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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96248_cuf3 >transcript:BL96248_cuf3-protein ID=transcript:BL96248_cuf3-protein|Name=transcript:BL96248_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=134bp
MMHHWGLTIDIVTTNIMIIAVGLAVDYATHICHTFLIVSGTRQERSQLAL
ASMGPAVFNGVFSTFLAIALLSTSEHYVFITFFKGVFPGTFVRMSTRTSV
PPGHTELAGPGSLRHRRGTGDGTDRYRIHREGTV Run BLAST on NCBI mRNA from alignment at Sc0000051:1451117..1454964+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96248_cuf3 ID=transcript:BL96248_cuf3|Name=transcript:BL96248_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3848bp|location=Sequence derived from alignment at Sc0000051:1451117..1454964+ (Branchiostoma lanceolatum)
TTCAATGCAATACGACTTACTTTATGCATGCAACCTATTGCAAACGTATA
CACATGCTCATACGCTGATAGGTGGACGTAGGCGGGATGATGCACCACTG
GGGCCTCACCATTGACATAGTCACCACAAACATCATGATCATCGCCGTCG
GTCTGGCTGTGGACTACGCCACGCATATCTGCCACACATTTCTAATTGTC
AGCGGAACAAGGCAGGGTAGGGGATGTCTGTTGTTCTTTTTACTCAATTA
TCAAGGCGTAAGCAGGTCATTCCAGAGGTTACAGCTTCTACTTCCGTTAA
CAATGAAAAGTCATAATGACCAAACCTAGAAACGTAAGTTCGCACAAATT
GATATCTAACATCTTGCGACATCTTGTTTTTTGTCGGTTACACTGATATA
GAAATGTGTCAGCCCTTACAAATCATTAAAGGCAAGGGTGTATCATAACA
GAATTTGAAGCATTTAACAGAATCAAAGATTGACAACGAAAAATGACAAC
ATTCCACTTTAAATGGAATTAAAAACGTTAGTGCTGCAGGAAAGAAGAGA
CAACATTCTTACTGTCGTAATTCTTTTCAGTGAGCTTCACTCTAAGATAG
TGACTAGACACTGTGTGAGATCCCCTTGCTGAAAAATAGACCTAAACATA
TATATATTTCTTGGTCTTGATTTTAATTTTTCAGAAAGATCTCAGTTGGC
TCTAGCTAGTATGGGACCAGCAGTCTTCAACGGAGTCTTCAGTACGTTTC
TTGCCATCGCGTTACTGTCGACATCAGAGCACTACGTCTTTATCACTTTC
TTCAAGGTAAAATTGCTTCCTTTTTTAGTTGTTGTTATTGTAACAAGAAT
AGCAAAAATAAAACCAGGAAACAACAGTTTAACCCTCAAACACCTGAACC
CCTTTTTGCGACTTAAATGACTGAACGGGGTAAAAAATGACCCAAAGATG
TTTTGTTCAGTAAAATCTCCCTTTTCCCTTTTCTCGCTGATTGTTATCCG
TACATTGCTTCATCAATGTAAGAGGAATGTTTTGACATGTTTAGGTATGA
AAAATTCCCGTTCATTATCATAATTTATGCAAAAAAGATCAGAAGGACCA
CGTTTTGAACTATCCCTATTTAGACAGGGAGGGGATTTTTTAAGCCCACG
CCAAATTTCATGTTGCATAGCTCCTGAACGGCTTACGCTAGAGCCACCAA
ATTTGGTGACGTTTCATAAAATGTTCTTAACGAAGATTACAGATTAATAA
AGTAAGTTCATCGTTTTTCGTGTTGCCATGACAACAGATTTTTTGGCAAG
CATGTTTCACAAAATCTGCTAATTTTAGTTCAAACGATGACGTTTCGAGG
CTTTGTTGGTACACTACATTTGCTTTCTTACATTGTTATCATCTTATGTA
ATCTAATGTAACTTTCCTGATTTAACATTGATATATTTTGCTGATTTGAT
GACGTCCTTGGTCAAAATCCAAGATGGCGGATGGAATTACATAAGATTAC
GTCATGATGACATCATCTTACGTCGTAATGGAACAAAATTAGTTATGGTA
ATATCAATTTACATGTGCATCATCCTCTGAAAATTTGGTGGTCATACAAT
AAGTAGTTTAGGAGTTACAGAGGACAGGTCTCAAAAGCAGCACATAATTT
TTTCTGGGGTCAAAAATGACCCCAGTGGAATCACTACAGACTTTCCTCTA
TAATGTCAACAGTATTGCGTAATCTTGTTTGAAAATTGTGAGAGGTTAGA
ATAGATGTCTACTGACAAAGTCACGGAAGGAATTTTTTCCGATCAAACAT
GTTCAAAGGGCACATCAAAATCCACGCCTGGGGTCAAAAATGACCCCACT
CGGATGTTCGATGATTAAAAGAAAGTAGGATAATACTAGTCTCTGGTTCC
TGGGAATATTACATACCTTTTGTTATCAGGTAAACAAATTTGACCTTTAT
TTGACATTTTCATAGGTCATATAAAGCTCCTTTTACGTTATAAAGTCGCT
AATCCACCTAGCCATAGTGCAGTTGGTTAGAAGCTCATAGATTATGCTGT
AAGGCAACATTGAGTTGATTATATGGATGGTATCTACGCGAAATATATTA
GTATACTAATAAAGGCTAGGGAATAAAAATGTCACGTATTATATCAACTA
TTATTGTTTCGTCTTTCTTTTCAGGCGCTTTTTTTCAAATTTGATACATA
ATTTGATATTTGCAACTGATTAATCAAATATATTGGCCACAATACTCAAG
ACGAAAACCGCTCATAATGCACGGTCCATCGTCAAAGCAACAGATGCCAA
ATATCATTCCTGCCCGGGCATTTGTTGTATGAAATACTTTCCATGAGAGT
TGTACCCGAATTATACCCCCTTCTTACTTGGCGTGCAATTCTTGGTAGTA
TGGGAGACATCATTGACGCGAACAAAGGACTTTCTAGATTTGAACAAACA
ATACTTCTGATCGGAAAACAAATGACGTTGATTCAAGCAAAAGATCCTAT
TGATTTGAGCAAATATATTTTTGATTCGAGCAAAGCAACCTATTGATTCA
AATAAAGATTTATTTAGAGATCAATTTAGATTTAAGAGTACCTTAATTCG
TACAAAATATCCTCTTCATTTGAACAAAAATCATACTGTTAATGCAGAAA
TGTTCACGGGGATTTCATTTCGCGGTAGGGAAACATTGAGTGTTCGCGGT
AAAGGGTTAACCGCGAAAACCGCGAACGTAAAATCACCGCGAATATTTCT
GCATTTACAGTAAGCTTATTGATTCGAACAGAAAATCATATATCTAGGAT
CATTTCATCCATAGCTAGCATATGTTCAGCAGTGTTGTCAAAACTACAAT
CGGGTACTTCCTTTTTTACAGTTACAAGAATATTCCTCAAACAGTGACTT
AAAAAGAAAGGTAGTGAAATACATACCTCCAAATTTTCGACGTCTAGTAA
CGTCTTGTTCACGGAGTGACCTAGTCTCGCGAGAACACGAGAAGGTATGC
GCCATCCGAGAAATTCCTTTTTACCGTGTTACTCCTTTTTTTTACCGTTT
CAGGTGTTTTTCCTGGTACTTTTGTTCGGATGTCTACACGGACTAGTGTT
CCTCCCGGTCATACTGAGCTGGCTGGGCCCGGCTCCTTACGTCACCGCCG
CGGTACAGGAGACGGGACAGACCGATACAGGATACATCGAGAAGGCACAG
TCTAAAGGCTTCGCCAACCCGGGCCTGGAAATGGACGAGGTAAGTTGATG
GCTGCAAATTTTTTTGTTTTGGTGACGCCCCAGGGGGGAGGCCTTAGTGC
GATTGATTTGGAAATATTCTAGGAATTGCACGAACGCATTCCCTAGGGAT
TTCGTTGATGGCTACGCCTTGCGGGACATGATCTTTGCACGTACATGTAT
CAGGAAAGACCTACACTGCTTTGGCAATAAAGGCACTTGCTTTTATACAA
GTATTTTTTTTTGTGATTTCCTACCATGACAAAGAATATGAGCTTACCCA
TGGCTGATTGTAGTAGGCATCCTTCCATCTTTTCAGATGATGGTAGCACT
CTGGATTCGGCAGCTTATCATGTGACTCTGAAGTCCAATCCTGGCGTATT
GCCTTTTATCAAGTAATGAACAATATATTGATGGGCCAATATTCCTTATG
CTCTTTCCGTTACAAAGACGAATACTGCATTGAAAATTTGATACGTCAAA
CTTAGTCTTCCGGAGGAAATTAAAGTTATACTTTGCTCTAGAATGAATCC
AATCCAGTTTGTACATTTGCTAAACTGTTTGTACTTGTACTTTTGTACTT
TCTGTACTCTTAGAGTCAATATAACCATATCCTTAGGCTTTATACACC Coding sequence (CDS) from alignment at Sc0000051:1451117..1454964+ >transcript:BL96248_cuf3 ID=transcript:BL96248_cuf3|Name=transcript:BL96248_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=1215bp|location=Sequence derived from alignment at Sc0000051:1451117..1454964+ (Branchiostoma lanceolatum)
ATGATGCACCACTGGGGCCTCACCATTGACATAGTCACCACAAACATCAT
GATCATCGCCGTCGGTCTGGCTGTGGACTACGCCACGCATATCTGCCACA
CATTTCTAATTGTCAGCGGAACAAGGCAGGAAAGATCTCAGTTGGCTCTA
GCTAGTATGGGACCAGCAGTCTTCAACGGAGTCTTCAGTACGTTTCTTGC
CATCGCGTTACTGTCGACATCAGAGCACTACGTCTTTATCACTTTCTTCA
AGGGTGTTTTTCCTGGTACTTTTGTTCGGATGTCTACACGGACTAGTGTT
CCTCCCGGTCATACTGAGCTGGCTGGGCCCGGCTCCTTACGTCACCGCCG
CGGTACAGGAGACGGGACAGACCGATACAGGATACATCGAGAAGGCACAG
TCTAAATGATGCACCACTGGGGCCTCACCATTGACATAGTCACCACAAAC
ATCATGATCATCGCCGTCGGTCTGGCTGTGGACTACGCCACGCATATCTG
CCACACATTTCTAATTGTCAGCGGAACAAGGCAGGAAAGATCTCAGTTGG
CTCTAGCTAGTATGGGACCAGCAGTCTTCAACGGAGTCTTCAGTACGTTT
CTTGCCATCGCGTTACTGTCGACATCAGAGCACTACGTCTTTATCACTTT
CTTCAAGGGTGTTTTTCCTGGTACTTTTGTTCGGATGTCTACACGGACTA
GTGTTCCTCCCGGTCATACTGAGCTGGCTGGGCCCGGCTCCTTACGTCAC
CGCCGCGGTACAGGAGACGGGACAGACCGATACAGGATACATCGAGAAGG
CACAGTCTAAATGATGCACCACTGGGGCCTCACCATTGACATAGTCACCA
CAAACATCATGATCATCGCCGTCGGTCTGGCTGTGGACTACGCCACGCAT
ATCTGCCACACATTTCTAATTGTCAGCGGAACAAGGCAGGAAAGATCTCA
GTTGGCTCTAGCTAGTATGGGACCAGCAGTCTTCAACGGAGTCTTCAGTA
CGTTTCTTGCCATCGCGTTACTGTCGACATCAGAGCACTACGTCTTTATC
ACTTTCTTCAAGGGTGTTTTTCCTGGTACTTTTGTTCGGATGTCTACACG
GACTAGTGTTCCTCCCGGTCATACTGAGCTGGCTGGGCCCGGCTCCTTAC
GTCACCGCCGCGGTACAGGAGACGGGACAGACCGATACAGGATACATCGA
GAAGGCACAGTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000051 | genome | Sc0000051:1451117..1454964 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96248_cuf3 |
| Biotype | protein_coding |
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