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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96221_cuf2 >transcript:BL96221_cuf2-protein ID=transcript:BL96221_cuf2-protein|Name=transcript:BL96221_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=303bp
EESGRQHSGQESEDSGAVGDYKFDDLNSNYPSVTVDSRLPIIDFEQLDFP
ERSLLGQGAFGSVKKAIHRSWRQEVAVKSLTFEIYGTSEQELLYSEARKL
NVGSRSDYIIRLLGICLEPHFAIVMPFMENGSLSELLQDIDVPSALRWRM
AREIAMGMTFLHCQNPQIIHCDLKAENVLLDGDFHVKISDFGLSKWKMQS
RIVTETSPLGGTPTHVPPEFFDTDGDPTDKSDVYSFGVLMWEIATRRRPY
RDTEGRLNIGRPLSCYVTGGGRPDMSLVPTGVPGVDTVNQLMQACWSQSP
EDR Run BLAST on NCBI mRNA from alignment at Sc0000003:5746271..5748122+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96221_cuf2 ID=transcript:BL96221_cuf2|Name=transcript:BL96221_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=1852bp|location=Sequence derived from alignment at Sc0000003:5746271..5748122+ (Branchiostoma lanceolatum)
AGAAGAAAGTGGTCGACAGCACAGCGGTCAGGAATCAGAAGATAGTGGTG
CTGTCGGTGATTATAAATTTGATGACCTGAACAGGTACAAACTGGAATTA
TTATTTTTTCTGCGGTCAACCAATTTTGCACATGCTCATGACTATATTTA
TGTTTTAGATTTATGCCCCCTCCCCTTTACATTATTCATACATTCTCCCA
CATTCTCAGCAACTATCCCAGCGTGACAGTTGATAGCAGGCTCCCCATCA
TCGACTTTGAGCAGCTCGACTTCCCGGAGAGGTCCCTTCTTGGCCAAGGA
GCATTCGGCTCTGTGAAGAAAGCCATCCATCGAAGCTGGAGACAGGAAGT
AGCTGTCAAAAGTCTGACCTTCGAAATATATGGAACGTAAGTACCAGAAT
TTTTGTTCTTAAATGGCACCTATATTGTCATTTGCTTTTCTGCAAATGTT
TTGAACTTGCTTCGTTTGCGATAGTCAGACAGAAGGTAAATATTCCAATA
TCAACAAACAGTATGACCTGACCTTTGGGTGTTGTTAGAATATTCAAAAT
AATTTGACTTTTGCCTTACCACAGAAGTGAGCAAGAGCTGCTGTACTCTG
AGGCGAGGAAGCTGAACGTGGGGAGTCGATCAGACTACATCATCCGTCTG
TTGGGCATCTGCCTCGAGCCACATTTCGCCATCGTGATGCCCTTCATGGA
GAACGGCTCGCTATCAGAGCTGCTGCAGGATATCGACGTGCCATCCGCTC
TGAGGTGGAGAATGGCGCGGGAGATAGCCATGGGGATGACTTTCCTGCAC
TGCCAGAACCCGCAGATCATCCACTGTGATCTGAAGGCAGAAAACGTTCT
GCTTGATGGCGACTTCCACGTGAAGGTACGACGTGACACATACCACAAAA
TATAAGTCGTATTGTTTTAGATACCAGTCTTTAAAATTTGCTTTCCTACC
GGTACAATTCTACATGACAGTACTGATATAGAATTGCATGTTTTTTCCTT
CGAGGAATCAATTAATTTTGTTTCCGTATTTTCTGCTCAGCCCTAGGCCT
TCTAATCTACCATCATACGTAGTGAGTAACAAACAACAATTATTAGATTT
CAGACTTTGGCCTTTCCAAATGGAAGATGCAATCCCGCATTGTGACTGAA
ACCAGTCCTTTGGGCGGCACCCCCACACATGTTCCACCGGAGTTCTTTGA
CACGGACGGCGATCCAACCGACAAGTCTGATGTGTACAGGTACCTACGCA
TGCTATAATTGTTTTGCTGCATCTTTCTTTATCAACGACTACGCGGCTAA
ATGTCGCACATTTATTTAAAATCTTTATGAAGTTTTCTTGATTAGAAGAG
TTATTTGATTTCCGATCCCTATATTTGACAGATTTTTTGTATAATTTCAG
CTTTGGGGTGCTGATGTGGGAGATTGCAACCCGAAGAAGGCCCTATCGAG
GCAAGTAAATCATTTCTTAAACATTTAGGCCACATATTCACTGTCATTCT
CGACAGGGGCGCGTGGAGACGCCGGTGTCACCTTACGAGAATGAACTGAA
CTGAAGTTCTGCTTGATAATGTACTGAAGCCAATGGCTCCAAGCAAGTTA
CGGATATCTTGCAGGCAAGTTGCAGTGTACTCACAACTTTGACTATATTC
CATTGATATTCATTTTTTTATTTATCTATCATCAACATTTTCTGCAGATA
CTGAAGGCAGATTGAATATCGGCAGGCCTCTCAGTTGTTACGTGACAGGC
GGAGGGCGGCCGGACATGTCACTGGTCCCCACAGGCGTGCCGGGTGTAGA
CACCGTTAACCAACTGATGCAGGCATGCTGGAGTCAGAGTCCAGAGGATA
GG Coding sequence (CDS) from alignment at Sc0000003:5746271..5748122+ >transcript:BL96221_cuf2 ID=transcript:BL96221_cuf2|Name=transcript:BL96221_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=5454bp|location=Sequence derived from alignment at Sc0000003:5746271..5748122+ (Branchiostoma lanceolatum)
GAAGAAAGTGGTCGACAGCACAGCGGTCAGGAATCAGAAGATAGTGGTGC
TGTCGGTGATTATAAATTTGATGACCTGAACAGCAACTATCCCAGCGTGA
CAGTTGATAGCAGGCTCCCCATCATCGACTTTGAGCAGCTCGACTTCCCG
GAGAGGTCCCTTCTTGGCCAAGGAGCATTCGGCTCTGTGAAGAAAGCCAT
CCATCGAAGCTGGAGACAGGAAGTAGCTGTCAAAAGTCTGACCTTCGAAA
TATATGGAACAAGTGAGCAAGAGCTGCTGTACTCTGAGGCGAGGAAGCTG
AACGTGGGGAGTCGATCAGACTACATCATCCGTCTGTTGGGCATCTGCCT
CGAGCCACATTTCGCCATCGTGATGCCCTTCATGGAGAACGGCTCGCTAT
CAGAGCTGCTGCAGGATATCGACGTGCCATCCGCTCTGAGGTGGAGAATG
GCGCGGGAGATAGCCATGGGGATGACTTTCCTGCACTGCCAGAACCCGCA
GATCATCCACTGTGATCTGAAGGCAGAAAACGTTCTGCTTGATGGCGACT
TCCACGTGAAGATTTCAGACTTTGGCCTTTCCAAATGGAAGATGCAATCC
CGCATTGTGACTGAAACCAGTCCTTTGGGCGGCACCCCCACACATGTTCC
ACCGGAGTTCTTTGACACGGACGGCGATCCAACCGACAAGTCTGATGTGT
ACAGCTTTGGGGTGCTGATGTGGGAGATTGCAACCCGAAGAAGGCCCTAT
CGAGATACTGAAGGCAGATTGAATATCGGCAGGCCTCTCAGTTGTTACGT
GACAGGCGGAGGGCGGCCGGACATGTCACTGGTCCCCACAGGCGTGCCGG
GTGTAGACACCGTTAACCAACTGATGCAGGCATGCTGGAGTCAGAGTCCA
GAGGATAGGGAAGAAAGTGGTCGACAGCACAGCGGTCAGGAATCAGAAGA
TAGTGGTGCTGTCGGTGATTATAAATTTGATGACCTGAACAGCAACTATC
CCAGCGTGACAGTTGATAGCAGGCTCCCCATCATCGACTTTGAGCAGCTC
GACTTCCCGGAGAGGTCCCTTCTTGGCCAAGGAGCATTCGGCTCTGTGAA
GAAAGCCATCCATCGAAGCTGGAGACAGGAAGTAGCTGTCAAAAGTCTGA
CCTTCGAAATATATGGAACAAGTGAGCAAGAGCTGCTGTACTCTGAGGCG
AGGAAGCTGAACGTGGGGAGTCGATCAGACTACATCATCCGTCTGTTGGG
CATCTGCCTCGAGCCACATTTCGCCATCGTGATGCCCTTCATGGAGAACG
GCTCGCTATCAGAGCTGCTGCAGGATATCGACGTGCCATCCGCTCTGAGG
TGGAGAATGGCGCGGGAGATAGCCATGGGGATGACTTTCCTGCACTGCCA
GAACCCGCAGATCATCCACTGTGATCTGAAGGCAGAAAACGTTCTGCTTG
ATGGCGACTTCCACGTGAAGATTTCAGACTTTGGCCTTTCCAAATGGAAG
ATGCAATCCCGCATTGTGACTGAAACCAGTCCTTTGGGCGGCACCCCCAC
ACATGTTCCACCGGAGTTCTTTGACACGGACGGCGATCCAACCGACAAGT
CTGATGTGTACAGCTTTGGGGTGCTGATGTGGGAGATTGCAACCCGAAGA
AGGCCCTATCGAGATACTGAAGGCAGATTGAATATCGGCAGGCCTCTCAG
TTGTTACGTGACAGGCGGAGGGCGGCCGGACATGTCACTGGTCCCCACAG
GCGTGCCGGGTGTAGACACCGTTAACCAACTGATGCAGGCATGCTGGAGT
CAGAGTCCAGAGGATAGGGAAGAAAGTGGTCGACAGCACAGCGGTCAGGA
ATCAGAAGATAGTGGTGCTGTCGGTGATTATAAATTTGATGACCTGAACA
GCAACTATCCCAGCGTGACAGTTGATAGCAGGCTCCCCATCATCGACTTT
GAGCAGCTCGACTTCCCGGAGAGGTCCCTTCTTGGCCAAGGAGCATTCGG
CTCTGTGAAGAAAGCCATCCATCGAAGCTGGAGACAGGAAGTAGCTGTCA
AAAGTCTGACCTTCGAAATATATGGAACAAGTGAGCAAGAGCTGCTGTAC
TCTGAGGCGAGGAAGCTGAACGTGGGGAGTCGATCAGACTACATCATCCG
TCTGTTGGGCATCTGCCTCGAGCCACATTTCGCCATCGTGATGCCCTTCA
TGGAGAACGGCTCGCTATCAGAGCTGCTGCAGGATATCGACGTGCCATCC
GCTCTGAGGTGGAGAATGGCGCGGGAGATAGCCATGGGGATGACTTTCCT
GCACTGCCAGAACCCGCAGATCATCCACTGTGATCTGAAGGCAGAAAACG
TTCTGCTTGATGGCGACTTCCACGTGAAGATTTCAGACTTTGGCCTTTCC
AAATGGAAGATGCAATCCCGCATTGTGACTGAAACCAGTCCTTTGGGCGG
CACCCCCACACATGTTCCACCGGAGTTCTTTGACACGGACGGCGATCCAA
CCGACAAGTCTGATGTGTACAGCTTTGGGGTGCTGATGTGGGAGATTGCA
ACCCGAAGAAGGCCCTATCGAGATACTGAAGGCAGATTGAATATCGGCAG
GCCTCTCAGTTGTTACGTGACAGGCGGAGGGCGGCCGGACATGTCACTGG
TCCCCACAGGCGTGCCGGGTGTAGACACCGTTAACCAACTGATGCAGGCA
TGCTGGAGTCAGAGTCCAGAGGATAGGGAAGAAAGTGGTCGACAGCACAG
CGGTCAGGAATCAGAAGATAGTGGTGCTGTCGGTGATTATAAATTTGATG
ACCTGAACAGCAACTATCCCAGCGTGACAGTTGATAGCAGGCTCCCCATC
ATCGACTTTGAGCAGCTCGACTTCCCGGAGAGGTCCCTTCTTGGCCAAGG
AGCATTCGGCTCTGTGAAGAAAGCCATCCATCGAAGCTGGAGACAGGAAG
TAGCTGTCAAAAGTCTGACCTTCGAAATATATGGAACAAGTGAGCAAGAG
CTGCTGTACTCTGAGGCGAGGAAGCTGAACGTGGGGAGTCGATCAGACTA
CATCATCCGTCTGTTGGGCATCTGCCTCGAGCCACATTTCGCCATCGTGA
TGCCCTTCATGGAGAACGGCTCGCTATCAGAGCTGCTGCAGGATATCGAC
GTGCCATCCGCTCTGAGGTGGAGAATGGCGCGGGAGATAGCCATGGGGAT
GACTTTCCTGCACTGCCAGAACCCGCAGATCATCCACTGTGATCTGAAGG
CAGAAAACGTTCTGCTTGATGGCGACTTCCACGTGAAGATTTCAGACTTT
GGCCTTTCCAAATGGAAGATGCAATCCCGCATTGTGACTGAAACCAGTCC
TTTGGGCGGCACCCCCACACATGTTCCACCGGAGTTCTTTGACACGGACG
GCGATCCAACCGACAAGTCTGATGTGTACAGCTTTGGGGTGCTGATGTGG
GAGATTGCAACCCGAAGAAGGCCCTATCGAGATACTGAAGGCAGATTGAA
TATCGGCAGGCCTCTCAGTTGTTACGTGACAGGCGGAGGGCGGCCGGACA
TGTCACTGGTCCCCACAGGCGTGCCGGGTGTAGACACCGTTAACCAACTG
ATGCAGGCATGCTGGAGTCAGAGTCCAGAGGATAGGGAAGAAAGTGGTCG
ACAGCACAGCGGTCAGGAATCAGAAGATAGTGGTGCTGTCGGTGATTATA
AATTTGATGACCTGAACAGCAACTATCCCAGCGTGACAGTTGATAGCAGG
CTCCCCATCATCGACTTTGAGCAGCTCGACTTCCCGGAGAGGTCCCTTCT
TGGCCAAGGAGCATTCGGCTCTGTGAAGAAAGCCATCCATCGAAGCTGGA
GACAGGAAGTAGCTGTCAAAAGTCTGACCTTCGAAATATATGGAACAAGT
GAGCAAGAGCTGCTGTACTCTGAGGCGAGGAAGCTGAACGTGGGGAGTCG
ATCAGACTACATCATCCGTCTGTTGGGCATCTGCCTCGAGCCACATTTCG
CCATCGTGATGCCCTTCATGGAGAACGGCTCGCTATCAGAGCTGCTGCAG
GATATCGACGTGCCATCCGCTCTGAGGTGGAGAATGGCGCGGGAGATAGC
CATGGGGATGACTTTCCTGCACTGCCAGAACCCGCAGATCATCCACTGTG
ATCTGAAGGCAGAAAACGTTCTGCTTGATGGCGACTTCCACGTGAAGATT
TCAGACTTTGGCCTTTCCAAATGGAAGATGCAATCCCGCATTGTGACTGA
AACCAGTCCTTTGGGCGGCACCCCCACACATGTTCCACCGGAGTTCTTTG
ACACGGACGGCGATCCAACCGACAAGTCTGATGTGTACAGCTTTGGGGTG
CTGATGTGGGAGATTGCAACCCGAAGAAGGCCCTATCGAGATACTGAAGG
CAGATTGAATATCGGCAGGCCTCTCAGTTGTTACGTGACAGGCGGAGGGC
GGCCGGACATGTCACTGGTCCCCACAGGCGTGCCGGGTGTAGACACCGTT
AACCAACTGATGCAGGCATGCTGGAGTCAGAGTCCAGAGGATAGGGAAGA
AAGTGGTCGACAGCACAGCGGTCAGGAATCAGAAGATAGTGGTGCTGTCG
GTGATTATAAATTTGATGACCTGAACAGCAACTATCCCAGCGTGACAGTT
GATAGCAGGCTCCCCATCATCGACTTTGAGCAGCTCGACTTCCCGGAGAG
GTCCCTTCTTGGCCAAGGAGCATTCGGCTCTGTGAAGAAAGCCATCCATC
GAAGCTGGAGACAGGAAGTAGCTGTCAAAAGTCTGACCTTCGAAATATAT
GGAACAAGTGAGCAAGAGCTGCTGTACTCTGAGGCGAGGAAGCTGAACGT
GGGGAGTCGATCAGACTACATCATCCGTCTGTTGGGCATCTGCCTCGAGC
CACATTTCGCCATCGTGATGCCCTTCATGGAGAACGGCTCGCTATCAGAG
CTGCTGCAGGATATCGACGTGCCATCCGCTCTGAGGTGGAGAATGGCGCG
GGAGATAGCCATGGGGATGACTTTCCTGCACTGCCAGAACCCGCAGATCA
TCCACTGTGATCTGAAGGCAGAAAACGTTCTGCTTGATGGCGACTTCCAC
GTGAAGATTTCAGACTTTGGCCTTTCCAAATGGAAGATGCAATCCCGCAT
TGTGACTGAAACCAGTCCTTTGGGCGGCACCCCCACACATGTTCCACCGG
AGTTCTTTGACACGGACGGCGATCCAACCGACAAGTCTGATGTGTACAGC
TTTGGGGTGCTGATGTGGGAGATTGCAACCCGAAGAAGGCCCTATCGAGA
TACTGAAGGCAGATTGAATATCGGCAGGCCTCTCAGTTGTTACGTGACAG
GCGGAGGGCGGCCGGACATGTCACTGGTCCCCACAGGCGTGCCGGGTGTA
GACACCGTTAACCAACTGATGCAGGCATGCTGGAGTCAGAGTCCAGAGGA
TAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000003 | genome | Sc0000003:5746271..5748122 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96221_cuf2 |
| Biotype | protein_coding |
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