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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96239_cuf3 >transcript:BL96239_cuf3-protein ID=transcript:BL96239_cuf3-protein|Name=transcript:BL96239_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=163bp
GYSGDGVACSDVNECQSNLDNCHADAFCTNTVGSFDCTCKEGYDGDGVTC
EDINECVLNIHDCHDDANCTNTKGSFSCLCNSGYSGNGTYCSENVYGTNA
PFIASSPAPESPSPSPHYLWTLLVAVGGVSFAVWIIVKKKIQSQAQAPAG
PRQAWADDGVDLI Run BLAST on NCBI mRNA from alignment at Sc0000158:187684..195272- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96239_cuf3 ID=transcript:BL96239_cuf3|Name=transcript:BL96239_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=7589bp|location=Sequence derived from alignment at Sc0000158:187684..195272- (Branchiostoma lanceolatum)
CGGGTACTCAGGGGACGGCGTGGCTTGCTCAGGTACTTCAATATATAATA
TCTCACCGCTGATAAATGTAAACTGGCTCAAAGTTGTAGAACCACGTAGC
ATCGATACACTACTACATGATTAAATCTATCAGCAGAGACCAACGTAAAA
AAAGAAGTTTCGCAACGTCTATATTGTAGACAGTACAGTTGCAAATCTAT
GAATGCCCTTTTTGTTTTTTATTCCTCAGATATTGATGAATGTGACAGAA
GAACCGATGACTGCCATGCCGACGCAACCTGCACCAACACTGTTGGCTCC
TTTTCCTGTGCGTGTAACACCGGGTACTCCGGGGACGGCAAGACTTGCGC
AGGTACAGTTTTGTTAGTAGACATAAAGCACCTTTTGTTTTCTCCGTTGG
TAATTCCATCGACAGATGTATGGAAGGGACACGTATGGGTCATTTATATG
TGCGTGTAACAACGGATACCGTAGCTTTAGGACAGAGTGAATTACTCAGG
TACATTTAATGATGGACAGTCTCTTTAATGGACACAGAGGTACTGTGAAT
GAGTGTATGTGTGTGTGTGTGTGTGTGGGTGTGAAATATTTGTGGCGTAA
TATTTGTCACATCCATATACATTGTATATTTTACAAACATAATTGTATTA
GAATGATCATGTTGAAGATTGGCAAACGCGTGTTTATTTTTGCAGATATC
AACGAATGCACCGATGATACCGATAACTGTCATTCCGACGCCACCTGTAC
CAACAACAAGGGGTCCTTCAGCTGTGCCTGTAACATCGGGTACTCAGGAG
ACGGTGTGGCTTGCTCAGGTACTTCAATATATTATATCTCACCGCTGATA
GATTTAAACTGGCACAAAGTTGTAGAACCGCGTAGCATCGATGCACTGTT
ACATGATTGAATCTATTAGTAGAGACCAACGTAAAAAAAGAAGTTTTGTA
ACGTCTATAGTGTAGATAGTACAGCAGCAAATGTATGAATTCCCTTTTTG
TTTTTTGTACCTCAGATATTGATGAATGTGACGAAGGAAGCGATACCTGC
CATTCCGACGCAACCTGCACCAACAGTGCTGGCTCCTATTCCTGTGCGTG
TAACACCGGGTACTCCGGGGACGGCAGGACTTGCGCAGGTACAGTTTTGT
TAGTAGTTATAAAGTATAAATTGTTTTCTCCGTTGGTGATTCCATTGACA
GATGTATGGAAGGGACAAGTATGTGTTCTTCATATGTGCGTGTAACAACG
GATACCGTAGCTTTCGGGACAGACTTGCTCAGGTACATTAATGACGGACA
GTCTCTTAAAAGGAGAGAGAGATACTGTGAATGAGTGTATGTGTATGTGT
GTGTACTTTGTGGCGTAATATATGTCACATCCGAATACATCGTATAACTT
ACAATAATGATTGTGTTGGAGTGATAATGTTGATGATAGGCCACCTCATG
TTTACTTTTGCAGATATCAACGAATGCGCCCAGGATACCCATAACTGTCA
TTCCGACGCCACCTGTACCAACAACAAGGGGTCCTTCAGCTGTGCCTGTA
ACACCGGGTACTCAGGAGACGGTGTGGCTTGCTCAGGTACTTCAATATAT
TGTATCTCACCGCTGATGAATTTAAACTGGCACAAAGTTGTAGAACCGCG
TAACAGCGATGCACTATTACATGCTTAAATCTATTAGCAGAGACCGACGT
AAAAAAAAAAGTTTTGTAACACCTATAATGTAGATAGTACAGTTGCAAAT
CTATAAATTCCCTTTTTGTTTTTTGTTCCTCAGATATTGATGAATGTAAC
ATGAGAACCGATGACTGCCATGCCGACGCAACCTGCACCAACACTGTTGG
CTCCTTTTCCTGTGCGTGTAACACCGGGTACTCCGGGGACGGCACGACTT
GCACAGGTTAACATTCATCTCGAAAATCTAAGGCACTATTAGCTTTCTAT
GTTAGTATTGGTAAGTTAACAGAATCACCTTACGAAGCATTACAAAAGCG
CACAACAACTTGCACAGAACAATTTAGTAAATCTCCGATATTTCTGTACA
GTTTGAATAGGTTATAATACCAGATGGCCACCGCCGACATTACAATCAAA
TACAAAGTATTCTAGAATCATATTCTTTAAAAGAAAAGAAATAATTTATT
TCTTTACATTTTCCGTCAGACATCAACGAGTGCGAGTCAGGTACACACAC
CTGTGATGCCAACGCAGGATGCACCAACACAAAGGGATCCTACAGCTGTG
CCTGTAACACTGGGTACCGAGGCGACGGGGAGACTTGCTTAGGTACATTT
AACGACATTCTGACTATTGCGTCTTAAGCTTGAGCAGTAATGTGTGTTAT
TTTGACCCCAACATACATATATTTTTGGTTTTACATAGGCAAATTGATTG
GCTGCTACGTCGATAACTTCTGTACCGATACTAACTAAATTTGTCCTCCA
CTCAGTACATGTCGAATGTTGATATGCAAATAAGTGGAGAGCTAGACAGA
TATGGTGGTCTACAATAATCTATGAATTCATTTGTTCTTCAGATATTGAT
GAGTGTGACGAAGGAAGCCATGCCTGCCATGCCGACGCAACCTGCACCAA
TACTGTTGGCTCCTATTCCTGTGAGTGTAACACTGGGTACTCCGGGGACG
GCACGACTTGCACAGGTACAGTTTTGCTAGTAAATATAAAGCACCTTTTA
TTTTCTTCGTTGGTAATTCCATCGACGAATGTATGGAAGGGACACGCATG
GGTCATTCATATGTGCGTGTACCAACGAATATCGTAGCTTCAGGGACAGA
GTGAATTGCTCAGGTACATTTAATGACGGGGGGGGGGGGCTAAAAGTGCC
CGCGTCAACTTTGACATCGTATAACTGGCGAACGACATATGCTAGGACTA
CCAAACTTGGTGACTTTTCCTAAAATTTAGTTGGCAACAATATCACGATA
ATAGTATAAGTTTATCATTTTTCGTGTTGCCATGGCAACGGGTTTCTGAA
AGGCATTTTATGTAAAAATCACAGATATTTTTAAACAATGATATTTCTTA
GGTTTTCTTGCTCAACCACACTAGTTTTCCTACATATATAGCATCATATG
TAATTAGATGTAATCTTATGATTTTGTATTCATAATTTATGGTAATTTGA
TGACGTTATCGGACAAAATCCAAGATGGCGGACCATTACACTATTTAAGG
TAATCAACAGGCTTTTTCGCCTTAAAAATCGTCACTACGTGGCATTTTCT
TTACCAGAAACATTTAGATTAACATTTCTAGTCTATTTTTAGTGTTTTTT
GGGGTAATAAGTGGAAAAAAAGTATTTTGAAAAATCTCAAAATGGCCGAT
CAAAGATGGCAGATCCCAAGGGGTCGATAACAACACGTGACGTCATTCAA
TGACGTCATTTTGACGTCAACGTAGTAACCGTTTTACGATATATGTCTTG
GTATACCTTAAAATCAACAATACATACTATTTTGTTTAAAACCTTTAGAT
ATTATGGGAATTCCCTATTCAGGCAATAAAATCACATCAATGACGTCATA
ATGACGTCATATTACGTCATAACGTCACCAAAACTCTAGGAATTATAAAA
CTGTACTCGAACATCACTCCCTACAAATTTGGCAATGATACATCATACCG
TTCAGAAGTTATGAGGGGGGGGGCGAATGAGCAACCCCCACCCCCCCAGT
TCCAGATATCCAAAAAAAACCTAGTCTGGATAGGGTTAAATGGAGAGAGA
GATACTGTTAATGAGTGTATATGTGTGTCTGTGTGTGTCTGTGTGTGTCT
GTGTGTGTGTGTGTGTGTGTGTAATGATTGTGGCGTAACATTTGTCAGAT
TCATATACATTATATATTTTACAAAGTTAACATAATTGTGTTAGAATGAT
AATGTTAAAGATAGGCTAACACGTGTTTATTTTTGCAGATATTAACGAAT
GCGCCGATGATACCGATAACTGTCATTCCGACGCCACCTGTACCAACAAC
AAGGGGTCATTCAGCTGTGCCTGTAACACCGGGTACTCAGGAGATGGCGT
GGCTTGCTCAGGTACTTCAATATATCATATCTCAGTGGTGATTATTGATC
AGATGTATAAAGATCTTTAAGCTGTATAGCCTCGTAACATTGCATTGTAA
AATCTAGCAGCAGACCAAGGCCAACGTGACAAAAATATGAACTTAAGATT
GTAACGTCAATAGTTTAGCCTGATATTGCAGTTTTTGAAAAAAAATACGT
AATACATTAGCCATGTGTAAAAACCAATGTTACGCAAACCAAGACTGTAA
TTCGTACTTTAAAGTACATGAAGATAATAAATCACAGTATGGATGTAGAA
ACAATGCCAACCAGAAATTTTAGTATTTGCTAACTGTGCTAAGCTCGGTG
GGGCAAAGTGTGCAAAAAAGGTGTCCATCCATTCATTCATTCATTATCAC
GTCCATCTACAGATGTCAACGAGTGCCAGAGCAACCTTGACAACTGCCAC
GCCGATGCCTTCTGCACCAACACCGTGGGGTCTTTCGATTGTACATGTAA
GGAAGGCTACGACGGAGATGGAGTCACCTGCGAAGGTACCTACATACCAA
AAACCATGACGATCCGTCAACCCATTCTTGGGTTGATTTCTTTTAAAACA
AAACCAACACAAACCGCTTCGAATAATATTTTAATTCCTGTAGTTCCAAA
GGAGCCACTATAACCTAAACCTACACATATTGTTTTGTTTTTTTTGCCCC
AGGAGCTATCTACAACTCAAAAATCACGACCATACCATCTCTAGAGTATT
AAGTATCAAAACCGGAAGTCTCACTGCAATACCGTAAACAGTCGCTACGG
TGCCTACGATCAAGACCTACTCATATACTACATACTACATATCAATACAA
TCCATCCAGGCATTCCCGAGTTATGCTGTTACACATACAAACCTATACAG
AAATAAAAACGCAACCGACATACATAACCTTCTTGGCGAATGTGATACAA
GCTCTTAAACACCGTTGCGTTTGACTTCAGTGAGAATACTTCATCCTTTG
CTTGATACCGTAAAGTAACACTAAATAAAATATAACTCAATTTTTCAGAC
ATAAACGAATGCGTCCTGAACATACACGATTGTCACGATGACGCCAACTG
TACCAACACCAAAGGGTCCTTCAGCTGTCTCTGCAACTCCGGCTACTCCG
GCAATGGGACCTACTGCAGTGGTATGTAAATAATACACGAGTTGTAGTTT
CATACGTATTGTTTCCTTTCAATTGTCGTGACGTTAAAAATGTGGCAACT
ATTGTGTCTATGGCTTTTAGTGCTAAAGTAGTGATTAGATTAGGTAAACC
CCGTCCATAAAAGAATTTAAAAAACGGTTACGAATTTTATATAAAAACAA
AGTGTCTGTCATACAAAACTAACAAAAATGATAATATGAATAAACAAACA
CCAGGATCTCACATGAATTCAAAGGAAGACGCAAATGTACCTGTATGGTA
TTTTAATGCAAATTAAAATGAAACCAAAACCTTTTTTAAGTGCCATGAGA
GTAAACCCTGGGAATATGACTCCTCTTCCCAGGCTTTACATCAGAGCACT
TAAAAAAAACATTTCAGTACAAGTATTATCGCAATTGTTAGGATAATAAT
GTAATACGGTATCTATGGAGTCCCTTAGCAATGATGTCATTGAAATTTTT
TTATGGTAAGTTATGAATTTCCTCTCAAAACAGTTTAGATATACTTTCAT
GGCAAAAGGTAGGTATGAACTAATTTGTCACATCCGCTTTATTGGTTATT
TGAGCTGAGAAACTTGATAATAATTTCTGCCTATTGAATGAAGTGTTTTT
TTTAATAAATGGTGTATCAATTAGATGAATTGTCATGCTTTTAAGTGATG
TCGGACATACATTTATCATGCTTTTCGAATGTGACATGTTTATAAATTGT
ATTGTAATAACTATTACTGTAAATTGTTTTTCTGTTTTGGTCCATATCTA
TCATTGATAATATAATTTTACAAATATGGTGGTATATTTCAAAATAGTTA
TAAAATTTTGATTCATCCGCATGTAAGTATATCATCATCATTGTTATCTT
GGTATTGTCTGTGAAATGGTTGTGTCTGTTCATTTGTTTTTTTCAACATG
AGAGTAATAAACGATTGACATGATTTATCATCAACAGAGAACGTCTACGG
CACAAATGCCCCCTTTATAGCCAGCTCACCAGGTAAGAAACTGACATCCA
CAATCAGCTAGCTTACGTATTTTGTAGAGAATTTGAATTAAACATAACTT
TTTTGTATGGTGAGTAGTACGAGGGCGAGTTAAAAAGTAATGCAAGTAGT
TTTGTAACAAACTCATTTTTATCCCCCTTTGAAGTCCGTCAAAAGCAATA
AACTTTTATCAAACACAAGACTGTTATAAAACCAGTTGTATTATTTTTTG
ACCCACCCTTGTATCAGTGTATTCTGAATTTGTACACTTTGTGTGTCTTT
CCGTTTCTCCGAAATATATACATTAAATTTAAAACTTTCCATTCCATCTC
TCTCGTTCATTCCGCGTTTCTTTGTATTTTTTGTCGTTTTATTGGTTTCA
AAGCTCCAGAGTCACCATCGCCTTCACCCCACTATCTATGGACGCTTCTC
GTAGCGGTAGGGGGAGTGTCCTTCGCTGTTTGGATTATAGTGAAGAAGAA
GATCCAGTCTCAAGCACAGGCTCCTGCCGGCCCTAGACAGGCCTGGGCAG
ACGATGGCGTCGACCTGATATGAACCAGAACTATATATAAACGCATGTCG
TTACTTGCATGTCTATTTAGATATGTTAGCATAGGCGTAATTGTGCCTCC
CTTCACTTCTATCATTAACACAAACATACATCTATAAAATTCATACTGAT
GAACACAAAATCATTTTGGTATTATGTCTTGCACGTAAAATCGGCTGAAC
ACTTCTGAAACGACAAAGGTCCTTTAAAATTGGAGAGATCAAGAGTTACT
GAGACCGTTGGAAAAATTGTTTCTGCTTGCGCCCCAGGCGATGGGATGAT
TGGTTGAAGCATCTGTGTCCCACACCCAGGGATAGCGGAACAAAACAGGC
CACGTGATAAGAAGATCACAATCTTCCCCCATCAACCTCTGCTCGAAGAT
GCATAGACTCTACCAGTCTCCCCGGTCGCTGGGAAAATAGTAGAAATTGG
CCAAATAGAGTCAAATGTTTGAAGGGAGTCGGCTACGGAGATAGGGTCAA
ATTGGCAACCGAGGATGCATATGTACTTCTACTGCTGTCAGTTAGTCTCT
ACATACTAGGACACATACTGTGCACACCAAAATTACAGAACAAAGAGCGC
AAAATGTCAGCATTCCAAATAATTGTTTGTTGTAACATTTGTTGTATGTT
AACGTTGCATCTTATCTGTGCAAATGTATTGAATATATACTATAATATAG
GACGGACCACTGAACTTGGACTGGAACGGCAAAGGACTACGAGTTTTGTA
CATATTGCTAAGTGATGTATAGATACAATATAAGGTGTAGTTGTCCTAAG
AATAAACACATATTCAACCTGGCATTATGAGTCACTCTT Coding sequence (CDS) from alignment at Sc0000158:187684..195272- >transcript:BL96239_cuf3 ID=transcript:BL96239_cuf3|Name=transcript:BL96239_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2460bp|location=Sequence derived from alignment at Sc0000158:187684..195272- (Branchiostoma lanceolatum)
GGGTACTCAGGGGACGGCGTGGCTTGCTCAGATGTCAACGAGTGCCAGAG
CAACCTTGACAACTGCCACGCCGATGCCTTCTGCACCAACACCGTGGGGT
CTTTCGATTGTACATGTAAGGAAGGCTACGACGGAGATGGAGTCACCTGC
GAAGACATAAACGAATGCGTCCTGAACATACACGATTGTCACGATGACGC
CAACTGTACCAACACCAAAGGGTCCTTCAGCTGTCTCTGCAACTCCGGCT
ACTCCGGCAATGGGACCTACTGCAGTGAGAACGTCTACGGCACAAATGCC
CCCTTTATAGCCAGCTCACCAGCTCCAGAGTCACCATCGCCTTCACCCCA
CTATCTATGGACGCTTCTCGTAGCGGTAGGGGGAGTGTCCTTCGCTGTTT
GGATTATAGTGAAGAAGAAGATCCAGTCTCAAGCACAGGCTCCTGCCGGC
CCTAGACAGGCCTGGGCAGACGATGGCGTCGACCTGATATGAGGGTACTC
AGGGGACGGCGTGGCTTGCTCAGATGTCAACGAGTGCCAGAGCAACCTTG
ACAACTGCCACGCCGATGCCTTCTGCACCAACACCGTGGGGTCTTTCGAT
TGTACATGTAAGGAAGGCTACGACGGAGATGGAGTCACCTGCGAAGACAT
AAACGAATGCGTCCTGAACATACACGATTGTCACGATGACGCCAACTGTA
CCAACACCAAAGGGTCCTTCAGCTGTCTCTGCAACTCCGGCTACTCCGGC
AATGGGACCTACTGCAGTGAGAACGTCTACGGCACAAATGCCCCCTTTAT
AGCCAGCTCACCAGCTCCAGAGTCACCATCGCCTTCACCCCACTATCTAT
GGACGCTTCTCGTAGCGGTAGGGGGAGTGTCCTTCGCTGTTTGGATTATA
GTGAAGAAGAAGATCCAGTCTCAAGCACAGGCTCCTGCCGGCCCTAGACA
GGCCTGGGCAGACGATGGCGTCGACCTGATATGAGGGTACTCAGGGGACG
GCGTGGCTTGCTCAGATGTCAACGAGTGCCAGAGCAACCTTGACAACTGC
CACGCCGATGCCTTCTGCACCAACACCGTGGGGTCTTTCGATTGTACATG
TAAGGAAGGCTACGACGGAGATGGAGTCACCTGCGAAGACATAAACGAAT
GCGTCCTGAACATACACGATTGTCACGATGACGCCAACTGTACCAACACC
AAAGGGTCCTTCAGCTGTCTCTGCAACTCCGGCTACTCCGGCAATGGGAC
CTACTGCAGTGAGAACGTCTACGGCACAAATGCCCCCTTTATAGCCAGCT
CACCAGCTCCAGAGTCACCATCGCCTTCACCCCACTATCTATGGACGCTT
CTCGTAGCGGTAGGGGGAGTGTCCTTCGCTGTTTGGATTATAGTGAAGAA
GAAGATCCAGTCTCAAGCACAGGCTCCTGCCGGCCCTAGACAGGCCTGGG
CAGACGATGGCGTCGACCTGATATGAGGGTACTCAGGGGACGGCGTGGCT
TGCTCAGATGTCAACGAGTGCCAGAGCAACCTTGACAACTGCCACGCCGA
TGCCTTCTGCACCAACACCGTGGGGTCTTTCGATTGTACATGTAAGGAAG
GCTACGACGGAGATGGAGTCACCTGCGAAGACATAAACGAATGCGTCCTG
AACATACACGATTGTCACGATGACGCCAACTGTACCAACACCAAAGGGTC
CTTCAGCTGTCTCTGCAACTCCGGCTACTCCGGCAATGGGACCTACTGCA
GTGAGAACGTCTACGGCACAAATGCCCCCTTTATAGCCAGCTCACCAGCT
CCAGAGTCACCATCGCCTTCACCCCACTATCTATGGACGCTTCTCGTAGC
GGTAGGGGGAGTGTCCTTCGCTGTTTGGATTATAGTGAAGAAGAAGATCC
AGTCTCAAGCACAGGCTCCTGCCGGCCCTAGACAGGCCTGGGCAGACGAT
GGCGTCGACCTGATATGAGGGTACTCAGGGGACGGCGTGGCTTGCTCAGA
TGTCAACGAGTGCCAGAGCAACCTTGACAACTGCCACGCCGATGCCTTCT
GCACCAACACCGTGGGGTCTTTCGATTGTACATGTAAGGAAGGCTACGAC
GGAGATGGAGTCACCTGCGAAGACATAAACGAATGCGTCCTGAACATACA
CGATTGTCACGATGACGCCAACTGTACCAACACCAAAGGGTCCTTCAGCT
GTCTCTGCAACTCCGGCTACTCCGGCAATGGGACCTACTGCAGTGAGAAC
GTCTACGGCACAAATGCCCCCTTTATAGCCAGCTCACCAGCTCCAGAGTC
ACCATCGCCTTCACCCCACTATCTATGGACGCTTCTCGTAGCGGTAGGGG
GAGTGTCCTTCGCTGTTTGGATTATAGTGAAGAAGAAGATCCAGTCTCAA
GCACAGGCTCCTGCCGGCCCTAGACAGGCCTGGGCAGACGATGGCGTCGA
CCTGATATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000158 | genome | Sc0000158:187684..195272 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96239_cuf3 |
| Biotype | protein_coding |
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