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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96229_cuf2 >transcript:BL96229_cuf2-protein ID=transcript:BL96229_cuf2-protein|Name=transcript:BL96229_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=406bp
QEMLTHANNTFDCTNRHSFDVPLGHDSAVSFFRVLKENNFIDKYTKSVTI
ALNFYNPSLKLFSVVNMIIDRSGVGHLLPRASITSFKLFQYESDADYKDL
LVHILFTLVLAVMVYKELKGMKNTGWKYFTSNWNALVCISLIGTATTISV
FIKRYLVASETLEMVAKSKGELGFERFVDLQTAAYWDACFNHILGLVVFI
NTISLLRVVRFSEPIGKLLALPGVMKEELMSFVVVAVVAFMAFISSGFLI
FGSEMESYTDLYHTAFALFEMMLGRFFAQDMLDTNPLIGPIFFSTFMVCI
FILLMNFLMTIICDAISADVDVNHDRDLADHMWKSFGAMLGFHSTPNKEE
KPGVLKMEELNAKICIIREKLDEGLDICNSILPSRRQEKHQKDKEVPRFL
KSGHCN Run BLAST on NCBI mRNA from alignment at Sc0000003:7430262..7432174+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96229_cuf2 ID=transcript:BL96229_cuf2|Name=transcript:BL96229_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1913bp|location=Sequence derived from alignment at Sc0000003:7430262..7432174+ (Branchiostoma lanceolatum)
TCAGGAGATGTTAACTCATGCCAACAACACATTCGACTGCACGAATCGCC
ACTCGTTTGACGTGCCTTTGGGTCATGACTCCGCGGTTTCATTCTTTCGC
GTCTTGAAAGAAAACAATTTTATCGACAAGTACACAAAATCCGTGACAAT
CGCGCTGAACTTCTACAACCCCAGCCTGAAGCTGTTCAGCGTTGTGAACA
TGATCATAGATCGTTCCGGAGTAGGGCATCTCTTGCCGAGAGCAAGCATC
ACTTCGTTTAAACTGTTTCAATACGAAAGTGATGCTGACTATAAGGACTT
GTTAGTGCACATTCTGTTCACACTCGTCCTCGCAGTAATGGTTTATAAGG
AACTAAAAGGAATGAAAAACACGGGATGGAAATATTTCACTTCGAACTGG
AACGCCCTTGTGTGCATTAGCCTCATCGGTACAGCTACAACAATCTCTGT
CTTCATCAAGCGATATCTGGTGGCATCTGAAACACTCGAAATGGTCGCCA
AAAGTAAAGGTACGTCCAACTTGTCGCTAGTATTTGGATAAACAACATTC
TTGTTTTGTATGAATGATTTCCTTAATTACCCTTTATCCTATGCATCCAT
ATGACACATTACATTCCATTAATTTAATTTTACTTTATACTTGTTGACTT
GAATAAAAGTACCCCTTTGATGACATTTCTTTTTCTTTTATCCACCAGGT
GAGCTGGGATTTGAACGCTTTGTTGACCTGCAAACTGCTGCATACTGGGA
TGCTTGCTTTAATCACATCTTGGGTCTTGTTGTCTTCATCAACACCATTT
CCTTACTTCGCGTCGTCCGCTTCAGTGAACCCATAGGTAAACTCCTGGCC
CTTCCCGGTGTCATGAAAGAGGAGCTGATGTCATTCGTAGTTGTTGCTGT
CGTGGCCTTCATGGCATTTATCAGTTCAGGTAAGTATTCTAAAACCATGT
CATATTTTCTTTGGACCTTTGCTGACATTACATATTGTAAAAAAACTTGT
TGGTGCCATATTTGCCCATCTATGCGCTCATTGTGTTGACACCTTATTTG
TATTTCTAGGATTTCTCATATTCGGAAGCGAAATGGAATCTTACACAGAC
CTGTACCATACAGCGTTCGCACTCTTCGAGATGATGCTCGGCAGGTTAGT
TTTACTAAATAGGTGTAAATTTTATATATGAAACATGTCGTATTCTTTGC
ACTTCAGCAAGTAGTGCTATCAAGGACGTTGTATAATGATGAGTGTTTTG
ATCCCAGGTTCTTCGCCCAAGACATGTTGGATACCAATCCTCTCATCGGA
CCGATCTTCTTCTCCACCTTCATGGTCTGCATCTTCATCCTCCTGATGAA
CTTCCTCATGACCATCATCTGTGACGCCATTTCCGCTGACGTTGACGTCA
ACCATGACCGTGATCTTGCCGATCACATGTGGAAGAGCTTTGGGGCCATG
TTGGGGTTTCACAGCACACCGAATAAAGAGGAGAAACCAGGTAAAATAAG
CAAAATTACTTCAGTAGCAACATCGCGTATCTCCTTTCTGGCTTATTTTG
TAAAGTGCTAGTGATAACCGTAATTCTACTTTGTTTTCTAATTTTTATTT
GATTTTTTATAAATGTGCCATGCATACGTCATGTTTTTGTTATGTAGATA
TTTATGTATTGTGGATCTACTGTCTTTGAAGTAGATTAGAAATCATGTCC
AAATGCTGGAGCTATGTGTTTACCATACAATTTCTCAACCCTGTTGCGAA
GGTGTCTTGAAGATGGAAGAGCTAAATGCCAAAATATGCATCATTCGAGA
GAAACTTGATGAAGGTCTGGACATCTGCAACTCCATCCTGCCTTCGCGTC
GACAGGAAAAACATCAGAAGGACAAAGAAGTGCCCAGGTTCTTGAAGTCT
GGCCACTGTAACA Coding sequence (CDS) from alignment at Sc0000003:7430262..7432174+ >transcript:BL96229_cuf2 ID=transcript:BL96229_cuf2|Name=transcript:BL96229_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=6090bp|location=Sequence derived from alignment at Sc0000003:7430262..7432174+ (Branchiostoma lanceolatum)
CAGGAGATGTTAACTCATGCCAACAACACATTCGACTGCACGAATCGCCA
CTCGTTTGACGTGCCTTTGGGTCATGACTCCGCGGTTTCATTCTTTCGCG
TCTTGAAAGAAAACAATTTTATCGACAAGTACACAAAATCCGTGACAATC
GCGCTGAACTTCTACAACCCCAGCCTGAAGCTGTTCAGCGTTGTGAACAT
GATCATAGATCGTTCCGGAGTAGGGCATCTCTTGCCGAGAGCAAGCATCA
CTTCGTTTAAACTGTTTCAATACGAAAGTGATGCTGACTATAAGGACTTG
TTAGTGCACATTCTGTTCACACTCGTCCTCGCAGTAATGGTTTATAAGGA
ACTAAAAGGAATGAAAAACACGGGATGGAAATATTTCACTTCGAACTGGA
ACGCCCTTGTGTGCATTAGCCTCATCGGTACAGCTACAACAATCTCTGTC
TTCATCAAGCGATATCTGGTGGCATCTGAAACACTCGAAATGGTCGCCAA
AAGTAAAGGTGAGCTGGGATTTGAACGCTTTGTTGACCTGCAAACTGCTG
CATACTGGGATGCTTGCTTTAATCACATCTTGGGTCTTGTTGTCTTCATC
AACACCATTTCCTTACTTCGCGTCGTCCGCTTCAGTGAACCCATAGGTAA
ACTCCTGGCCCTTCCCGGTGTCATGAAAGAGGAGCTGATGTCATTCGTAG
TTGTTGCTGTCGTGGCCTTCATGGCATTTATCAGTTCAGGATTTCTCATA
TTCGGAAGCGAAATGGAATCTTACACAGACCTGTACCATACAGCGTTCGC
ACTCTTCGAGATGATGCTCGGCAGGTTCTTCGCCCAAGACATGTTGGATA
CCAATCCTCTCATCGGACCGATCTTCTTCTCCACCTTCATGGTCTGCATC
TTCATCCTCCTGATGAACTTCCTCATGACCATCATCTGTGACGCCATTTC
CGCTGACGTTGACGTCAACCATGACCGTGATCTTGCCGATCACATGTGGA
AGAGCTTTGGGGCCATGTTGGGGTTTCACAGCACACCGAATAAAGAGGAG
AAACCAGGTGTCTTGAAGATGGAAGAGCTAAATGCCAAAATATGCATCAT
TCGAGAGAAACTTGATGAAGGTCTGGACATCTGCAACTCCATCCTGCCTT
CGCGTCGACAGGAAAAACATCAGAAGGACAAAGAAGTGCCCAGGTTCTTG
AAGTCTGGCCACTGTAACCAGGAGATGTTAACTCATGCCAACAACACATT
CGACTGCACGAATCGCCACTCGTTTGACGTGCCTTTGGGTCATGACTCCG
CGGTTTCATTCTTTCGCGTCTTGAAAGAAAACAATTTTATCGACAAGTAC
ACAAAATCCGTGACAATCGCGCTGAACTTCTACAACCCCAGCCTGAAGCT
GTTCAGCGTTGTGAACATGATCATAGATCGTTCCGGAGTAGGGCATCTCT
TGCCGAGAGCAAGCATCACTTCGTTTAAACTGTTTCAATACGAAAGTGAT
GCTGACTATAAGGACTTGTTAGTGCACATTCTGTTCACACTCGTCCTCGC
AGTAATGGTTTATAAGGAACTAAAAGGAATGAAAAACACGGGATGGAAAT
ATTTCACTTCGAACTGGAACGCCCTTGTGTGCATTAGCCTCATCGGTACA
GCTACAACAATCTCTGTCTTCATCAAGCGATATCTGGTGGCATCTGAAAC
ACTCGAAATGGTCGCCAAAAGTAAAGGTGAGCTGGGATTTGAACGCTTTG
TTGACCTGCAAACTGCTGCATACTGGGATGCTTGCTTTAATCACATCTTG
GGTCTTGTTGTCTTCATCAACACCATTTCCTTACTTCGCGTCGTCCGCTT
CAGTGAACCCATAGGTAAACTCCTGGCCCTTCCCGGTGTCATGAAAGAGG
AGCTGATGTCATTCGTAGTTGTTGCTGTCGTGGCCTTCATGGCATTTATC
AGTTCAGGATTTCTCATATTCGGAAGCGAAATGGAATCTTACACAGACCT
GTACCATACAGCGTTCGCACTCTTCGAGATGATGCTCGGCAGGTTCTTCG
CCCAAGACATGTTGGATACCAATCCTCTCATCGGACCGATCTTCTTCTCC
ACCTTCATGGTCTGCATCTTCATCCTCCTGATGAACTTCCTCATGACCAT
CATCTGTGACGCCATTTCCGCTGACGTTGACGTCAACCATGACCGTGATC
TTGCCGATCACATGTGGAAGAGCTTTGGGGCCATGTTGGGGTTTCACAGC
ACACCGAATAAAGAGGAGAAACCAGGTGTCTTGAAGATGGAAGAGCTAAA
TGCCAAAATATGCATCATTCGAGAGAAACTTGATGAAGGTCTGGACATCT
GCAACTCCATCCTGCCTTCGCGTCGACAGGAAAAACATCAGAAGGACAAA
GAAGTGCCCAGGTTCTTGAAGTCTGGCCACTGTAACCAGGAGATGTTAAC
TCATGCCAACAACACATTCGACTGCACGAATCGCCACTCGTTTGACGTGC
CTTTGGGTCATGACTCCGCGGTTTCATTCTTTCGCGTCTTGAAAGAAAAC
AATTTTATCGACAAGTACACAAAATCCGTGACAATCGCGCTGAACTTCTA
CAACCCCAGCCTGAAGCTGTTCAGCGTTGTGAACATGATCATAGATCGTT
CCGGAGTAGGGCATCTCTTGCCGAGAGCAAGCATCACTTCGTTTAAACTG
TTTCAATACGAAAGTGATGCTGACTATAAGGACTTGTTAGTGCACATTCT
GTTCACACTCGTCCTCGCAGTAATGGTTTATAAGGAACTAAAAGGAATGA
AAAACACGGGATGGAAATATTTCACTTCGAACTGGAACGCCCTTGTGTGC
ATTAGCCTCATCGGTACAGCTACAACAATCTCTGTCTTCATCAAGCGATA
TCTGGTGGCATCTGAAACACTCGAAATGGTCGCCAAAAGTAAAGGTGAGC
TGGGATTTGAACGCTTTGTTGACCTGCAAACTGCTGCATACTGGGATGCT
TGCTTTAATCACATCTTGGGTCTTGTTGTCTTCATCAACACCATTTCCTT
ACTTCGCGTCGTCCGCTTCAGTGAACCCATAGGTAAACTCCTGGCCCTTC
CCGGTGTCATGAAAGAGGAGCTGATGTCATTCGTAGTTGTTGCTGTCGTG
GCCTTCATGGCATTTATCAGTTCAGGATTTCTCATATTCGGAAGCGAAAT
GGAATCTTACACAGACCTGTACCATACAGCGTTCGCACTCTTCGAGATGA
TGCTCGGCAGGTTCTTCGCCCAAGACATGTTGGATACCAATCCTCTCATC
GGACCGATCTTCTTCTCCACCTTCATGGTCTGCATCTTCATCCTCCTGAT
GAACTTCCTCATGACCATCATCTGTGACGCCATTTCCGCTGACGTTGACG
TCAACCATGACCGTGATCTTGCCGATCACATGTGGAAGAGCTTTGGGGCC
ATGTTGGGGTTTCACAGCACACCGAATAAAGAGGAGAAACCAGGTGTCTT
GAAGATGGAAGAGCTAAATGCCAAAATATGCATCATTCGAGAGAAACTTG
ATGAAGGTCTGGACATCTGCAACTCCATCCTGCCTTCGCGTCGACAGGAA
AAACATCAGAAGGACAAAGAAGTGCCCAGGTTCTTGAAGTCTGGCCACTG
TAACCAGGAGATGTTAACTCATGCCAACAACACATTCGACTGCACGAATC
GCCACTCGTTTGACGTGCCTTTGGGTCATGACTCCGCGGTTTCATTCTTT
CGCGTCTTGAAAGAAAACAATTTTATCGACAAGTACACAAAATCCGTGAC
AATCGCGCTGAACTTCTACAACCCCAGCCTGAAGCTGTTCAGCGTTGTGA
ACATGATCATAGATCGTTCCGGAGTAGGGCATCTCTTGCCGAGAGCAAGC
ATCACTTCGTTTAAACTGTTTCAATACGAAAGTGATGCTGACTATAAGGA
CTTGTTAGTGCACATTCTGTTCACACTCGTCCTCGCAGTAATGGTTTATA
AGGAACTAAAAGGAATGAAAAACACGGGATGGAAATATTTCACTTCGAAC
TGGAACGCCCTTGTGTGCATTAGCCTCATCGGTACAGCTACAACAATCTC
TGTCTTCATCAAGCGATATCTGGTGGCATCTGAAACACTCGAAATGGTCG
CCAAAAGTAAAGGTGAGCTGGGATTTGAACGCTTTGTTGACCTGCAAACT
GCTGCATACTGGGATGCTTGCTTTAATCACATCTTGGGTCTTGTTGTCTT
CATCAACACCATTTCCTTACTTCGCGTCGTCCGCTTCAGTGAACCCATAG
GTAAACTCCTGGCCCTTCCCGGTGTCATGAAAGAGGAGCTGATGTCATTC
GTAGTTGTTGCTGTCGTGGCCTTCATGGCATTTATCAGTTCAGGATTTCT
CATATTCGGAAGCGAAATGGAATCTTACACAGACCTGTACCATACAGCGT
TCGCACTCTTCGAGATGATGCTCGGCAGGTTCTTCGCCCAAGACATGTTG
GATACCAATCCTCTCATCGGACCGATCTTCTTCTCCACCTTCATGGTCTG
CATCTTCATCCTCCTGATGAACTTCCTCATGACCATCATCTGTGACGCCA
TTTCCGCTGACGTTGACGTCAACCATGACCGTGATCTTGCCGATCACATG
TGGAAGAGCTTTGGGGCCATGTTGGGGTTTCACAGCACACCGAATAAAGA
GGAGAAACCAGGTGTCTTGAAGATGGAAGAGCTAAATGCCAAAATATGCA
TCATTCGAGAGAAACTTGATGAAGGTCTGGACATCTGCAACTCCATCCTG
CCTTCGCGTCGACAGGAAAAACATCAGAAGGACAAAGAAGTGCCCAGGTT
CTTGAAGTCTGGCCACTGTAACCAGGAGATGTTAACTCATGCCAACAACA
CATTCGACTGCACGAATCGCCACTCGTTTGACGTGCCTTTGGGTCATGAC
TCCGCGGTTTCATTCTTTCGCGTCTTGAAAGAAAACAATTTTATCGACAA
GTACACAAAATCCGTGACAATCGCGCTGAACTTCTACAACCCCAGCCTGA
AGCTGTTCAGCGTTGTGAACATGATCATAGATCGTTCCGGAGTAGGGCAT
CTCTTGCCGAGAGCAAGCATCACTTCGTTTAAACTGTTTCAATACGAAAG
TGATGCTGACTATAAGGACTTGTTAGTGCACATTCTGTTCACACTCGTCC
TCGCAGTAATGGTTTATAAGGAACTAAAAGGAATGAAAAACACGGGATGG
AAATATTTCACTTCGAACTGGAACGCCCTTGTGTGCATTAGCCTCATCGG
TACAGCTACAACAATCTCTGTCTTCATCAAGCGATATCTGGTGGCATCTG
AAACACTCGAAATGGTCGCCAAAAGTAAAGGTGAGCTGGGATTTGAACGC
TTTGTTGACCTGCAAACTGCTGCATACTGGGATGCTTGCTTTAATCACAT
CTTGGGTCTTGTTGTCTTCATCAACACCATTTCCTTACTTCGCGTCGTCC
GCTTCAGTGAACCCATAGGTAAACTCCTGGCCCTTCCCGGTGTCATGAAA
GAGGAGCTGATGTCATTCGTAGTTGTTGCTGTCGTGGCCTTCATGGCATT
TATCAGTTCAGGATTTCTCATATTCGGAAGCGAAATGGAATCTTACACAG
ACCTGTACCATACAGCGTTCGCACTCTTCGAGATGATGCTCGGCAGGTTC
TTCGCCCAAGACATGTTGGATACCAATCCTCTCATCGGACCGATCTTCTT
CTCCACCTTCATGGTCTGCATCTTCATCCTCCTGATGAACTTCCTCATGA
CCATCATCTGTGACGCCATTTCCGCTGACGTTGACGTCAACCATGACCGT
GATCTTGCCGATCACATGTGGAAGAGCTTTGGGGCCATGTTGGGGTTTCA
CAGCACACCGAATAAAGAGGAGAAACCAGGTGTCTTGAAGATGGAAGAGC
TAAATGCCAAAATATGCATCATTCGAGAGAAACTTGATGAAGGTCTGGAC
ATCTGCAACTCCATCCTGCCTTCGCGTCGACAGGAAAAACATCAGAAGGA
CAAAGAAGTGCCCAGGTTCTTGAAGTCTGGCCACTGTAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000003 | genome | Sc0000003:7430262..7432174 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96229_cuf2 |
| Biotype | protein_coding |
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