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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96283_cuf6 >transcript:BL96283_cuf6-protein ID=transcript:BL96283_cuf6-protein|Name=transcript:BL96283_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=386bp
FLIIMNISFTIISESFAEVHKDLYNQENDYEIVDFLLSGLKKGFRLIKSM
VVAIDEDEDRVPVYIDFEPECIVERSNQLFHSIIRLYVREGFEDEDTKVV
LQEMSDSGISVDDLALSVMREHHNHGGSRKVHVYREDIDVEWCPELNSDG
ERVFVSQPCDSEWTLRETCSTTKRAAGRSGKRDSCGFSRSKIPKSVTFDD
VFTANASPPHHGRSQKPPTVNRQMGRDSWYIPGPGSPDNIDVVHSNSYQA
TAGLTSTAVSRSGTTVALTTASTTGKKKPAGFPAAAVYVEPDEISLDDQI
LSDNDKEVENGFDFPTDERDLLTPAVYVAPSHDDGWQDMYDQLTDDCSGT
VEELEVVPASEMGYVMDEHGGGTPDMWYSVQGEEDC Run BLAST on NCBI mRNA from alignment at Sc0000036:1838391..1843533+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96283_cuf6 ID=transcript:BL96283_cuf6|Name=transcript:BL96283_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=5143bp|location=Sequence derived from alignment at Sc0000036:1838391..1843533+ (Branchiostoma lanceolatum)
TTCCTCATCATCATGAACATCTCCTTCACCATCATCAGCGAAAGCTTCGC
CGAGGTGATTTTCTAGATAAAACGACATATTTGATATATGCACTTGGCAC
AAAAAGTTCACAAACTTGAATTTGATCAAATGCTCGGACCCGCCATGTTT
ATTGTGTTCATGATTGTCGTGTTCCTCATCATCATGAATATCTCCTTCAC
TATCATCAGCGGAAAGCTTCGCCGAGGTGACATTCTGAAAGAACGACATA
TTTGAAACTTGAATTTGATCAAACATGTCTTCGTTGTTACTTTATCAACT
GTATAGAATTATGTATCGATAAAAGCCTGTTTAGCACCGTTCACAATTAT
ACCAAATTTGTTATGATCTGACATATACAAGTCGAACTATGCGAGTTGAC
TATGCGAGTGAGTCACAAAACAAAATTGTATCATGTTTAGTATACCTTAT
ATGTTGATATAGGTTAGACATCCAGTTAGTAAAATACGCCAAATATAGTA
ACTCAAGCAACTGGATATATTTTTAAACAGTCAGACGTGTCAGACAGCAT
CCGCTGTCTATCGTCAGTGACTAAGGATAGGACTGGAAAACCAGGTTTTA
TACCAAAACTCTGAATAGATATGTTAATGAGGTTGAGACAATTTAGGATG
TCTTGACATAGTCTTCAAAAGAATCAATACAAGGTTGTATGCTAATAGCT
CGAGTAGCTACTGTTGTTTTAGTACAGTAACTAAATGTTGTTCGTCCGGG
GGTGGGGGATCGAGGGTAGTGCATTATCCCAAGTACCTGAGAGTTCAACG
CGTAGACCCCCTTTCCTGTTGAGGGTGGGATTGTACATCCTCTTATATAT
TGCTTTAGTACACCTGATTTGTCTACACACTATCGATAGCGAAAAAAAAA
CGGAAAAAGTACATGTAAGCATAGGAAGCAATTATCATTTGGGACATATG
CAGTTAGTTGAAATTATATACGTCAGTGTTCATTTTGAATATTATTTGCA
TTATACAATACAGTATAGGTCTACTCTATTGAAGATTTTGTCATAGATAT
AGAAGCCAATTAGAATGTACTATTTCGTAACAATTGAGAGGGGGAACGTT
TGTCAGGTGTCCAATTTCAATTTGCAACTTTTTACATCTCTTAATTCTGA
TATAGAACTGATTTTGTTTACCCCAATCAAGGTTCACAAGGACTTATACA
ACCAGGAAAACGACTATGAAATTGTGGACTTTCTGCTCAGCGGTCTGAAG
AAAGGGTTCCGGCTGATAAAAAGCATGGTTGTGGCAATAGACGAGGATGA
GGACAGAGGTAGGTACAGAACACCTTCATGTGTTGTATTATTATTATTAT
TATTATTATTATTTGTTTTTTATTGTATTCAAACAATATTACAGTACATG
TACTAGGAATACAAAGGAATACATAAGATGTAGAAGATGTATAGACAAAA
AACTAAATAATATTCCAGACAAGTTTACAAACGTGTTTTCCTGATTAAAA
AAAATGATTGTGTAGATTTCCCCATCAAGTTTTCAAAATGTCTTTTTTAA
CCTTTTGACATATTTGTGCTATAAGGAATTCCAACTTACAACAAGTTCTA
ACAAAATCAACAAATCCTTTTAAAGAAACTACTTTGAAGTCTCTACTTTG
AAATATATACATTTTTGCAAGTCGTATAAGTCTATGATTATTGCATCCTC
CTACGCAGAGCCTCATCCGAGTTTTACACAATATACTTTGATGTCGCCCT
GCTAAACCGGGCTGAGGTTTCCACTTTTGTAGGCGTGGCCTCTAAACAGC
TGTCAGCCAATCAGAGAATCGCCTACTTGTTTTCTTTAGGTAAAGCCAAT
TCTCTGATTGGTCGACTGCTGGTTAGAGGTCACCCCCACAAAATTGGAAA
CCTCAGCCCGATTTAGCCGAGCCTCCCCAGCGTACAGTATAGCGGCCATG
TATGAGAATGATTGGTGCAGCGTATGACTGTACTTATGAAAATAGATTCA
TGCTAGATTCATCCATTCAGAACTGCTAGTCATTACGCTGTGTCCAATTA
TGTGCTTTTGAATTAATCGTATCTAAGACCATTATAATCATTCTGTAAAT
TAGCTGATTTTAGCTGATTTAACGGTCACTAGTCAACAACTAAAACTTCA
TAAACGCTGATATTTGAGCACTAATATTTGAGTCAGTAATGTTTGTTCCC
ACCGTTAAAATTAAGTACCGTGACCTACTCCATTTTCCCCCAACCGCTAT
ATTTTCATGCCGCTATATTAATTTACAGTGATTTACAGTATGATAATTTG
TGATTGGTACCATACATTCAAATACCCTCGGCGATCGTTGTGATATCATA
CCTACTCTATAAGCAAGAATTAAAACTGCAACAAAGAAGCATTACAAAGT
AACGCTCGAGCCTTGTTCTAAAGATGAATTATGTTTTATGAGATTGATAT
GCTTTTGCACTTATCTTGCAGTTCCTGTTTACATCGACTTCGAGCCGGAG
TGCATCGTGGAGCGGTCCAACCAGCTGTTCCACTCCATCATCCGGCTGTA
CGTCAGGGAAGGGTTCGAGGATGAAGACACAAAAGTCGTCTTGCAGGAAA
TGAGGTAGGTCATCCTCGCACAGGACGCGGCACGCTGGCGGCGTCGCTGC
GGCCGACTGAACTGACGAAGCACTCAACGAATTTCATCAACAAAAAACAG
TTCTTTTTAAGTTGTCTTTTTGGTCACACTTGTACGTTTTGAATGACATT
CCCATTATAAAGTCAAGGGTAACACAAATATCCAGTGTAGGACGCAGCGA
CGCCGCCAGCGTGCCGCCGGTCCAGTGAGAGGGGGGCTGTAGTTCTGCTT
CACTTGGTTTGGGAGGAAGAAGGATTACAGTTTTAGTGATTTCTTTTACA
GCTATAATCTATTTGCGGGCAGAAATGAGCATGAGACGCTATGCCCCATG
TGGGGCCCTGTCCAATATTTTGTAGATGTAGATGTAGATGTAGATGTAGA
TGTAGATGTAGATGAGACGGCAAAAAGACTTTTGAGATACACAAAAAGAA
AAAGAAGCAGTCATCCTCATTTGAGGTGAAGCATAATGCTTTTTGAGGTA
CACAAGATCTGCTTTAATTTACAGACGTCAATGTACGTTACATACGTACA
TGTATACAGCATATCGCTAACTAGCTATAGTTTCACCGTGTTACAATATG
CATTAAGTGCTATACAAATCCTTGAAGATGAGCTTCTAACGATAGCAATG
CCTTTTCTATTGCTACGTCAGATGTGCAAAGTTAATCCGATGTGCAGAGG
TTAGGTATGACAGGTCGTTCAGTGTAATATATGGCCGCGTGCCTGTGCAG
CTGGTGTGTTACGCCGAAGGGTTGTTATGACGGCTATACAGATACAGATA
CACATACTTGTTTGTGTTTACAGTGATTCAGGCATCTCCGTCGATGACTT
GGCTCTATCCGTGATGCGGGAACATCATAACCATGGGGGATCCAGGAAGG
TCCATGTCTACCGAGAAGACATCGATGTAGAGTGGTGTCCGGAACTGAAC
TCAGATGGGGAGCGTGTCTTCGTCAGCCAACCCTGCGATAGCGAATGGAC
TCTGAGGGAAACTTGCAGCACGACAAAGAGGGCAGCTGGCAGATCTGGCA
AGAGAGATTCCTGTGGCTTCTCCAGGTCTAAAATTCCCAAAAGCGTCACA
TTTGATGACGTTTTTACAGCCAATGCATCGCCACCACATCATGGCCGGAG
TCAGAAACCACCAACCGTAAATCGTCAGATGGGTAGAGACTCGTGGTACA
TCCCCGGACCCGGCTCTCCTGACAACATTGACGTTGTCCACAGCAACAGT
TACCAGGCAACGGCGGGTCTGACTTCTACAGCTGTTTCCCGCAGTGGTAC
AACTGTAGCCCTGACCACAGCCTCTACTACAGGAAAGAAGAAACCCGCTG
GGTTTCCAGCCGCAGCTGTTTACGTTGAACCTGACGAGATTTCCCTAGAC
GACCAGATTTTGAGCGATAACGACAAGGAAGTTGAGAACGGGTTTGACTT
CCCGACAGACGAGAGAGACCTTCTCACACCGGCCGTTTATGTAGCGCCCT
CTCACGACGATGGGTGGCAAGACATGTATGACCAACTCACCGATGACTGT
AGTGGAACAGTTGAGGAACTAGAGGTGGTTCCTGCAAGTGAGATGGGCTA
TGTGATGGACGAACACGGCGGAGGGACGCCAGACATGTGGTACTCTGTCC
AAGGGGAAGAGGACTGTTAACCACCTCATAACACCCTCGATCTCAACAAC
TGAAAAGAACTGGGAATCTATTGACAATTATTGAGAAACGTTAGAAGGCA
GAGACTGGGTAATTCATCAACTTGCTAGTCTGATTTGATTTGATCAGCTC
CTTCCATCTGTTTCGTAGCCCAGTTCTCTACAATAGTTAGCCTATCTTAT
TAGCTACAGCTGATTCTACAGTACAGTGTCCTGGCTACGGCAGGGCCCAA
ATGTATAAAAACGAGTTCGTGAAGTCGATCGTTAGGTGGAGAGCTAGGAG
CAAGAAACATTTTGACGAGAAATTGACGTTTCATGTACCGCTCAGACGCT
ATCAGAATGCTTTTGAGATTTTGGATGACTTGTTTGTGAAATTTAGCCAT
TTGAATTGTTGATCAGGTTTGATGTTACACAGGTGGTATTGGCTTATTGG
TATCAGCACGTAATGATGTACATATAAAGTTGCACAGAATACCACAGCAG
TCTGTTAGAGTTAGAATTAATGCTAAAGGACAATGAGAGCATGTTTTGCA
TGTGCATTTCTCTATATACTACATCACTGACCAATACGTGTTATGTCCAA
AGTTTAAAACGGACTTTGATTTGTTATAACGTTTTACAATTCACTAATTT
GATGGAAATTAAGACGAGCACTTCATTATGTATCGTATGACTGTTTAAAT
GTTTGTGGTTTGTTTATTGCAATGAGTTCAAGTTATGACGAAGTCGGGGG
AATATTGTATATTCTCAGAGGCGATAGAATTGAACGTTGTGTTGATGCAC
AAGGAGTGCTTAAAGAAAAGAAACATAATGAGTGACTATCTATGACTGAT
TGGTTGGAGCGATATTTTGAAAACGGTTGGACTTAGAATACAC Coding sequence (CDS) from alignment at Sc0000036:1838391..1843533+ >transcript:BL96283_cuf6 ID=transcript:BL96283_cuf6|Name=transcript:BL96283_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=4644bp|location=Sequence derived from alignment at Sc0000036:1838391..1843533+ (Branchiostoma lanceolatum)
TTCCTCATCATCATGAACATCTCCTTCACCATCATCAGCGAAAGCTTCGC
CGAGGTTCACAAGGACTTATACAACCAGGAAAACGACTATGAAATTGTGG
ACTTTCTGCTCAGCGGTCTGAAGAAAGGGTTCCGGCTGATAAAAAGCATG
GTTGTGGCAATAGACGAGGATGAGGACAGAGTTCCTGTTTACATCGACTT
CGAGCCGGAGTGCATCGTGGAGCGGTCCAACCAGCTGTTCCACTCCATCA
TCCGGCTGTACGTCAGGGAAGGGTTCGAGGATGAAGACACAAAAGTCGTC
TTGCAGGAAATGAGTGATTCAGGCATCTCCGTCGATGACTTGGCTCTATC
CGTGATGCGGGAACATCATAACCATGGGGGATCCAGGAAGGTCCATGTCT
ACCGAGAAGACATCGATGTAGAGTGGTGTCCGGAACTGAACTCAGATGGG
GAGCGTGTCTTCGTCAGCCAACCCTGCGATAGCGAATGGACTCTGAGGGA
AACTTGCAGCACGACAAAGAGGGCAGCTGGCAGATCTGGCAAGAGAGATT
CCTGTGGCTTCTCCAGGTCTAAAATTCCCAAAAGCGTCACATTTGATGAC
GTTTTTACAGCCAATGCATCGCCACCACATCATGGCCGGAGTCAGAAACC
ACCAACCGTAAATCGTCAGATGGGTAGAGACTCGTGGTACATCCCCGGAC
CCGGCTCTCCTGACAACATTGACGTTGTCCACAGCAACAGTTACCAGGCA
ACGGCGGGTCTGACTTCTACAGCTGTTTCCCGCAGTGGTACAACTGTAGC
CCTGACCACAGCCTCTACTACAGGAAAGAAGAAACCCGCTGGGTTTCCAG
CCGCAGCTGTTTACGTTGAACCTGACGAGATTTCCCTAGACGACCAGATT
TTGAGCGATAACGACAAGGAAGTTGAGAACGGGTTTGACTTCCCGACAGA
CGAGAGAGACCTTCTCACACCGGCCGTTTATGTAGCGCCCTCTCACGACG
ATGGGTGGCAAGACATGTATGACCAACTCACCGATGACTGTAGTGGAACA
GTTGAGGAACTAGAGGTGGTTCCTGCAAGTGAGATGGGCTATGTGATGGA
CGAACACGGCGGAGGGACGCCAGACATGTGGTACTCTGTCCAAGGGGAAG
AGGACTGTTAATTCCTCATCATCATGAACATCTCCTTCACCATCATCAGC
GAAAGCTTCGCCGAGGTTCACAAGGACTTATACAACCAGGAAAACGACTA
TGAAATTGTGGACTTTCTGCTCAGCGGTCTGAAGAAAGGGTTCCGGCTGA
TAAAAAGCATGGTTGTGGCAATAGACGAGGATGAGGACAGAGTTCCTGTT
TACATCGACTTCGAGCCGGAGTGCATCGTGGAGCGGTCCAACCAGCTGTT
CCACTCCATCATCCGGCTGTACGTCAGGGAAGGGTTCGAGGATGAAGACA
CAAAAGTCGTCTTGCAGGAAATGAGTGATTCAGGCATCTCCGTCGATGAC
TTGGCTCTATCCGTGATGCGGGAACATCATAACCATGGGGGATCCAGGAA
GGTCCATGTCTACCGAGAAGACATCGATGTAGAGTGGTGTCCGGAACTGA
ACTCAGATGGGGAGCGTGTCTTCGTCAGCCAACCCTGCGATAGCGAATGG
ACTCTGAGGGAAACTTGCAGCACGACAAAGAGGGCAGCTGGCAGATCTGG
CAAGAGAGATTCCTGTGGCTTCTCCAGGTCTAAAATTCCCAAAAGCGTCA
CATTTGATGACGTTTTTACAGCCAATGCATCGCCACCACATCATGGCCGG
AGTCAGAAACCACCAACCGTAAATCGTCAGATGGGTAGAGACTCGTGGTA
CATCCCCGGACCCGGCTCTCCTGACAACATTGACGTTGTCCACAGCAACA
GTTACCAGGCAACGGCGGGTCTGACTTCTACAGCTGTTTCCCGCAGTGGT
ACAACTGTAGCCCTGACCACAGCCTCTACTACAGGAAAGAAGAAACCCGC
TGGGTTTCCAGCCGCAGCTGTTTACGTTGAACCTGACGAGATTTCCCTAG
ACGACCAGATTTTGAGCGATAACGACAAGGAAGTTGAGAACGGGTTTGAC
TTCCCGACAGACGAGAGAGACCTTCTCACACCGGCCGTTTATGTAGCGCC
CTCTCACGACGATGGGTGGCAAGACATGTATGACCAACTCACCGATGACT
GTAGTGGAACAGTTGAGGAACTAGAGGTGGTTCCTGCAAGTGAGATGGGC
TATGTGATGGACGAACACGGCGGAGGGACGCCAGACATGTGGTACTCTGT
CCAAGGGGAAGAGGACTGTTAATTCCTCATCATCATGAACATCTCCTTCA
CCATCATCAGCGAAAGCTTCGCCGAGGTTCACAAGGACTTATACAACCAG
GAAAACGACTATGAAATTGTGGACTTTCTGCTCAGCGGTCTGAAGAAAGG
GTTCCGGCTGATAAAAAGCATGGTTGTGGCAATAGACGAGGATGAGGACA
GAGTTCCTGTTTACATCGACTTCGAGCCGGAGTGCATCGTGGAGCGGTCC
AACCAGCTGTTCCACTCCATCATCCGGCTGTACGTCAGGGAAGGGTTCGA
GGATGAAGACACAAAAGTCGTCTTGCAGGAAATGAGTGATTCAGGCATCT
CCGTCGATGACTTGGCTCTATCCGTGATGCGGGAACATCATAACCATGGG
GGATCCAGGAAGGTCCATGTCTACCGAGAAGACATCGATGTAGAGTGGTG
TCCGGAACTGAACTCAGATGGGGAGCGTGTCTTCGTCAGCCAACCCTGCG
ATAGCGAATGGACTCTGAGGGAAACTTGCAGCACGACAAAGAGGGCAGCT
GGCAGATCTGGCAAGAGAGATTCCTGTGGCTTCTCCAGGTCTAAAATTCC
CAAAAGCGTCACATTTGATGACGTTTTTACAGCCAATGCATCGCCACCAC
ATCATGGCCGGAGTCAGAAACCACCAACCGTAAATCGTCAGATGGGTAGA
GACTCGTGGTACATCCCCGGACCCGGCTCTCCTGACAACATTGACGTTGT
CCACAGCAACAGTTACCAGGCAACGGCGGGTCTGACTTCTACAGCTGTTT
CCCGCAGTGGTACAACTGTAGCCCTGACCACAGCCTCTACTACAGGAAAG
AAGAAACCCGCTGGGTTTCCAGCCGCAGCTGTTTACGTTGAACCTGACGA
GATTTCCCTAGACGACCAGATTTTGAGCGATAACGACAAGGAAGTTGAGA
ACGGGTTTGACTTCCCGACAGACGAGAGAGACCTTCTCACACCGGCCGTT
TATGTAGCGCCCTCTCACGACGATGGGTGGCAAGACATGTATGACCAACT
CACCGATGACTGTAGTGGAACAGTTGAGGAACTAGAGGTGGTTCCTGCAA
GTGAGATGGGCTATGTGATGGACGAACACGGCGGAGGGACGCCAGACATG
TGGTACTCTGTCCAAGGGGAAGAGGACTGTTAATTCCTCATCATCATGAA
CATCTCCTTCACCATCATCAGCGAAAGCTTCGCCGAGGTTCACAAGGACT
TATACAACCAGGAAAACGACTATGAAATTGTGGACTTTCTGCTCAGCGGT
CTGAAGAAAGGGTTCCGGCTGATAAAAAGCATGGTTGTGGCAATAGACGA
GGATGAGGACAGAGTTCCTGTTTACATCGACTTCGAGCCGGAGTGCATCG
TGGAGCGGTCCAACCAGCTGTTCCACTCCATCATCCGGCTGTACGTCAGG
GAAGGGTTCGAGGATGAAGACACAAAAGTCGTCTTGCAGGAAATGAGTGA
TTCAGGCATCTCCGTCGATGACTTGGCTCTATCCGTGATGCGGGAACATC
ATAACCATGGGGGATCCAGGAAGGTCCATGTCTACCGAGAAGACATCGAT
GTAGAGTGGTGTCCGGAACTGAACTCAGATGGGGAGCGTGTCTTCGTCAG
CCAACCCTGCGATAGCGAATGGACTCTGAGGGAAACTTGCAGCACGACAA
AGAGGGCAGCTGGCAGATCTGGCAAGAGAGATTCCTGTGGCTTCTCCAGG
TCTAAAATTCCCAAAAGCGTCACATTTGATGACGTTTTTACAGCCAATGC
ATCGCCACCACATCATGGCCGGAGTCAGAAACCACCAACCGTAAATCGTC
AGATGGGTAGAGACTCGTGGTACATCCCCGGACCCGGCTCTCCTGACAAC
ATTGACGTTGTCCACAGCAACAGTTACCAGGCAACGGCGGGTCTGACTTC
TACAGCTGTTTCCCGCAGTGGTACAACTGTAGCCCTGACCACAGCCTCTA
CTACAGGAAAGAAGAAACCCGCTGGGTTTCCAGCCGCAGCTGTTTACGTT
GAACCTGACGAGATTTCCCTAGACGACCAGATTTTGAGCGATAACGACAA
GGAAGTTGAGAACGGGTTTGACTTCCCGACAGACGAGAGAGACCTTCTCA
CACCGGCCGTTTATGTAGCGCCCTCTCACGACGATGGGTGGCAAGACATG
TATGACCAACTCACCGATGACTGTAGTGGAACAGTTGAGGAACTAGAGGT
GGTTCCTGCAAGTGAGATGGGCTATGTGATGGACGAACACGGCGGAGGGA
CGCCAGACATGTGGTACTCTGTCCAAGGGGAAGAGGACTGTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000036 | genome | Sc0000036:1838391..1843533 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96283_cuf6 |
| Biotype | protein_coding |
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