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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96262_cuf1 >transcript:BL96262_cuf1-protein ID=transcript:BL96262_cuf1-protein|Name=transcript:BL96262_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=208bp
VSMGFTRMAVGVCQRKGNDKECPADSHMSRCKGRCRPTCTNPNPACRRLC
VRGCSCDKGYVWEGKKCIPLEQCQSTGGERKPDVSSADTCAEPKKVGLCR
AARRRFYFDSSERKCKSFIYGGCGGNRNNFLTMRDCEATCAVKDLKLANS
VVKGQNCPAHSRWSQCGSACRPSCENPSPACTRQCVPGCTCEIGRVWEGD
GCVLLSDC Run BLAST on NCBI mRNA from alignment at Sc0000098:700815..703097- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96262_cuf1 ID=transcript:BL96262_cuf1|Name=transcript:BL96262_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2283bp|location=Sequence derived from alignment at Sc0000098:700815..703097- (Branchiostoma lanceolatum)
CAGTCAGCATGGGATTCACACGCATGGCGGTGGGAGTCTGTCAACGTAAA
GGTAAGTTCATTATCTAGATCATCAACCTCACGACGTGAGGCAGTGGTAT
AACACGAGAGAAGAAATTTAGTACCAACTCTCTCTTCTTGGATAAACATC
AGATTCTATAAGTCTCCCATTCCACTAGACGGCGATCGCGCTGCACTCTC
ACTGCGACCCAGAACGGATTTGTGTAGCCCTTGATTTCATAATTGGGATA
TTGAGCAGAATGTTAAGTATGACAGCAAAACACATAAAGTGTAACAAGAT
TCATTCTTTATCTATGAAATTCGTTGAGCTCTCTGTTAAAGTTTATGTCG
TAGAGAGCGCGCGGCGAGAGCGACGTCCTAGCGTAACGGGGGTATAAGTC
ATCCTCTTATGTTCATATAGGCAATGATAAGGAGTGCCCTGCGGACAGCC
ACATGTCCCGGTGTAAAGGACGATGCCGCCCTACCTGCACCAACCCGAAC
CCTGCGTGCCGGCGGCTCTGCGTCCGAGGCTGCAGCTGTGATAAAGGCTA
CGTCTGGGAAGGAAAGAAATGTATCCCGCTGGAGCAGTGTCAATCAACCG
GCGGTGAACGTGAGTTTCAAGATGTTCGTTATGTCATTTACGACGGAAAG
AGGTTGTTTACAAATCTTTGCTTTTCCGAATCCTGCACACATGATTGTAT
GGAAGGACGATACGAGTTTTGTTCTTTTCATACCAATTAGTTAGCTAGCT
TAAAGCTGTGGTTATAGATGGATATGAATTGTTGGGGTGTGGTGTGTTAC
TTGCGATGTGGTGACGGATGCATCACGCTTGATGAATACATGTTAAGTGA
TAAACCGCCTCAGTATGAAGCTATGAATTCACGGGAAGCAGCCGGTAATG
CTTAGGTCACATTTCCAAACCTGAGCAGCTTGCGGGAACGAAAAGTATGA
TATAGAATACAACAAAGGACACAAAACGTAAGAAATTTACTCCTAACTAG
AAATTGTGTATTTTCTTGATATGCATATTTCATTTTTCGTTTTCGCAAAC
ATCCCGACTGGGCCCCGGCTAGGAAATGTGATCCTAGCATAACCGGTATC
TGTTGTTCCCAGTACAGCGGCCAAGTCCCATGTTCAGCAGAACACTATCA
CAATGTTTATAGTTGACTTGATTGTTATGAGATAGGCCCATATAAACCCT
AGATAGGGAGAGATTGTGTTATGCTTTCCCCCGACCGGGCCCAAAAATAC
CCCGGCAACCGCAGGGTGTCCGACGGGGCCACGTAGGGGTCACGCCCGAA
AGTGACAAAATACAGCCCGTGAATTACCCGGCGGGCCCCTTTTTCATATT
GCAACCGAAGTATATATCAAACACAGAAAGATAATGTATCGGTATCTCTT
TTGGCTACTGATACAACTAATAATCAAGCGACAACTGACGACATCAGTTA
CAGGATCATGAGTGAGACGATCACACATTGTATTACATATTTTGTACTCA
CGATGTACTTCATGTTACACTTAACTTTCATTTCTCGCTCACTCTCCAGG
GAAGCCGGACGTCAGCTCAGCGGACACGTGCGCCGAGCCGAAGAAGGTCG
GGCTCTGCCGGGCTGCCCGCAGGCGGTTCTACTTCGATTCTTCCGAAAGG
AAGTGCAAGTCGTTCATATATGGAGGCTGTGGAGGGAACAGGAACAACTT
CCTCACCATGAGGGACTGTGAGGCAACTTGTGCTGTCAAAGATCTAAAAC
TTGCCAACAGCGTTGTCAAAGGTATGTTGTAGAAGGGAAGATTAGAAAAA
AATAACACGAGAGAGCAAGGTGCATAGAGAGTGCATGTTTAGACTAATTT
TTGCACGGTGGGACATTTCATCTTGAAAACTGAGGAAGCAAATTTCTACT
AAATACTATTATTCCCCATTCTAACCCCCGGCGCAATTGAGAAATGTATT
CTCGCGAGAGCTGGAGCACGTGTGCGCGAGTTGGGTGAAAACGAGAGTTG
AGTGGTAAAATTTGTCATAGCGGTCTACCTTCTAATTCTATTTGTGGCCC
AAATTTCCGCCGGAGTTTTGGAAACGGGTCCGTTCAATTTTCTCGTCCTT
TTTTCCTTCCTTATTAGGACAAAACTGCCCCGCCCATAGCCGGTGGTCAC
AGTGCGGCTCAGCCTGTCGGCCATCTTGTGAGAACCCTTCTCCGGCCTGC
ACCCGGCAGTGCGTACCCGGATGCACCTGCGAGATCGGACGAGTATGGGA
GGGCGATGGGTGTGTTCTTCTCTCAGACTGTCC Coding sequence (CDS) from alignment at Sc0000098:700815..703097- >transcript:BL96262_cuf1 ID=transcript:BL96262_cuf1|Name=transcript:BL96262_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2496bp|location=Sequence derived from alignment at Sc0000098:700815..703097- (Branchiostoma lanceolatum)
GTCAGCATGGGATTCACACGCATGGCGGTGGGAGTCTGTCAACGTAAAGG
CAATGATAAGGAGTGCCCTGCGGACAGCCACATGTCCCGGTGTAAAGGAC
GATGCCGCCCTACCTGCACCAACCCGAACCCTGCGTGCCGGCGGCTCTGC
GTCCGAGGCTGCAGCTGTGATAAAGGCTACGTCTGGGAAGGAAAGAAATG
TATCCCGCTGGAGCAGTGTCAATCAACCGGCGGTGAACGGAAGCCGGACG
TCAGCTCAGCGGACACGTGCGCCGAGCCGAAGAAGGTCGGGCTCTGCCGG
GCTGCCCGCAGGCGGTTCTACTTCGATTCTTCCGAAAGGAAGTGCAAGTC
GTTCATATATGGAGGCTGTGGAGGGAACAGGAACAACTTCCTCACCATGA
GGGACTGTGAGGCAACTTGTGCTGTCAAAGATCTAAAACTTGCCAACAGC
GTTGTCAAAGGACAAAACTGCCCCGCCCATAGCCGGTGGTCACAGTGCGG
CTCAGCCTGTCGGCCATCTTGTGAGAACCCTTCTCCGGCCTGCACCCGGC
AGTGCGTACCCGGATGCACCTGCGAGATCGGACGAGTATGGGAGGGCGAT
GGGTGTGTTCTTCTCTCAGACTGTGTCAGCATGGGATTCACACGCATGGC
GGTGGGAGTCTGTCAACGTAAAGGCAATGATAAGGAGTGCCCTGCGGACA
GCCACATGTCCCGGTGTAAAGGACGATGCCGCCCTACCTGCACCAACCCG
AACCCTGCGTGCCGGCGGCTCTGCGTCCGAGGCTGCAGCTGTGATAAAGG
CTACGTCTGGGAAGGAAAGAAATGTATCCCGCTGGAGCAGTGTCAATCAA
CCGGCGGTGAACGGAAGCCGGACGTCAGCTCAGCGGACACGTGCGCCGAG
CCGAAGAAGGTCGGGCTCTGCCGGGCTGCCCGCAGGCGGTTCTACTTCGA
TTCTTCCGAAAGGAAGTGCAAGTCGTTCATATATGGAGGCTGTGGAGGGA
ACAGGAACAACTTCCTCACCATGAGGGACTGTGAGGCAACTTGTGCTGTC
AAAGATCTAAAACTTGCCAACAGCGTTGTCAAAGGACAAAACTGCCCCGC
CCATAGCCGGTGGTCACAGTGCGGCTCAGCCTGTCGGCCATCTTGTGAGA
ACCCTTCTCCGGCCTGCACCCGGCAGTGCGTACCCGGATGCACCTGCGAG
ATCGGACGAGTATGGGAGGGCGATGGGTGTGTTCTTCTCTCAGACTGTGT
CAGCATGGGATTCACACGCATGGCGGTGGGAGTCTGTCAACGTAAAGGCA
ATGATAAGGAGTGCCCTGCGGACAGCCACATGTCCCGGTGTAAAGGACGA
TGCCGCCCTACCTGCACCAACCCGAACCCTGCGTGCCGGCGGCTCTGCGT
CCGAGGCTGCAGCTGTGATAAAGGCTACGTCTGGGAAGGAAAGAAATGTA
TCCCGCTGGAGCAGTGTCAATCAACCGGCGGTGAACGGAAGCCGGACGTC
AGCTCAGCGGACACGTGCGCCGAGCCGAAGAAGGTCGGGCTCTGCCGGGC
TGCCCGCAGGCGGTTCTACTTCGATTCTTCCGAAAGGAAGTGCAAGTCGT
TCATATATGGAGGCTGTGGAGGGAACAGGAACAACTTCCTCACCATGAGG
GACTGTGAGGCAACTTGTGCTGTCAAAGATCTAAAACTTGCCAACAGCGT
TGTCAAAGGACAAAACTGCCCCGCCCATAGCCGGTGGTCACAGTGCGGCT
CAGCCTGTCGGCCATCTTGTGAGAACCCTTCTCCGGCCTGCACCCGGCAG
TGCGTACCCGGATGCACCTGCGAGATCGGACGAGTATGGGAGGGCGATGG
GTGTGTTCTTCTCTCAGACTGTGTCAGCATGGGATTCACACGCATGGCGG
TGGGAGTCTGTCAACGTAAAGGCAATGATAAGGAGTGCCCTGCGGACAGC
CACATGTCCCGGTGTAAAGGACGATGCCGCCCTACCTGCACCAACCCGAA
CCCTGCGTGCCGGCGGCTCTGCGTCCGAGGCTGCAGCTGTGATAAAGGCT
ACGTCTGGGAAGGAAAGAAATGTATCCCGCTGGAGCAGTGTCAATCAACC
GGCGGTGAACGGAAGCCGGACGTCAGCTCAGCGGACACGTGCGCCGAGCC
GAAGAAGGTCGGGCTCTGCCGGGCTGCCCGCAGGCGGTTCTACTTCGATT
CTTCCGAAAGGAAGTGCAAGTCGTTCATATATGGAGGCTGTGGAGGGAAC
AGGAACAACTTCCTCACCATGAGGGACTGTGAGGCAACTTGTGCTGTCAA
AGATCTAAAACTTGCCAACAGCGTTGTCAAAGGACAAAACTGCCCCGCCC
ATAGCCGGTGGTCACAGTGCGGCTCAGCCTGTCGGCCATCTTGTGAGAAC
CCTTCTCCGGCCTGCACCCGGCAGTGCGTACCCGGATGCACCTGCGAGAT
CGGACGAGTATGGGAGGGCGATGGGTGTGTTCTTCTCTCAGACTGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000098 | genome | Sc0000098:700815..703097 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96262_cuf1 |
| Biotype | protein_coding |
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