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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96241_cuf5 >transcript:BL96241_cuf5-protein ID=transcript:BL96241_cuf5-protein|Name=transcript:BL96241_cuf5|organism=Branchiostoma lanceolatum|type=polypeptide|length=316bp
GSHGSNSTSADSGSKSQKSVKSTQSSSEASASTGLCHSNGTWAKFQDATY
CPSGDTKMSWTEADQFCRDLSAHLVSILSKDEQDFLYDLIRPPCGNSQSG
SQTADSNSAGSGSVNKRSASNGQCSATASVINEKFTTGISCPGDQSSCSW
SDGSPMYYENWDKNEPRPSGNRRCGILSKENWGTSSCSAHRRFFCKRQPD
CITMPAPCDEHASYDKRANGLCFCTCNQGYSGDGVSCQDIDECEEETDDC
DPNASCTNTDGSFTCTCNTGYDGDGTTCTDINECTSDTHNCHENADCTNT
KGSFSCACNIGYEGTG Run BLAST on NCBI mRNA from alignment at Sc0000158:206574..210424- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96241_cuf5 ID=transcript:BL96241_cuf5|Name=transcript:BL96241_cuf5|organism=Branchiostoma lanceolatum|type=mRNA|length=3851bp|location=Sequence derived from alignment at Sc0000158:206574..210424- (Branchiostoma lanceolatum)
CCGGAAGCCATGGATCCAACAGCACTTCGGCAGATTCTGGTTCCAAGTCC
CAGAAAAGCGTTAAAAGTACTCAAAGCTCATCGGAAGCTTCAGCATCCAC
TGGTATATGTAGCGTTTTGTGTATATGCAGTGAATGTATTAGTTTTCTTT
GCTAGTGCGTGAGCATTCATAGATATATACGATATAAGATGCTCGTTGTG
AAATAGTAAATGTACTGTGGAGCAGTACTTGTCAACAGCATGTAATATAA
TTTCGTGTACCAATCTCAGCCCAACCCTAAAAGGGACAGTATAAAAGAAA
TCCGCAGGTCCTGGGTTCGTAGCATACCGCATGAAATGTTACCTTAGGCT
AGCTAGTTGATGGTGCTTTCGTATGCACGGATAGCCATGCATTGGGCCAC
CTAAGTGCAACCTTTCTAGAAGCTAAACCTGTACAAGTTTGGCTGCTAAC
AGTTTGATATACTAAACACTGCAAACAGGTAGGGCTGCTAGTGGTTTTGG
CTGCTAACGATAGGGCTTCTAATGGTTGACGCAATATACACGAGGGCTTA
ATCTTCGTGATCATGCTTGGCTTTGGGATTTCGCTCCGTCAATCAAAACA
ATAACGATAGCTCTACAATAATTGTTTTATTTTGTTTTATTTTCAAACAC
ACCTAGGTCTCTGTCACAGCAATGGTACTTGGGCTAAGTTTCAAGATGCG
ACGTATTGCCCGTCTGGAGATACGAAGATGTCATGGACAGAGGCCGACCA
ATTCTGTCGTGATTTGTCGGCACACCTTGTGAGCATACTGTCCAAGGACG
AACAGGACTTTCTCTACGGTGAGGAAAACCATCATCTGGAATATAGTAGA
ATCTATATATGTCTTAGAATATCGACGTTTTTAGAATATGTAACATTGAC
TTTTAGGTCGATGGAAGTTCAACATCCAGGTAATAAGATACGCCAAATAA
CAGTTACTCGTTACAGGCAACTGAATAAAGTGTTTGAAACAGTTCGACGT
TTCAGTCAGCATCCGCTGTCTTTTGTATTTGACTAAAAGGAAGAGGTGGA
GAACCAGGTTTAAAACTTTGAATCAATATGTTAACGAAGTGAAGACAATT
TTAGGATGGTTCAAAAGAGTAACTGTCATTTGAAGCACTGACTTTAAAGA
AGCCTGTACATGTGTCACTTGAATACACCATGCTGTCAAAATGAGTCTCA
AACTTAGGTGCTTTGCAGCGCGTAGTTTCCTTCATTGATGCTGATGCCCG
TACAGATTTGATCCGGCCTCCGTGCGGCAACAGTCAGTCAGGAAGTCAGA
CAGCCGACAGCAACTCTGCAGGGTCGGGTTCTGTCAACAAACGGTCTGCC
AGTAACGGCCAATGCTCCGCGACTGCGTCAGTAATAAGTATGTATGAACG
TTTGATTCTAAGCTGTTCAATCAAATTCAAACAATCCACGATGTTCTTTT
AACTCACAATTTTCTTAACAGCATTTAGTTAAATGGTTTCAATATTTTTT
ATTCAATAAGGATATTGAGTACTGTCACTCTCTCTGTATGTATACTTAGT
AATTGAAAACCATTACTATAGGCATATTTTTATATATTTCAGATGAAAAG
TTCACAACAGGCATATCATGTCCCGGGGACCAATCATCGTGTTCCTGGAG
TGACGGATCACCAATGGTGAGCTGACCTGATAATTCTATTATCCTTTCTG
ACATTATCGTCCGACCAATGTATTATAGGTGTACTTTCTTTTGAAGTTTT
ACATTGATACCTTAAACTGTTTGAAGATTTGGCCTGTAACCTTCACCACC
TAGGAAAAGAGGAATTATTTCTTGCAGCAATCATCTGCTTGACTGACCAC
TGAATTTCCGTGATAATGTAATTGATCTTTATGGAAATATATTGTGATTA
TGGCTCAGACAACAAGACGTTCTCGGGGTCCATACAATAACAATTCAGGT
CAATGAAATCCAATAAATAGATATGAAATGCTTTTTTATTGAGCTCAAAA
ACATAAGTACAGCAGGGACAAAGAGGTGACGCATTCCAGTTAACAAAACT
TATTTTAACGCCAGTACAAATTGCAAAGGCAGAAATAAATGTAAAGGCCA
AATACAAGATTTCTATGATGCTAACAGAAGTTAACCAATGTACAGAAAGA
TGGGAACTTTTACAAGCGCATGTCTGGGCCTAATCAAAGGACACATTACA
AGAGACAAACTAACTACAGGTAAAACAAGTTTGAAAAGCTATTTGCTTCT
AATTACTTGCTTCTGATTTTAGTACTACGAGAACTGGGACAAGAACGAAC
CGCGTCCATCCGGAAATAGACGATGCGGAATTCTCAGTAAGGAGAATTGG
GGGACTTCCAGTTGTAGCGCACACAGGCGGTTCTTCTGCAAGAGACAACC
CGACTGCATAACGATGCCAGCCCCTTGTGACGAGCATGCGTCGTACGACA
AACGTGCTAATGGTTTATGCTTCTGTACCTGTAACCAAGGTTACTCAGGG
GATGGTGTGAGTTGTCAAGGTTCGTAAAATGCTTCTAAAGCCTCACCGAG
CTTTGCAGCCATACATTTTCAATTGCAATCTGCATAAATCATGTCGCTTT
TAATCCCTTCATTACTGCAATCCAATAACGTACCGCATTGGAGCAGCAGT
GTTTGTACTTTCCTCGGTGGCCCGTTTTCAGGTAATGTAGATTAGTTATT
AAATGATGGTAATTTTTGTATCCTTTTATGCTACTTTCAACTATACCTAT
CGGTGTTTATTTGCTTCCTATGGCTTGACATACTGAAATAGTCATACTCT
ATACTAATCTGCTATAAAACATGCTGTACGTACTTCCTAGCGGCACAAAT
CTTATCGATACTAAGAACAAAATAAATCCTATTGAGCAAAGAAAAAAGAT
ATGACAAAACATCACCCTTGTGGTTGATAGAGCCATTGTACACATCGGAG
GAGTCATGATTAAGGATGTGTATGATGGTTCTGTGCAATTACTGGGATCA
AAAGTTACAATAACCATTGTCCTGAATAAACCTTAAAAATCCGAAATGTA
CACACAACTTTGAAAAATGTATTCTAAAACTAAGCTAAGTCAAAACAGAC
GGGGTTTACCATTAGGCAGTAAATATATATATTTTTATGATATTCTGTTC
TGTGTTGATTTTTTATAAATATTTGGCATCTTTTGAGCAAGAGTTATGAA
TGTGCAAGAAAAACGTTAATATGACTTTTGGATTCTTTTGAACTTTCTCA
CCAGACATTGATGAGTGTGAGGAAGAGACAGATGACTGTGATCCCAACGC
AAGCTGCACAAACACGGACGGATCTTTCACCTGTACCTGTAACACTGGGT
ACGACGGTGATGGCACGACATGCACAGGTGCGTCTGAACAAAGTCGTATT
CTAAAATGTCTAGACGTTAGAGTTTCTTCTAATGATTGTAAATCCCTATT
CTTATCCTATACTACACACTCTTGTACTAGGTAGATTAGCCTAATGGAAC
TGTAGTTATGTACCAGTAGATACAATACTTTTTACAATGAACAATTGTTG
TGCAATAAAGGTATTATTATTCTTCTAAAATGTTTGAAATAAGAAGTTCA
TTTTCAAATATGTTGCTCATGTTAGTAAGTTCTGACTGATGATATGACAT
AGTCAACATGACCAGACCGTCATCTTTAAAAAACATGGGCCTGAAGATGG
CATTCAAAGAGCATTTGAGATATCTATCACTCTTTTTCAGATATCAACGA
GTGCACGTCAGATACACACAACTGTCATGAAAACGCAGACTGCACCAACA
CCAAGGGATCCTTCAGCTGTGCCTGTAACATCGGATATGAAGGGACCGGG
G Coding sequence (CDS) from alignment at Sc0000158:206574..210424- >transcript:BL96241_cuf5 ID=transcript:BL96241_cuf5|Name=transcript:BL96241_cuf5|organism=Branchiostoma lanceolatum|type=CDS|length=6636bp|location=Sequence derived from alignment at Sc0000158:206574..210424- (Branchiostoma lanceolatum)
GGAAGCCATGGATCCAACAGCACTTCGGCAGATTCTGGTTCCAAGTCCCA
GAAAAGCGTTAAAAGTACTCAAAGCTCATCGGAAGCTTCAGCATCCACTG
GTCTCTGTCACAGCAATGGTACTTGGGCTAAGTTTCAAGATGCGACGTAT
TGCCCGTCTGGAGATACGAAGATGTCATGGACAGAGGCCGACCAATTCTG
TCGTGATTTGTCGGCACACCTTGTGAGCATACTGTCCAAGGACGAACAGG
ACTTTCTCTACGATTTGATCCGGCCTCCGTGCGGCAACAGTCAGTCAGGA
AGTCAGACAGCCGACAGCAACTCTGCAGGGTCGGGTTCTGTCAACAAACG
GTCTGCCAGTAACGGCCAATGCTCCGCGACTGCGTCAGTAATAAATGAAA
AGTTCACAACAGGCATATCATGTCCCGGGGACCAATCATCGTGTTCCTGG
AGTGACGGATCACCAATGTACTACGAGAACTGGGACAAGAACGAACCGCG
TCCATCCGGAAATAGACGATGCGGAATTCTCAGTAAGGAGAATTGGGGGA
CTTCCAGTTGTAGCGCACACAGGCGGTTCTTCTGCAAGAGACAACCCGAC
TGCATAACGATGCCAGCCCCTTGTGACGAGCATGCGTCGTACGACAAACG
TGCTAATGGTTTATGCTTCTGTACCTGTAACCAAGGTTACTCAGGGGATG
GTGTGAGTTGTCAAGACATTGATGAGTGTGAGGAAGAGACAGATGACTGT
GATCCCAACGCAAGCTGCACAAACACGGACGGATCTTTCACCTGTACCTG
TAACACTGGGTACGACGGTGATGGCACGACATGCACAGATATCAACGAGT
GCACGTCAGATACACACAACTGTCATGAAAACGCAGACTGCACCAACACC
AAGGGATCCTTCAGCTGTGCCTGTAACATCGGATATGAAGGGACCGGGGG
AAGCCATGGATCCAACAGCACTTCGGCAGATTCTGGTTCCAAGTCCCAGA
AAAGCGTTAAAAGTACTCAAAGCTCATCGGAAGCTTCAGCATCCACTGGT
CTCTGTCACAGCAATGGTACTTGGGCTAAGTTTCAAGATGCGACGTATTG
CCCGTCTGGAGATACGAAGATGTCATGGACAGAGGCCGACCAATTCTGTC
GTGATTTGTCGGCACACCTTGTGAGCATACTGTCCAAGGACGAACAGGAC
TTTCTCTACGATTTGATCCGGCCTCCGTGCGGCAACAGTCAGTCAGGAAG
TCAGACAGCCGACAGCAACTCTGCAGGGTCGGGTTCTGTCAACAAACGGT
CTGCCAGTAACGGCCAATGCTCCGCGACTGCGTCAGTAATAAATGAAAAG
TTCACAACAGGCATATCATGTCCCGGGGACCAATCATCGTGTTCCTGGAG
TGACGGATCACCAATGTACTACGAGAACTGGGACAAGAACGAACCGCGTC
CATCCGGAAATAGACGATGCGGAATTCTCAGTAAGGAGAATTGGGGGACT
TCCAGTTGTAGCGCACACAGGCGGTTCTTCTGCAAGAGACAACCCGACTG
CATAACGATGCCAGCCCCTTGTGACGAGCATGCGTCGTACGACAAACGTG
CTAATGGTTTATGCTTCTGTACCTGTAACCAAGGTTACTCAGGGGATGGT
GTGAGTTGTCAAGACATTGATGAGTGTGAGGAAGAGACAGATGACTGTGA
TCCCAACGCAAGCTGCACAAACACGGACGGATCTTTCACCTGTACCTGTA
ACACTGGGTACGACGGTGATGGCACGACATGCACAGATATCAACGAGTGC
ACGTCAGATACACACAACTGTCATGAAAACGCAGACTGCACCAACACCAA
GGGATCCTTCAGCTGTGCCTGTAACATCGGATATGAAGGGACCGGGGGAA
GCCATGGATCCAACAGCACTTCGGCAGATTCTGGTTCCAAGTCCCAGAAA
AGCGTTAAAAGTACTCAAAGCTCATCGGAAGCTTCAGCATCCACTGGTCT
CTGTCACAGCAATGGTACTTGGGCTAAGTTTCAAGATGCGACGTATTGCC
CGTCTGGAGATACGAAGATGTCATGGACAGAGGCCGACCAATTCTGTCGT
GATTTGTCGGCACACCTTGTGAGCATACTGTCCAAGGACGAACAGGACTT
TCTCTACGATTTGATCCGGCCTCCGTGCGGCAACAGTCAGTCAGGAAGTC
AGACAGCCGACAGCAACTCTGCAGGGTCGGGTTCTGTCAACAAACGGTCT
GCCAGTAACGGCCAATGCTCCGCGACTGCGTCAGTAATAAATGAAAAGTT
CACAACAGGCATATCATGTCCCGGGGACCAATCATCGTGTTCCTGGAGTG
ACGGATCACCAATGTACTACGAGAACTGGGACAAGAACGAACCGCGTCCA
TCCGGAAATAGACGATGCGGAATTCTCAGTAAGGAGAATTGGGGGACTTC
CAGTTGTAGCGCACACAGGCGGTTCTTCTGCAAGAGACAACCCGACTGCA
TAACGATGCCAGCCCCTTGTGACGAGCATGCGTCGTACGACAAACGTGCT
AATGGTTTATGCTTCTGTACCTGTAACCAAGGTTACTCAGGGGATGGTGT
GAGTTGTCAAGACATTGATGAGTGTGAGGAAGAGACAGATGACTGTGATC
CCAACGCAAGCTGCACAAACACGGACGGATCTTTCACCTGTACCTGTAAC
ACTGGGTACGACGGTGATGGCACGACATGCACAGATATCAACGAGTGCAC
GTCAGATACACACAACTGTCATGAAAACGCAGACTGCACCAACACCAAGG
GATCCTTCAGCTGTGCCTGTAACATCGGATATGAAGGGACCGGGGGAAGC
CATGGATCCAACAGCACTTCGGCAGATTCTGGTTCCAAGTCCCAGAAAAG
CGTTAAAAGTACTCAAAGCTCATCGGAAGCTTCAGCATCCACTGGTCTCT
GTCACAGCAATGGTACTTGGGCTAAGTTTCAAGATGCGACGTATTGCCCG
TCTGGAGATACGAAGATGTCATGGACAGAGGCCGACCAATTCTGTCGTGA
TTTGTCGGCACACCTTGTGAGCATACTGTCCAAGGACGAACAGGACTTTC
TCTACGATTTGATCCGGCCTCCGTGCGGCAACAGTCAGTCAGGAAGTCAG
ACAGCCGACAGCAACTCTGCAGGGTCGGGTTCTGTCAACAAACGGTCTGC
CAGTAACGGCCAATGCTCCGCGACTGCGTCAGTAATAAATGAAAAGTTCA
CAACAGGCATATCATGTCCCGGGGACCAATCATCGTGTTCCTGGAGTGAC
GGATCACCAATGTACTACGAGAACTGGGACAAGAACGAACCGCGTCCATC
CGGAAATAGACGATGCGGAATTCTCAGTAAGGAGAATTGGGGGACTTCCA
GTTGTAGCGCACACAGGCGGTTCTTCTGCAAGAGACAACCCGACTGCATA
ACGATGCCAGCCCCTTGTGACGAGCATGCGTCGTACGACAAACGTGCTAA
TGGTTTATGCTTCTGTACCTGTAACCAAGGTTACTCAGGGGATGGTGTGA
GTTGTCAAGACATTGATGAGTGTGAGGAAGAGACAGATGACTGTGATCCC
AACGCAAGCTGCACAAACACGGACGGATCTTTCACCTGTACCTGTAACAC
TGGGTACGACGGTGATGGCACGACATGCACAGATATCAACGAGTGCACGT
CAGATACACACAACTGTCATGAAAACGCAGACTGCACCAACACCAAGGGA
TCCTTCAGCTGTGCCTGTAACATCGGATATGAAGGGACCGGGGGAAGCCA
TGGATCCAACAGCACTTCGGCAGATTCTGGTTCCAAGTCCCAGAAAAGCG
TTAAAAGTACTCAAAGCTCATCGGAAGCTTCAGCATCCACTGGTCTCTGT
CACAGCAATGGTACTTGGGCTAAGTTTCAAGATGCGACGTATTGCCCGTC
TGGAGATACGAAGATGTCATGGACAGAGGCCGACCAATTCTGTCGTGATT
TGTCGGCACACCTTGTGAGCATACTGTCCAAGGACGAACAGGACTTTCTC
TACGATTTGATCCGGCCTCCGTGCGGCAACAGTCAGTCAGGAAGTCAGAC
AGCCGACAGCAACTCTGCAGGGTCGGGTTCTGTCAACAAACGGTCTGCCA
GTAACGGCCAATGCTCCGCGACTGCGTCAGTAATAAATGAAAAGTTCACA
ACAGGCATATCATGTCCCGGGGACCAATCATCGTGTTCCTGGAGTGACGG
ATCACCAATGTACTACGAGAACTGGGACAAGAACGAACCGCGTCCATCCG
GAAATAGACGATGCGGAATTCTCAGTAAGGAGAATTGGGGGACTTCCAGT
TGTAGCGCACACAGGCGGTTCTTCTGCAAGAGACAACCCGACTGCATAAC
GATGCCAGCCCCTTGTGACGAGCATGCGTCGTACGACAAACGTGCTAATG
GTTTATGCTTCTGTACCTGTAACCAAGGTTACTCAGGGGATGGTGTGAGT
TGTCAAGACATTGATGAGTGTGAGGAAGAGACAGATGACTGTGATCCCAA
CGCAAGCTGCACAAACACGGACGGATCTTTCACCTGTACCTGTAACACTG
GGTACGACGGTGATGGCACGACATGCACAGATATCAACGAGTGCACGTCA
GATACACACAACTGTCATGAAAACGCAGACTGCACCAACACCAAGGGATC
CTTCAGCTGTGCCTGTAACATCGGATATGAAGGGACCGGGGGAAGCCATG
GATCCAACAGCACTTCGGCAGATTCTGGTTCCAAGTCCCAGAAAAGCGTT
AAAAGTACTCAAAGCTCATCGGAAGCTTCAGCATCCACTGGTCTCTGTCA
CAGCAATGGTACTTGGGCTAAGTTTCAAGATGCGACGTATTGCCCGTCTG
GAGATACGAAGATGTCATGGACAGAGGCCGACCAATTCTGTCGTGATTTG
TCGGCACACCTTGTGAGCATACTGTCCAAGGACGAACAGGACTTTCTCTA
CGATTTGATCCGGCCTCCGTGCGGCAACAGTCAGTCAGGAAGTCAGACAG
CCGACAGCAACTCTGCAGGGTCGGGTTCTGTCAACAAACGGTCTGCCAGT
AACGGCCAATGCTCCGCGACTGCGTCAGTAATAAATGAAAAGTTCACAAC
AGGCATATCATGTCCCGGGGACCAATCATCGTGTTCCTGGAGTGACGGAT
CACCAATGTACTACGAGAACTGGGACAAGAACGAACCGCGTCCATCCGGA
AATAGACGATGCGGAATTCTCAGTAAGGAGAATTGGGGGACTTCCAGTTG
TAGCGCACACAGGCGGTTCTTCTGCAAGAGACAACCCGACTGCATAACGA
TGCCAGCCCCTTGTGACGAGCATGCGTCGTACGACAAACGTGCTAATGGT
TTATGCTTCTGTACCTGTAACCAAGGTTACTCAGGGGATGGTGTGAGTTG
TCAAGACATTGATGAGTGTGAGGAAGAGACAGATGACTGTGATCCCAACG
CAAGCTGCACAAACACGGACGGATCTTTCACCTGTACCTGTAACACTGGG
TACGACGGTGATGGCACGACATGCACAGATATCAACGAGTGCACGTCAGA
TACACACAACTGTCATGAAAACGCAGACTGCACCAACACCAAGGGATCCT
TCAGCTGTGCCTGTAACATCGGATATGAAGGGACCGGGGGAAGCCATGGA
TCCAACAGCACTTCGGCAGATTCTGGTTCCAAGTCCCAGAAAAGCGTTAA
AAGTACTCAAAGCTCATCGGAAGCTTCAGCATCCACTGGTCTCTGTCACA
GCAATGGTACTTGGGCTAAGTTTCAAGATGCGACGTATTGCCCGTCTGGA
GATACGAAGATGTCATGGACAGAGGCCGACCAATTCTGTCGTGATTTGTC
GGCACACCTTGTGAGCATACTGTCCAAGGACGAACAGGACTTTCTCTACG
ATTTGATCCGGCCTCCGTGCGGCAACAGTCAGTCAGGAAGTCAGACAGCC
GACAGCAACTCTGCAGGGTCGGGTTCTGTCAACAAACGGTCTGCCAGTAA
CGGCCAATGCTCCGCGACTGCGTCAGTAATAAATGAAAAGTTCACAACAG
GCATATCATGTCCCGGGGACCAATCATCGTGTTCCTGGAGTGACGGATCA
CCAATGTACTACGAGAACTGGGACAAGAACGAACCGCGTCCATCCGGAAA
TAGACGATGCGGAATTCTCAGTAAGGAGAATTGGGGGACTTCCAGTTGTA
GCGCACACAGGCGGTTCTTCTGCAAGAGACAACCCGACTGCATAACGATG
CCAGCCCCTTGTGACGAGCATGCGTCGTACGACAAACGTGCTAATGGTTT
ATGCTTCTGTACCTGTAACCAAGGTTACTCAGGGGATGGTGTGAGTTGTC
AAGACATTGATGAGTGTGAGGAAGAGACAGATGACTGTGATCCCAACGCA
AGCTGCACAAACACGGACGGATCTTTCACCTGTACCTGTAACACTGGGTA
CGACGGTGATGGCACGACATGCACAGATATCAACGAGTGCACGTCAGATA
CACACAACTGTCATGAAAACGCAGACTGCACCAACACCAAGGGATCCTTC
AGCTGTGCCTGTAACATCGGATATGAAGGGACCGGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000158 | genome | Sc0000158:206574..210424 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96241_cuf5 |
| Biotype | protein_coding |
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