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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96227_cuf0 >transcript:BL96227_cuf0-protein ID=transcript:BL96227_cuf0-protein|Name=transcript:BL96227_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=337bp
DISIENMETIADALLQTASAVINALPKTETQTDSNSDNVFESDLIDTSST
DLSPKQQLKMLKEKEREKEDTQRKASQSIVASLDQVAETLLALQPEDVEY
HSSFKTENLAVNVARFSSDEELILDSGDIVATIPPTPGSKTHDMRDVKTL
LFKKNPYSWSESTGGQNISSSVTFLTIKSKNSQSESKGQEVKLDIPFVPS
QERGQPTGRPSQVTTERPSTADDNTNGTTMAYHAFNVQYDNVIPVVRMNW
WDVEVTFHVYISYGSPPTEEKYDEKRVIKEDGYEAWLRGTNFSTSFIPNT
TNHGGRILYVGVQKLGSVSFAKHQQQPTVQILSKDDY Run BLAST on NCBI mRNA from alignment at Sc0000003:7423267..7425026+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96227_cuf0 ID=transcript:BL96227_cuf0|Name=transcript:BL96227_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1760bp|location=Sequence derived from alignment at Sc0000003:7423267..7425026+ (Branchiostoma lanceolatum)
AGGACATATCTATTGAGAATATGGAGACCATAGCAGATGGTGAGAATGAT
TAATGTTATCTTTATATAATTCCTAGTTCCCGAGTGAAACTCATTCAATA
ACTCATTGCAGTGGGGCTACCATAAAATGACTGTTTTCCTGGAAGAGGCC
ATAATAAAAAAATCAAATTAGATTTAAGAAACTCGAATCTAATCTAATCT
ACTCTGACTTTTTTAAATTCCCAGAAATACTTTACTTGAAACCTTTGACG
TGTATAAAAACTAATGATACATATAAAGCCATTGCCACCTGATAAATTTG
TTTTGAAGCTAATTTCTTTCTTCTGTCTTTCAGCCTTGTTACAGACGGCT
TCAGCAGTTATCAATGCGTTACCGAAAACGGAAACACAGACTGACAGTAA
CTCCGACAATGTGTTTGAAAGTGATCTTATCGACACAAGTTCCACTGACC
TCTCCCCCAAGCAGCAGCTAAAGATGTTAAAAGAGAAGGAGAGGGAAAAA
GAGGACACGGTAAGAATTTAAATGACCTGTGAAGTTTCGTAATAAACATG
GTTTCTGATATTATAACAGTGTATTATTATTAAATCTCTTATTCTGATTT
GTAACATAACTACTGAAGGTCTCTTTTCACTATTAACCCTTTTTGTATTT
CTATCTAATTAAGCAACGAAAGGCGTCGCAGTCTATTGTGGCATCTTTGG
ACCAGGTTGCTGAAACCCTGCTGGCGTTGCAACCCGAGGATGTAGAGTAT
CACTCAAGCTTTAAAACAGAAAACCTCGCTGTCAATGTGGCGAGGTTTTC
CTCCGACGAAGAGCTCATCCTTGACTCTGGAGACATTGTGGCAACTATCC
CACCAACACCTGGGTCTAAGACACACGACATGCGTGATGTCAAGGTAGGA
AAGACACACACAAGTACCCCCCCCCCCAGCACAATGCCTTTTCCATTTTA
CTAGCATGTTACAACATCGTTAAAGATAAAATGATGTGCACGAGACAGCG
ATTATTTACTGTTCAACAAATGTCAAAGTCACTTCGTGTCTTGAACTTAC
ATTGTTAGAATAGTAATCCATGAACTGTTATATTTTGTGTTACAGACGTT
ACTTTTCAAGAAGAACCCATATTCATGGAGTGAATCAACCGGAGGACAAA
ACATCTCGTCATCAGTGACGTTTCTGACGATCAAATCAAAGAATTCCCAA
AGCGAAAGCAAAGGTCAAGAAGTAAAGCTGGATATTCCATTTGTACCGTC
CCAAGAGAGAGGACAGCCAACCGGCCGACCATCACAGGTAACGACAGAAA
GACCGAGCACGGCGGATGATAACACCAACGGCACAACAATGGCGTACCAT
GCCTTCAATGTTCAGTACGATAACGTCATCCCTGTTGTCCGTATGAACTG
GTGGGATGTAGAAGTGACATTTCACGTCTACATCTCCTACGGATCTCCTC
CGACTGAAGAAAAGTATGACGAGAAAAGAGTTATCAAGGAAGACGGATAT
GAAGCCTGGCTTCGGGGGACAAATTTTTCAACATCCTTCATTCCCAACAC
GACTAACCATGGCGGACGGATTCTGTATGTTGGCGTACAGAAGTTAGGTG
AGTTTTCCCCATGAAAGATACTTCATCTTTATGCTGTCTGTTTATCGAAT
TTGTAGCGATGGTGAAAATTGTATATACATATATACTTCACAGGATCGGT
CAGTTTTGCCAAACATCAACAGCAGCCTACCGTGCAGATCCTGAGCAAGG
ATGACTACAC Coding sequence (CDS) from alignment at Sc0000003:7423267..7425026+ >transcript:BL96227_cuf0 ID=transcript:BL96227_cuf0|Name=transcript:BL96227_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=5055bp|location=Sequence derived from alignment at Sc0000003:7423267..7425026+ (Branchiostoma lanceolatum)
GACATATCTATTGAGAATATGGAGACCATAGCAGATGCCTTGTTACAGAC
GGCTTCAGCAGTTATCAATGCGTTACCGAAAACGGAAACACAGACTGACA
GTAACTCCGACAATGTGTTTGAAAGTGATCTTATCGACACAAGTTCCACT
GACCTCTCCCCCAAGCAGCAGCTAAAGATGTTAAAAGAGAAGGAGAGGGA
AAAAGAGGACACGCAACGAAAGGCGTCGCAGTCTATTGTGGCATCTTTGG
ACCAGGTTGCTGAAACCCTGCTGGCGTTGCAACCCGAGGATGTAGAGTAT
CACTCAAGCTTTAAAACAGAAAACCTCGCTGTCAATGTGGCGAGGTTTTC
CTCCGACGAAGAGCTCATCCTTGACTCTGGAGACATTGTGGCAACTATCC
CACCAACACCTGGGTCTAAGACACACGACATGCGTGATGTCAAGACGTTA
CTTTTCAAGAAGAACCCATATTCATGGAGTGAATCAACCGGAGGACAAAA
CATCTCGTCATCAGTGACGTTTCTGACGATCAAATCAAAGAATTCCCAAA
GCGAAAGCAAAGGTCAAGAAGTAAAGCTGGATATTCCATTTGTACCGTCC
CAAGAGAGAGGACAGCCAACCGGCCGACCATCACAGGTAACGACAGAAAG
ACCGAGCACGGCGGATGATAACACCAACGGCACAACAATGGCGTACCATG
CCTTCAATGTTCAGTACGATAACGTCATCCCTGTTGTCCGTATGAACTGG
TGGGATGTAGAAGTGACATTTCACGTCTACATCTCCTACGGATCTCCTCC
GACTGAAGAAAAGTATGACGAGAAAAGAGTTATCAAGGAAGACGGATATG
AAGCCTGGCTTCGGGGGACAAATTTTTCAACATCCTTCATTCCCAACACG
ACTAACCATGGCGGACGGATTCTGTATGTTGGCGTACAGAAGTTAGGATC
GGTCAGTTTTGCCAAACATCAACAGCAGCCTACCGTGCAGATCCTGAGCA
AGGATGACTACGACATATCTATTGAGAATATGGAGACCATAGCAGATGCC
TTGTTACAGACGGCTTCAGCAGTTATCAATGCGTTACCGAAAACGGAAAC
ACAGACTGACAGTAACTCCGACAATGTGTTTGAAAGTGATCTTATCGACA
CAAGTTCCACTGACCTCTCCCCCAAGCAGCAGCTAAAGATGTTAAAAGAG
AAGGAGAGGGAAAAAGAGGACACGCAACGAAAGGCGTCGCAGTCTATTGT
GGCATCTTTGGACCAGGTTGCTGAAACCCTGCTGGCGTTGCAACCCGAGG
ATGTAGAGTATCACTCAAGCTTTAAAACAGAAAACCTCGCTGTCAATGTG
GCGAGGTTTTCCTCCGACGAAGAGCTCATCCTTGACTCTGGAGACATTGT
GGCAACTATCCCACCAACACCTGGGTCTAAGACACACGACATGCGTGATG
TCAAGACGTTACTTTTCAAGAAGAACCCATATTCATGGAGTGAATCAACC
GGAGGACAAAACATCTCGTCATCAGTGACGTTTCTGACGATCAAATCAAA
GAATTCCCAAAGCGAAAGCAAAGGTCAAGAAGTAAAGCTGGATATTCCAT
TTGTACCGTCCCAAGAGAGAGGACAGCCAACCGGCCGACCATCACAGGTA
ACGACAGAAAGACCGAGCACGGCGGATGATAACACCAACGGCACAACAAT
GGCGTACCATGCCTTCAATGTTCAGTACGATAACGTCATCCCTGTTGTCC
GTATGAACTGGTGGGATGTAGAAGTGACATTTCACGTCTACATCTCCTAC
GGATCTCCTCCGACTGAAGAAAAGTATGACGAGAAAAGAGTTATCAAGGA
AGACGGATATGAAGCCTGGCTTCGGGGGACAAATTTTTCAACATCCTTCA
TTCCCAACACGACTAACCATGGCGGACGGATTCTGTATGTTGGCGTACAG
AAGTTAGGATCGGTCAGTTTTGCCAAACATCAACAGCAGCCTACCGTGCA
GATCCTGAGCAAGGATGACTACGACATATCTATTGAGAATATGGAGACCA
TAGCAGATGCCTTGTTACAGACGGCTTCAGCAGTTATCAATGCGTTACCG
AAAACGGAAACACAGACTGACAGTAACTCCGACAATGTGTTTGAAAGTGA
TCTTATCGACACAAGTTCCACTGACCTCTCCCCCAAGCAGCAGCTAAAGA
TGTTAAAAGAGAAGGAGAGGGAAAAAGAGGACACGCAACGAAAGGCGTCG
CAGTCTATTGTGGCATCTTTGGACCAGGTTGCTGAAACCCTGCTGGCGTT
GCAACCCGAGGATGTAGAGTATCACTCAAGCTTTAAAACAGAAAACCTCG
CTGTCAATGTGGCGAGGTTTTCCTCCGACGAAGAGCTCATCCTTGACTCT
GGAGACATTGTGGCAACTATCCCACCAACACCTGGGTCTAAGACACACGA
CATGCGTGATGTCAAGACGTTACTTTTCAAGAAGAACCCATATTCATGGA
GTGAATCAACCGGAGGACAAAACATCTCGTCATCAGTGACGTTTCTGACG
ATCAAATCAAAGAATTCCCAAAGCGAAAGCAAAGGTCAAGAAGTAAAGCT
GGATATTCCATTTGTACCGTCCCAAGAGAGAGGACAGCCAACCGGCCGAC
CATCACAGGTAACGACAGAAAGACCGAGCACGGCGGATGATAACACCAAC
GGCACAACAATGGCGTACCATGCCTTCAATGTTCAGTACGATAACGTCAT
CCCTGTTGTCCGTATGAACTGGTGGGATGTAGAAGTGACATTTCACGTCT
ACATCTCCTACGGATCTCCTCCGACTGAAGAAAAGTATGACGAGAAAAGA
GTTATCAAGGAAGACGGATATGAAGCCTGGCTTCGGGGGACAAATTTTTC
AACATCCTTCATTCCCAACACGACTAACCATGGCGGACGGATTCTGTATG
TTGGCGTACAGAAGTTAGGATCGGTCAGTTTTGCCAAACATCAACAGCAG
CCTACCGTGCAGATCCTGAGCAAGGATGACTACGACATATCTATTGAGAA
TATGGAGACCATAGCAGATGCCTTGTTACAGACGGCTTCAGCAGTTATCA
ATGCGTTACCGAAAACGGAAACACAGACTGACAGTAACTCCGACAATGTG
TTTGAAAGTGATCTTATCGACACAAGTTCCACTGACCTCTCCCCCAAGCA
GCAGCTAAAGATGTTAAAAGAGAAGGAGAGGGAAAAAGAGGACACGCAAC
GAAAGGCGTCGCAGTCTATTGTGGCATCTTTGGACCAGGTTGCTGAAACC
CTGCTGGCGTTGCAACCCGAGGATGTAGAGTATCACTCAAGCTTTAAAAC
AGAAAACCTCGCTGTCAATGTGGCGAGGTTTTCCTCCGACGAAGAGCTCA
TCCTTGACTCTGGAGACATTGTGGCAACTATCCCACCAACACCTGGGTCT
AAGACACACGACATGCGTGATGTCAAGACGTTACTTTTCAAGAAGAACCC
ATATTCATGGAGTGAATCAACCGGAGGACAAAACATCTCGTCATCAGTGA
CGTTTCTGACGATCAAATCAAAGAATTCCCAAAGCGAAAGCAAAGGTCAA
GAAGTAAAGCTGGATATTCCATTTGTACCGTCCCAAGAGAGAGGACAGCC
AACCGGCCGACCATCACAGGTAACGACAGAAAGACCGAGCACGGCGGATG
ATAACACCAACGGCACAACAATGGCGTACCATGCCTTCAATGTTCAGTAC
GATAACGTCATCCCTGTTGTCCGTATGAACTGGTGGGATGTAGAAGTGAC
ATTTCACGTCTACATCTCCTACGGATCTCCTCCGACTGAAGAAAAGTATG
ACGAGAAAAGAGTTATCAAGGAAGACGGATATGAAGCCTGGCTTCGGGGG
ACAAATTTTTCAACATCCTTCATTCCCAACACGACTAACCATGGCGGACG
GATTCTGTATGTTGGCGTACAGAAGTTAGGATCGGTCAGTTTTGCCAAAC
ATCAACAGCAGCCTACCGTGCAGATCCTGAGCAAGGATGACTACGACATA
TCTATTGAGAATATGGAGACCATAGCAGATGCCTTGTTACAGACGGCTTC
AGCAGTTATCAATGCGTTACCGAAAACGGAAACACAGACTGACAGTAACT
CCGACAATGTGTTTGAAAGTGATCTTATCGACACAAGTTCCACTGACCTC
TCCCCCAAGCAGCAGCTAAAGATGTTAAAAGAGAAGGAGAGGGAAAAAGA
GGACACGCAACGAAAGGCGTCGCAGTCTATTGTGGCATCTTTGGACCAGG
TTGCTGAAACCCTGCTGGCGTTGCAACCCGAGGATGTAGAGTATCACTCA
AGCTTTAAAACAGAAAACCTCGCTGTCAATGTGGCGAGGTTTTCCTCCGA
CGAAGAGCTCATCCTTGACTCTGGAGACATTGTGGCAACTATCCCACCAA
CACCTGGGTCTAAGACACACGACATGCGTGATGTCAAGACGTTACTTTTC
AAGAAGAACCCATATTCATGGAGTGAATCAACCGGAGGACAAAACATCTC
GTCATCAGTGACGTTTCTGACGATCAAATCAAAGAATTCCCAAAGCGAAA
GCAAAGGTCAAGAAGTAAAGCTGGATATTCCATTTGTACCGTCCCAAGAG
AGAGGACAGCCAACCGGCCGACCATCACAGGTAACGACAGAAAGACCGAG
CACGGCGGATGATAACACCAACGGCACAACAATGGCGTACCATGCCTTCA
ATGTTCAGTACGATAACGTCATCCCTGTTGTCCGTATGAACTGGTGGGAT
GTAGAAGTGACATTTCACGTCTACATCTCCTACGGATCTCCTCCGACTGA
AGAAAAGTATGACGAGAAAAGAGTTATCAAGGAAGACGGATATGAAGCCT
GGCTTCGGGGGACAAATTTTTCAACATCCTTCATTCCCAACACGACTAAC
CATGGCGGACGGATTCTGTATGTTGGCGTACAGAAGTTAGGATCGGTCAG
TTTTGCCAAACATCAACAGCAGCCTACCGTGCAGATCCTGAGCAAGGATG
ACTAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000003 | genome | Sc0000003:7423267..7425026 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96227_cuf0 |
| Biotype | protein_coding |
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