTGACTGTGACCAACTTACAGGAGAATGCAGGAATTGTCAGCACAACAC
AGACGGACCCAACTGCGAACAGTGCAAGGCTGGTTACTATGGCGACCCGC
TAAGCGGCTTCCCCGATGCCGAAGACATCATCCTTATTGGAGGAGGAGCC
ATCCTGACCTACAGACAATACAACGAACCAGTCAATGAGAGGGAAGAAAC
TATTGAGGTTGAGCTCAGAGAGAGCCTATGGACATCGTCGGCCCTGTCAG
CCAGCCTGTCTCGTGAAGACTTCATGATGATCCTACAGAGTGTGGAGGCC
ATCCTCATCAAGGCTTCATACAACTCATTCATGGTCACAACAAGCATCCA
GGGAATTGAGATGGACACAGCTGTGGAAGAGAACACGGGACAGTCACGTG
CTGTCATGGTGGAACAGTGCAGCTGTCCTGCTGGGTACACTGGGCTGTCC
TGCGAGCGTTGCGAGACTGGCTACATCCGACAGAACGGCGGGCGTTTCCT
GGGCTCCTGCGTGCCTGTGGGCGGGTCTGGTGCCTGTAACTGTAACGGAC
ACTCAACTGACTGTGACCAACTTACAGGAGAATGCAGGAATTGTCAGCAC
AACACAGACGGACCCAACTGCGAACAGTGCAAGGCTGGTTACTATGGCGA
CCCGCTAAGCGGCTTCCCCGATGCCGAAGACATCATCCTTATTGGAGGAG
GAGCCATCCTGACCTACAGACAATACAACGAACCAGTCAATGAGAGGGAA
GAAACTATTGAGGTTGAGCTCAGAGAGAGCCTATGGACATCGTCGGCCCT
GTCAGCCAGCCTGTCTCGTGAAGACTTCATGATGATCCTACAGAGTGTGG
AGGCCATCCTCATCAAGGCTTCATACAACTCATTCATGGTCACAACAAGC
ATCCAGGGAATTGAGATGGACACAGCTGTGGAAGAGAACACGGGACAGTC
ACGTGCTGTCATGGTGGAACAGTGCAGCTGTCCTGCTGGGTACACTGGGC
TGTCCTGCGAGCGTTGCGAGACTGGCTACATCCGACAGAACGGCGGGCGT
TTCCTGGGCTCCTGCGTGCCTGTGGGCGGGTCTGGTGCCTGTAACTGTAA
CGGACACTCAACTGACTGTGACCAACTTACAGGAGAATGCAGGAATTGTC
AGCACAACACAGACGGACCCAACTGCGAACAGTGCAAGGCTGGTTACTAT
GGCGACCCGCTAAGCGGCTTCCCCGATGCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000020 | genome | Sc0000020:44278..47126 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96320_cuf4 |
| Biotype | protein_coding |
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