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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96258_cuf2 >transcript:BL96258_cuf2-protein ID=transcript:BL96258_cuf2-protein|Name=transcript:BL96258_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=237bp
MPLFHLATTVGPCVILVVLMIITFIMPIDRGDRISFGVTIQLSVVMCLVF
VTEVLPVKGALPFFAALIVVCMGLMGIFLFFTIGIIKIHDKEGSLSPMAK
TFFLHYMAKFFLLGDLTEKEAAGGDGEAGLTGRKLAWPARAILVAPADDL
ANVNEETSAEVSKTTRQPSVPPAPLEVAVSAGISSLTSSVEELAKAMKNE
QEVSDYTLLAKVLDRLCLVLYVISIAVSVPMVMYLSK Run BLAST on NCBI mRNA from alignment at Sc0000381:112971..120590+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96258_cuf2 ID=transcript:BL96258_cuf2|Name=transcript:BL96258_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=7620bp|location=Sequence derived from alignment at Sc0000381:112971..120590+ (Branchiostoma lanceolatum)
TGGGACTGACACGGACAACACCGGGACCGGGACCAAGGCTGTGGCTGAGA
ACCATCGCCCGTTCATCATCAGCTTCAACGGCTATGTGGAACAGATCGTC
GACTTGGTAAGTTTAAGACTGTCTGTAACACATTTGAGATTCATGTAGGT
TTCTAACAAATATATGACTCATGGAGGTTACAAAACTGATCGATACTATA
ACTGTTATTTCAGGATGAAAAGAAGGAGTTCCTGGTTGCCTCTGTTGTCA
TCGACTTCGTAAGCTGACCTATTTATTAACTTTTCATTCTAATTATGTCA
TTTTGTTGAATTTGTTCATAGTTATGATATGCACAACAACAAAATTATAA
TGTTTTGTTCCAGACATGGCAGGACAGCCGACTGGAGTGGGACCTTAAGT
ACTACGAGAACATTGAGAGCCTCACCGTCCCGGGCAGCAGCATCTGGACC
CCTACATTTACTCTGAAGAGGAAGTATGTACTCTTTTCGTTAACTATTGT
CATTGTATCAAGATTTAATCATGTTAAATCTGCTTTTGTAGACAGATAAT
GAATTGTACTAAAGATATTGTTTTGCTAGCAGGACGCGTGGTGTAGAGGT
CTGCATACTGGCCACTTGCCTTTCTGTTTCAAATGCTGTGAAGCCAGGGG
CCCTGGGTTTGTGCCCGGGTCTGGACACGACTGGAAAAGAGACGCGTCAC
CTTTTTGGAGTGGGGCGTAAAGCCATCGGCCCCATGTATGAGGTCGAGCT
TTAGGCGTTAGCCTTCAGCGCCAACACTCTGCTCATAAAAGAACCCAACA
CACTTATCGAGAAGAATAGGGGCGACGTAGAATGCTTGGACAAAAATGCG
AGCCGTAGCGAAACCGCAGCGCACTTACCACTAGCTACGTAAAAAAGCAT
GATGATTCACCTCAATTGAGTATAACTGCTATATCTTAAGCAGAAACAAT
ATTCTGAATTTACAGTGCCTTAGCTGGACTCTACATAACTCCAGTATAAA
AACATGAACATTTTTGTGACTTTAATCAAGTTCCTGGGAAACAATTCTGT
GAGTATAGTTTGATCAGTTGATAAACACAGGCGGAAAAAAGGATCTTTAG
TTTTCACACAACCAGAAAGTATCTGAAGAAGGTAGCCTTTAAGGGATAGT
GTCTTTTTTTAACCCAACCTAAGGAAGATTACCGGAGTAATGGCTTCAGA
CATACAAGGAATATCATTCCACTAGTGGAAAAAGCATTTTAACTTTTTAA
TCCAACCCTTGTCCAACACAACAGAATGACAAGCTCATGTGCGAGGAAAC
AGTGGTTTCAGAAAATTATGATACTGACTAGTCTAAGGAAATGACAAGAC
TTTATTGGTTACTTCACAGTGCTAACCCTTTGTACGAAGGCCTACCAAAG
GATGTACCACTCCGGGTCAGCCTAAATGGTACGGTAACATGGAGGGTAGA
AACTCTGACCAGCACCATTTGTGAAGCAGACCCGTTCTTCTTCCCTGCTG
ACACCATGACATGCGACATCTGTTTTTCTGCATTCTCAGCAATTGAGGAA
TTCATTGGTAAAGCTTTACAAATATATCATGAAAGGATATTGATATCCAT
AAGTTCACCTTACGAGGCCAGTTCAATAGAGATTTTCTCTTACTTATTTC
AGGTTACTTGTAATTGTAGAAGACATAAACTTGTTTAACCCTCATCCGAC
CGTATGGGGTCCGTTTGGACCCCAGGCGTGTTTAAATGTGTGCCATATCA
ACATTTTTCGTTGGAGAAAAAAATTCCTTCCATGAGTTTATTCATGTACA
TGTCTTACAACTCCTGAGAAATTTCTACCGGGATTGGCCGATTTTTGCGG
AAGTTATACCCTAAAGTGTGCGTGTTGTCCGCTGGGGTCCAAACGGACCC
CAGATAATTTCGCATTGTTTATCACGTAATTAGAAAGAAATTCCTCATAA
CTTCCAAACGGTATAATGTATCCTCACCAAATTTACAGGGAGTGATGTTC
ACGTAAAGTTTTATAATTTCTGTAAATTTTGTGACGTTATGACGTAATAT
TACGTAATTATGACGTCATCGATGTGATTTTATAGGCTAAATAGGGAAGT
CCCATAATATTGAAAGGTATTAAACAAAATAGAGTGTATTATTGATTTTA
AGGTATGCCAAGGCATACAACGTCAATGGAGATTACGTTGACGTCAAAAT
GGCGTCATAGAATGACGTCATGTGTCGTAAGTGATCCCTGTCATCCGCCA
TCTTGGATCGGCCATTTTGAAATTTCTAAATTACATTTTTTACATTTATG
ACCCCAAATCACAAAAGAAAGAGACTGGAAACGTTAATCTGAATGTTTCT
GGTTAAGAAAATACCAGGTAGTGACGGATTTGAAGGCAAAAAGCCTGTTT
ATACCTAAAATAAACATCTTGTCTGCCATCTTGGATTTTTAGCGCTTACG
TAATCAAATTAGCATAAATTATGAATAATAAATCATGAAAGTTACATCTA
AATACATATGATGTTATACATGTTGAAAAACTAGTGTGGTTGAACAAGAA
AACCTGAGAAATATCATTGTTTTTAAAAAATTAGTGACTTTTTGTATAAA
ATGCCTGTCAGAAACCCGTTGCCATGGCAACAGGAAAAATGATAAACTTA
AACTATTATCATGGAATTGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGATGTCAAAGTTGGCGCGGGCCCTTTTTGCCCCCC
CCCCCCAGTTTAGATAGGGTTAAAGGAAAATGCGGGTTCTCCTCATTTTC
TGCATAAATTATCATAATGAGCTTAAATCATCAACACCAAAACTTATCAA
AATATTCTCCATAGATTATAGTAACAGGATATGTACAATAACTACAATAA
GATCCACCAGAAATATATTTAGGGGGCAAAGCAAAATGGGGTCCGTTTGG
ACCCATACGGCCAGATTCGTCGCAAAAATGTGTCGGTCGGATGAGGGTTA
AGTGGGAAAGACCTGACTGACAAGATGTATGATAGGGAAAACTGAAAGAT
GAATTTTATGTTGCTTCAACTCTTTAATGAAGTGAGAAACATGATCATGA
TGATTCTGTAGAATGCTGATATTGTACATGTACAATAATGCATATCTGTC
AAGTTACCTGCTTGTTTTTATTCCCGAACACTAAATAGCTTCTCCTTTAC
AGGTACCGGTGTGAATGTAGAGTACGGTGTGATGATAGAGCCGGTGAAAA
ACTTGATAGGCTAACTCATAAACTTACAGGACCAAAAATGGATTCTAACC
TGCCCCGAAAATGTGATTTTTTCAGTCGAGGTTTCAGCAAACTTTTAGTC
ACCCTTTGAAGGCTAAATTAAATGCTTCTCCTTTTCTCATGGTGACTTAA
CGACAAGAATGCATTCCTGAACGTGGCAAGAAGTAGTATATTCGATGCCA
GTTATGATCGGGAATGCCTTCTTGTCACAAGAGTTAAGCCCTTGGTCTAA
GAAACAGAGCCGTGAGGTTGTTGAAATATCGACAGAAAAAATCGCATAAG
AAGATGGTGTGTTATACGCCTAATGGCGGTTATACCGGCTAAATAGATTC
AGATTCAGAAGAATCCAGTATACGTATTATTAGTCATTGCTCTGCTTTCC
ATAAGTATCTGTATACCTTCTGGAGATATCTTGATGTTGATTTGTTGGAA
TGATTTGTTGGACACAGAATGCGGAGAGGGCAGTACCTGTGACGTCTGGT
CTACCGCAGAACCTGAGGGTGAGTGGAATCGGAAGGACAAAATCTCCGCA
AGAGACAACAAGGAGGCGTGCTTCACTCTTCAGCTGGACAGGATGCCCCT
GTTCCACCTCGCCACGACTGTCGGGCCCTGCGTCATCCTGGTGGTGCTGA
TGATCATCACCTTCATCATGCCCATAGACAGGGGAGACCGGATCTCCTTC
GGAGTGACCATCCAACTCTCTGTGGTCATGTGCCTCGTGTTTGTCACAGA
GGTACTTCCTGTCAAGGGAGCACTGCCATTTTTCGGTGAGTAAAGACAGA
TGTATAAAGTTGTGCTGTTCTTATTTCTATTTGCTGTTTTTAAACTACAT
CATTTGAAAACAAAGTTAAGCTTTTGATTAGAATATTTTTTTTGCTGCTT
ACTGGAAAATGAGGCTCTTGCATCACAACCTAGATGATATTTCTGTAACT
CCTCAACTTCTTTTCGTTGGCCCAAAATGGACCCTGCTTAGTCTATGTTA
CTGTTAAGATTCAAGCATCTCATTTTCCAATAACCAATCCGATGAACATA
ATCCACAGAACATTCCGCTAACTTATGATTTATCATGAATATGTTACAGC
CGCGCTGATCGTCGTGTGCATGGGCCTGATGGGAATTTTCCTCTTCTTCA
CCATCGGCATCATCAAGATCCACGACAAGGAGGGGAGCCTGTCTCCAATG
GCGAAGACTTTCTTTCTCCACTACATGGCAAAGTATGTACCGCTTGTAAC
AAATACAAACATTATTTCACCAGGATCCATAATTCCGCGTGTTGTTACCC
TGAGATGAGGCATTCAAACAGACATCCAACCCAATGCACTCCTTGATAAT
TATCAGTGTATTACCTGAGGGTGCTTACTCAAAACCACTGTTTTTCAAAG
TGGCATATTTGTGTAAACTGACAGATTAATGTTAACGGAGGTATAACGAG
ATATAACGAGGTACAATAATATCTAGGGTTAGACTAAGTTGCAGAAGACA
ACATATTGCAAAATATGTATAAACCCAGCGGGCATACTTGTTTGTTTCCA
TGTTTTGTTTTGTGGGTTGCTAAGATTTCTTTCCAACTTTTCACTTGAGC
TGGGAACAAAGTGATCAACCTCTCAGGACAGCTTTGATAATTTTGGATTT
AATAAAGTCAAATTAGCAGCTTCACCTCAAAAATTCACCTGCTATTCTTC
CAAGCAGAATGTTACAAGCATGTGATCAAGAGAATATTGTTGTCCTGATA
GATTCAGATTACTATTTTGTTGGAATCCTTTCGGTAACATTTCATATTTT
CGGTGCATCTTTTGTGAAAAAGGTGACCTGAACTTTTGACCATTCATATA
TCAATCCACAATAGTGGATGTAAATGACTGTAGACATGAGTGAGAGACAT
CCACATCATCTTCTTTCCTTCTCGTTGATGTTTGTTCAGGTTCTTTCTGC
TCGGAGACCTTACAGAGAAGGAGGCTGCGGGCGGGGATGGAGAGGCTGGC
CTGACCGGCAGGAAGCTGGCCTGGCCTGCACGGGCCATCCTCGTGGCCCC
TGCCGACGACTTGGCGAATGTCAACGAGGAAACCTCGGCTGAGGTCTCCA
AGACAACCCGCCAGCCGTCCGTGCCGCCCGCACCCCTGGAGGTCGCTGTG
TCGGCCGGCATCAGTAGCCTGACCAGCAGTGTGGAGGAGCTGGCCAAGGC
CATGAAGAACGAGCAGGAGGTGTCCGATTACACCCTGCTGGCCAAGGTCC
TGGACAGGCTGTGCCTTGTCCTGTACGTCATCAGTATTGCCGTGTCCGTG
CCCATGGTCATGTATCTGAGCAAGTAAAGATAGTGTTGACACTCAGGGAC
TGTGTAATAAACACACCGAAACACCATCACTGAGTCGAACTTATTATCAT
TATTAAGTGATTTAACTCTGAAAAATGTGCATGAACAGCCATGGCTACCC
AACAAGCATGCGGCTGTTACAAAGGGTTAGTACTTTCATTAGGAGCTATT
AACCCATAAGTGGAACAAGCCTATGGTGCATTTAAAACAGAAAAGAATTT
TTATTCAGTTTTAACTTATTTATTTATTTATTTATTTATTCATGTATATT
ATTTATTCATCTAAGCAGGAAAGACAGATGGTCTAGAGGCGTTTTCAGCG
TGTAATTGGGGAAGTCCTCAAATTAGGTTAGTGAGCGACCTTCATGTAAA
TATCTTGCACCTCAAATCTAAGATGGAGAAGCTAGTCTGAGAATATTTCA
GCTGCAAACTCATCTAAAGTTCATAGAATAGACATGATTGACGAGTTTGG
ATTGTAAACAAACCCAAACACAACAAACCTAACTGTTAGAATTTTATTTA
CCAGGTACTGAGTGTACTTTTATCCATCAGTTAAACTATGTTGAAAGGAC
ATATACATGTATGTACAATCAGATATGTACAGACAGTACTGCCTTACTAG
CCAGAGCCTATTACAAAGGACTAGCAATGCTGATGGAAAAAAATGAAAAA
GAAAATATCCAGCTGTTACATGTAAACTACTGTTTCCTGATCTTTGTAAC
ATTATGCATCCTTATGATGTTCTATTATATTGTGTGTAATCATTAGACCA
TAGGTATATTGATTTTATCATATAGATGACATCCTTGCGCGCATCAATTT
CCGCCCGTTTCTAAAAAGAAAATACTGTAAATCATACAGAGCAGTTGTAA
AAGGAGAAAATATAACGTTATGCCGTGAATTGCAAAAAAAAAGATTTTGG
AAAACGTATACTAATATCATAGAATGCCAAAGTCAAGTCAAAAGTCAAAG
AAGAAGAAGTGAAAGAACAGAAATGAAGAATCTATTATTTGGTATACCAT
ACTCTGTGTGTTTAGTGTTGTTCATCCATCCTGACCACGTAGATTTCATA
ATGAAGGCAACTTTTTTTCCAAACTTTTTTTTATTTGCACGCTCACATCA
GTTTTCAGGTTACCAGAGGATGTCATCCATATAAACAAATCTACATGGCC
TTACCGGTATAACCGGAGAATGTGTGTGTAACTATCATTTTAGAATAACT
GATATATATAAGTATATCATTTTAAAATTGTTGAAGCAACAATATTTTAT
GTTTAACTTAAGACAGCCTGTAACCCATACACTACCAAAAATCGTTTTTC
TTATTTTTGTTGTTTTTCCTTCTACAAAGAATTTTTTTCTGTCAGCAAGA
ATATTATTCTGTATACAAGAATCCCTGTTTTAAGCACAAACAAGAATCCC
TGTTTGAAGCACAAACAAGAATTGCATCTAAGAATTTTTTTCTTAATTCA
ACTGAAACCAAGAAAGTTCAAGAAAGAAGTTCAAGTAGAATCAAATCTTT
TAAAAAAATTATGGGAAGAATCTGTAAGAATACAAATTTGACGAAACGAA
AAACAAATCTTATATTAAGCCAGAGAAAGCACATTTATCTTATTTTTTCT
AGAAAATTCTTATTGAAAAACAGCATGCTAGAAATATTTTCTTAAAATAA
GTTAATTCAGAACAAAAAAGAATAAAGTTATTTGTGTAAGAATTGACAAA
GGCAAGACTTCCCAGAGGGTTTCTTGAATTTTCTTGTTTTCCTTTGTATA
AGAAAATCTTTCTCAACATAAGAAAACAGTAAAAATAAGAGAGAATAAGA
CAAAAGATTTTCGGTAGTGTACATGATGAAGATGAACAACAACGAACGGA
GGGGTTTGTCTGATTTTATTCGTGCATGCTTACCATTCCCTTAATGCATT
ACTGCATTGTTAAAAAGTGC Coding sequence (CDS) from alignment at Sc0000381:112971..120590+ >transcript:BL96258_cuf2 ID=transcript:BL96258_cuf2|Name=transcript:BL96258_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2142bp|location=Sequence derived from alignment at Sc0000381:112971..120590+ (Branchiostoma lanceolatum)
ATGCCCCTGTTCCACCTCGCCACGACTGTCGGGCCCTGCGTCATCCTGGT
GGTGCTGATGATCATCACCTTCATCATGCCCATAGACAGGGGAGACCGGA
TCTCCTTCGGAGTGACCATCCAACTCTCTGTGGTCATGTGCCTCGTGTTT
GTCACAGAGGTACTTCCTGTCAAGGGAGCACTGCCATTTTTCGCCGCGCT
GATCGTCGTGTGCATGGGCCTGATGGGAATTTTCCTCTTCTTCACCATCG
GCATCATCAAGATCCACGACAAGGAGGGGAGCCTGTCTCCAATGGCGAAG
ACTTTCTTTCTCCACTACATGGCAAAGTTCTTTCTGCTCGGAGACCTTAC
AGAGAAGGAGGCTGCGGGCGGGGATGGAGAGGCTGGCCTGACCGGCAGGA
AGCTGGCCTGGCCTGCACGGGCCATCCTCGTGGCCCCTGCCGACGACTTG
GCGAATGTCAACGAGGAAACCTCGGCTGAGGTCTCCAAGACAACCCGCCA
GCCGTCCGTGCCGCCCGCACCCCTGGAGGTCGCTGTGTCGGCCGGCATCA
GTAGCCTGACCAGCAGTGTGGAGGAGCTGGCCAAGGCCATGAAGAACGAG
CAGGAGGTGTCCGATTACACCCTGCTGGCCAAGGTCCTGGACAGGCTGTG
CCTTGTCCTGTACGTCATCAGTATTGCCGTGTCCGTGCCCATGGTCATGT
ATCTGAGCAAGTAAATGCCCCTGTTCCACCTCGCCACGACTGTCGGGCCC
TGCGTCATCCTGGTGGTGCTGATGATCATCACCTTCATCATGCCCATAGA
CAGGGGAGACCGGATCTCCTTCGGAGTGACCATCCAACTCTCTGTGGTCA
TGTGCCTCGTGTTTGTCACAGAGGTACTTCCTGTCAAGGGAGCACTGCCA
TTTTTCGCCGCGCTGATCGTCGTGTGCATGGGCCTGATGGGAATTTTCCT
CTTCTTCACCATCGGCATCATCAAGATCCACGACAAGGAGGGGAGCCTGT
CTCCAATGGCGAAGACTTTCTTTCTCCACTACATGGCAAAGTTCTTTCTG
CTCGGAGACCTTACAGAGAAGGAGGCTGCGGGCGGGGATGGAGAGGCTGG
CCTGACCGGCAGGAAGCTGGCCTGGCCTGCACGGGCCATCCTCGTGGCCC
CTGCCGACGACTTGGCGAATGTCAACGAGGAAACCTCGGCTGAGGTCTCC
AAGACAACCCGCCAGCCGTCCGTGCCGCCCGCACCCCTGGAGGTCGCTGT
GTCGGCCGGCATCAGTAGCCTGACCAGCAGTGTGGAGGAGCTGGCCAAGG
CCATGAAGAACGAGCAGGAGGTGTCCGATTACACCCTGCTGGCCAAGGTC
CTGGACAGGCTGTGCCTTGTCCTGTACGTCATCAGTATTGCCGTGTCCGT
GCCCATGGTCATGTATCTGAGCAAGTAAATGCCCCTGTTCCACCTCGCCA
CGACTGTCGGGCCCTGCGTCATCCTGGTGGTGCTGATGATCATCACCTTC
ATCATGCCCATAGACAGGGGAGACCGGATCTCCTTCGGAGTGACCATCCA
ACTCTCTGTGGTCATGTGCCTCGTGTTTGTCACAGAGGTACTTCCTGTCA
AGGGAGCACTGCCATTTTTCGCCGCGCTGATCGTCGTGTGCATGGGCCTG
ATGGGAATTTTCCTCTTCTTCACCATCGGCATCATCAAGATCCACGACAA
GGAGGGGAGCCTGTCTCCAATGGCGAAGACTTTCTTTCTCCACTACATGG
CAAAGTTCTTTCTGCTCGGAGACCTTACAGAGAAGGAGGCTGCGGGCGGG
GATGGAGAGGCTGGCCTGACCGGCAGGAAGCTGGCCTGGCCTGCACGGGC
CATCCTCGTGGCCCCTGCCGACGACTTGGCGAATGTCAACGAGGAAACCT
CGGCTGAGGTCTCCAAGACAACCCGCCAGCCGTCCGTGCCGCCCGCACCC
CTGGAGGTCGCTGTGTCGGCCGGCATCAGTAGCCTGACCAGCAGTGTGGA
GGAGCTGGCCAAGGCCATGAAGAACGAGCAGGAGGTGTCCGATTACACCC
TGCTGGCCAAGGTCCTGGACAGGCTGTGCCTTGTCCTGTACGTCATCAGT
ATTGCCGTGTCCGTGCCCATGGTCATGTATCTGAGCAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000381 | genome | Sc0000381:112971..120590 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96258_cuf2 |
| Biotype | protein_coding |
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