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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96216_cuf20 >transcript:BL96216_cuf20-protein ID=transcript:BL96216_cuf20-protein|Name=transcript:BL96216_cuf20|organism=Branchiostoma lanceolatum|type=polypeptide|length=269bp
EPTAGVVEDINPDPQAPVYDYLQPADADFQTTATTLSARWSGFLHEHQDI
SYQVAAGTSAGATDVVGFTSVGQAVEWTRTGLSLSSFQTYYITVKASNSI
GDTTVTSDGITVLQDGDALQGAEVIDGLECSNQHDEIYQIQTIRSACYAT
SPSIYQTSKTAVAAHWSIPPANQDHVTHVQWSIVQEVEGEETVVQDYVNL
GMATHGLAVDQDLYLSPAVTYKSKVLFCHQAGCFPPVYSSGFLVAPDPPF
PGYLHVTSPYPDSGTRSAD Run BLAST on NCBI mRNA from alignment at Sc0000003:8631680..8633783+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96216_cuf20 ID=transcript:BL96216_cuf20|Name=transcript:BL96216_cuf20|organism=Branchiostoma lanceolatum|type=mRNA|length=2104bp|location=Sequence derived from alignment at Sc0000003:8631680..8633783+ (Branchiostoma lanceolatum)
GCGAGCCTACTGCTGGTGTGGTAGAGGATATCAACCCTGACCCACAGGCT
CCTGTCTACGACTATCTTCAGGTATCAAAAACATTGTGGAGTGTATCTTA
GTCCTAAGTTTTAAAGAAAACAAAGCAAAATAACTGACAATATATAAGTT
AAACATGTAGTTGTAGACTAAGGCGACGTTTATGTTTTTCAGTGTAGTTG
TTGTTTGTCTGTCCAAATATAACCATTATGACAGTTTTGCTAAGCATTCT
ACATCTTGTTTAGCCGGCAGATGCAGACTTTCAGACAACCGCTACCACAT
TGTCGGCTCGCTGGTCCGGCTTCCTACACGAACATCAGGATATCTCGTAC
CAGGTGGCGGCCGGGACGTCAGCAGGTGCCACGGATGTGGTCGGGTTTAC
TTCTGTTGGACAAGCCGTGGAGTGGACCAGGACCGGGCTGAGCCTTTCGT
CTTTCCAGGTTGGGATGTTTAATAAAAGGATTTAACTACATTCTAACACA
ACACCTCTGGTCTTCCACGGGATAAAAAAAGACCCGAATGCACAAGATAC
GTCACCCCTGGAAGTATGACGTACCATCGGGTCAAAGGTCGTTGAAAGTC
GGTACCGGCCCCCCTTTTAGCTCCCCATTTTTTTCATGGAAGTTTGAAGA
CATGTTTGTTAAAGACGTGATGTTTAATTGGTACATTCCTTTTACTTAGT
CACTTTTTTCACTTAGTTACAAAATGGAAGTTAAATGAGGCTTCCTAAAT
GTAGGTGAAACTGACTATTTGCTCCTGTTGATTTTTCAGACTTACTACAT
CACTGTGAAGGCCAGTAACAGTATCGGGGACACAACTGTCACCTCAGATG
GAATAACGGTTCTGCAGGATGGAGACGCTCTTCAAGGAGCAGAGGTCATC
GACGGGCTGGAATGTTCTAGTAAGTATTGTCTATGTTTTTGTTTATGTTT
ATAACGATAGAATAAGAATAGTGATATACGGCGAAAACTCCCTTCAAATA
TGTGTGAAGATCATCAATGTATTGCATTATATGGTAAGGAGCATGGTTCT
ACCTGTATGATTAGTATGTGGATGTTTATAGCATAGTAACTATCACATGA
ACAATCTAACAATCAACAATAGCATCAACCTTTTCATTTTAACAAATTAA
CATTCTGTTGTCTAATATTTCAGATCAGCACGATGAAATATATCAAATAC
AGGTACGTTTTTTTTACTTGATTTGTCCTTGGAGGCGAGAGCAGAATAAG
ATTTGTGTTGAACTTCATATTATTTATGTATAGTATTGTTAATTACTTTT
AAAGATAGAGGTCATTTAATAAAGGTCTACAAGCTTTACGTCAGCAAGCT
TTACATTTGTGTTTTCAGACTATCCGTTCTGCCTGCTATGCAACATCGCC
GTCAATCTACCAGACGTCGAAGACAGCTGTGGCTGCCCATTGGTCCATCC
CACCTGCCAATCAAGACCACGTGACACACGTCCAATGGTCGATCGTACAG
GAGGTAGAGGGGGAGGAGACCGTGGTGCAGGACTACGTGAACCTGGGTAT
GGCGACACACGGGCTGGCTGTAGATCAAGACCTGTACCTCTCTCCCGCTG
TCACCTACAAATCTAAAGTCTTGTTCTGCCATCAGGCTGGATGTTTTCCT
CCAGGTACGGCAGCATCTACTGTATCATAATGGATAAAATTATTATTTTA
GAACGGTTGGTAATCTGTAACAGCCCCCGTCCCGGCTCAATGCAGGTGTG
TCCAGTCTACTTAGTGTATTTTAACATTTTCTTAGGCATTATAAAGTCAG
TCTAACTATAGTTTACAGGAAAGATTGAACTATAAGGTACTCTTCTTTGT
GTTGATATGCCATCTTGCGTTGCTTCAAAGTTCATTGTTGGTCTACATAT
TTAACCTTTAATCCGAATTGTAAGCTACTATTAAGTAAGTAACGATAAAG
TCTCATTCTTCACCAAGAGACTTTATGATGTTCTCATTATGCAATTTTTT
TTAGTCTACAGTTCAGGATTCCTGGTGGCTCCTGATCCGCCATTTCCCGG
ATATCTTCACGTCACCAGTCCGTATCCAGATTCGGGCACTAGAAGTGCTG
ACGT Coding sequence (CDS) from alignment at Sc0000003:8631680..8633783+ >transcript:BL96216_cuf20 ID=transcript:BL96216_cuf20|Name=transcript:BL96216_cuf20|organism=Branchiostoma lanceolatum|type=CDS|length=4842bp|location=Sequence derived from alignment at Sc0000003:8631680..8633783+ (Branchiostoma lanceolatum)
GAGCCTACTGCTGGTGTGGTAGAGGATATCAACCCTGACCCACAGGCTCC
TGTCTACGACTATCTTCAGCCGGCAGATGCAGACTTTCAGACAACCGCTA
CCACATTGTCGGCTCGCTGGTCCGGCTTCCTACACGAACATCAGGATATC
TCGTACCAGGTGGCGGCCGGGACGTCAGCAGGTGCCACGGATGTGGTCGG
GTTTACTTCTGTTGGACAAGCCGTGGAGTGGACCAGGACCGGGCTGAGCC
TTTCGTCTTTCCAGACTTACTACATCACTGTGAAGGCCAGTAACAGTATC
GGGGACACAACTGTCACCTCAGATGGAATAACGGTTCTGCAGGATGGAGA
CGCTCTTCAAGGAGCAGAGGTCATCGACGGGCTGGAATGTTCTAATCAGC
ACGATGAAATATATCAAATACAGACTATCCGTTCTGCCTGCTATGCAACA
TCGCCGTCAATCTACCAGACGTCGAAGACAGCTGTGGCTGCCCATTGGTC
CATCCCACCTGCCAATCAAGACCACGTGACACACGTCCAATGGTCGATCG
TACAGGAGGTAGAGGGGGAGGAGACCGTGGTGCAGGACTACGTGAACCTG
GGTATGGCGACACACGGGCTGGCTGTAGATCAAGACCTGTACCTCTCTCC
CGCTGTCACCTACAAATCTAAAGTCTTGTTCTGCCATCAGGCTGGATGTT
TTCCTCCAGTCTACAGTTCAGGATTCCTGGTGGCTCCTGATCCGCCATTT
CCCGGATATCTTCACGTCACCAGTCCGTATCCAGATTCGGGCACTAGAAG
TGCTGACGAGCCTACTGCTGGTGTGGTAGAGGATATCAACCCTGACCCAC
AGGCTCCTGTCTACGACTATCTTCAGCCGGCAGATGCAGACTTTCAGACA
ACCGCTACCACATTGTCGGCTCGCTGGTCCGGCTTCCTACACGAACATCA
GGATATCTCGTACCAGGTGGCGGCCGGGACGTCAGCAGGTGCCACGGATG
TGGTCGGGTTTACTTCTGTTGGACAAGCCGTGGAGTGGACCAGGACCGGG
CTGAGCCTTTCGTCTTTCCAGACTTACTACATCACTGTGAAGGCCAGTAA
CAGTATCGGGGACACAACTGTCACCTCAGATGGAATAACGGTTCTGCAGG
ATGGAGACGCTCTTCAAGGAGCAGAGGTCATCGACGGGCTGGAATGTTCT
AATCAGCACGATGAAATATATCAAATACAGACTATCCGTTCTGCCTGCTA
TGCAACATCGCCGTCAATCTACCAGACGTCGAAGACAGCTGTGGCTGCCC
ATTGGTCCATCCCACCTGCCAATCAAGACCACGTGACACACGTCCAATGG
TCGATCGTACAGGAGGTAGAGGGGGAGGAGACCGTGGTGCAGGACTACGT
GAACCTGGGTATGGCGACACACGGGCTGGCTGTAGATCAAGACCTGTACC
TCTCTCCCGCTGTCACCTACAAATCTAAAGTCTTGTTCTGCCATCAGGCT
GGATGTTTTCCTCCAGTCTACAGTTCAGGATTCCTGGTGGCTCCTGATCC
GCCATTTCCCGGATATCTTCACGTCACCAGTCCGTATCCAGATTCGGGCA
CTAGAAGTGCTGACGAGCCTACTGCTGGTGTGGTAGAGGATATCAACCCT
GACCCACAGGCTCCTGTCTACGACTATCTTCAGCCGGCAGATGCAGACTT
TCAGACAACCGCTACCACATTGTCGGCTCGCTGGTCCGGCTTCCTACACG
AACATCAGGATATCTCGTACCAGGTGGCGGCCGGGACGTCAGCAGGTGCC
ACGGATGTGGTCGGGTTTACTTCTGTTGGACAAGCCGTGGAGTGGACCAG
GACCGGGCTGAGCCTTTCGTCTTTCCAGACTTACTACATCACTGTGAAGG
CCAGTAACAGTATCGGGGACACAACTGTCACCTCAGATGGAATAACGGTT
CTGCAGGATGGAGACGCTCTTCAAGGAGCAGAGGTCATCGACGGGCTGGA
ATGTTCTAATCAGCACGATGAAATATATCAAATACAGACTATCCGTTCTG
CCTGCTATGCAACATCGCCGTCAATCTACCAGACGTCGAAGACAGCTGTG
GCTGCCCATTGGTCCATCCCACCTGCCAATCAAGACCACGTGACACACGT
CCAATGGTCGATCGTACAGGAGGTAGAGGGGGAGGAGACCGTGGTGCAGG
ACTACGTGAACCTGGGTATGGCGACACACGGGCTGGCTGTAGATCAAGAC
CTGTACCTCTCTCCCGCTGTCACCTACAAATCTAAAGTCTTGTTCTGCCA
TCAGGCTGGATGTTTTCCTCCAGTCTACAGTTCAGGATTCCTGGTGGCTC
CTGATCCGCCATTTCCCGGATATCTTCACGTCACCAGTCCGTATCCAGAT
TCGGGCACTAGAAGTGCTGACGAGCCTACTGCTGGTGTGGTAGAGGATAT
CAACCCTGACCCACAGGCTCCTGTCTACGACTATCTTCAGCCGGCAGATG
CAGACTTTCAGACAACCGCTACCACATTGTCGGCTCGCTGGTCCGGCTTC
CTACACGAACATCAGGATATCTCGTACCAGGTGGCGGCCGGGACGTCAGC
AGGTGCCACGGATGTGGTCGGGTTTACTTCTGTTGGACAAGCCGTGGAGT
GGACCAGGACCGGGCTGAGCCTTTCGTCTTTCCAGACTTACTACATCACT
GTGAAGGCCAGTAACAGTATCGGGGACACAACTGTCACCTCAGATGGAAT
AACGGTTCTGCAGGATGGAGACGCTCTTCAAGGAGCAGAGGTCATCGACG
GGCTGGAATGTTCTAATCAGCACGATGAAATATATCAAATACAGACTATC
CGTTCTGCCTGCTATGCAACATCGCCGTCAATCTACCAGACGTCGAAGAC
AGCTGTGGCTGCCCATTGGTCCATCCCACCTGCCAATCAAGACCACGTGA
CACACGTCCAATGGTCGATCGTACAGGAGGTAGAGGGGGAGGAGACCGTG
GTGCAGGACTACGTGAACCTGGGTATGGCGACACACGGGCTGGCTGTAGA
TCAAGACCTGTACCTCTCTCCCGCTGTCACCTACAAATCTAAAGTCTTGT
TCTGCCATCAGGCTGGATGTTTTCCTCCAGTCTACAGTTCAGGATTCCTG
GTGGCTCCTGATCCGCCATTTCCCGGATATCTTCACGTCACCAGTCCGTA
TCCAGATTCGGGCACTAGAAGTGCTGACGAGCCTACTGCTGGTGTGGTAG
AGGATATCAACCCTGACCCACAGGCTCCTGTCTACGACTATCTTCAGCCG
GCAGATGCAGACTTTCAGACAACCGCTACCACATTGTCGGCTCGCTGGTC
CGGCTTCCTACACGAACATCAGGATATCTCGTACCAGGTGGCGGCCGGGA
CGTCAGCAGGTGCCACGGATGTGGTCGGGTTTACTTCTGTTGGACAAGCC
GTGGAGTGGACCAGGACCGGGCTGAGCCTTTCGTCTTTCCAGACTTACTA
CATCACTGTGAAGGCCAGTAACAGTATCGGGGACACAACTGTCACCTCAG
ATGGAATAACGGTTCTGCAGGATGGAGACGCTCTTCAAGGAGCAGAGGTC
ATCGACGGGCTGGAATGTTCTAATCAGCACGATGAAATATATCAAATACA
GACTATCCGTTCTGCCTGCTATGCAACATCGCCGTCAATCTACCAGACGT
CGAAGACAGCTGTGGCTGCCCATTGGTCCATCCCACCTGCCAATCAAGAC
CACGTGACACACGTCCAATGGTCGATCGTACAGGAGGTAGAGGGGGAGGA
GACCGTGGTGCAGGACTACGTGAACCTGGGTATGGCGACACACGGGCTGG
CTGTAGATCAAGACCTGTACCTCTCTCCCGCTGTCACCTACAAATCTAAA
GTCTTGTTCTGCCATCAGGCTGGATGTTTTCCTCCAGTCTACAGTTCAGG
ATTCCTGGTGGCTCCTGATCCGCCATTTCCCGGATATCTTCACGTCACCA
GTCCGTATCCAGATTCGGGCACTAGAAGTGCTGACGAGCCTACTGCTGGT
GTGGTAGAGGATATCAACCCTGACCCACAGGCTCCTGTCTACGACTATCT
TCAGCCGGCAGATGCAGACTTTCAGACAACCGCTACCACATTGTCGGCTC
GCTGGTCCGGCTTCCTACACGAACATCAGGATATCTCGTACCAGGTGGCG
GCCGGGACGTCAGCAGGTGCCACGGATGTGGTCGGGTTTACTTCTGTTGG
ACAAGCCGTGGAGTGGACCAGGACCGGGCTGAGCCTTTCGTCTTTCCAGA
CTTACTACATCACTGTGAAGGCCAGTAACAGTATCGGGGACACAACTGTC
ACCTCAGATGGAATAACGGTTCTGCAGGATGGAGACGCTCTTCAAGGAGC
AGAGGTCATCGACGGGCTGGAATGTTCTAATCAGCACGATGAAATATATC
AAATACAGACTATCCGTTCTGCCTGCTATGCAACATCGCCGTCAATCTAC
CAGACGTCGAAGACAGCTGTGGCTGCCCATTGGTCCATCCCACCTGCCAA
TCAAGACCACGTGACACACGTCCAATGGTCGATCGTACAGGAGGTAGAGG
GGGAGGAGACCGTGGTGCAGGACTACGTGAACCTGGGTATGGCGACACAC
GGGCTGGCTGTAGATCAAGACCTGTACCTCTCTCCCGCTGTCACCTACAA
ATCTAAAGTCTTGTTCTGCCATCAGGCTGGATGTTTTCCTCCAGTCTACA
GTTCAGGATTCCTGGTGGCTCCTGATCCGCCATTTCCCGGATATCTTCAC
GTCACCAGTCCGTATCCAGATTCGGGCACTAGAAGTGCTGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000003 | genome | Sc0000003:8631680..8633783 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96216_cuf20 |
| Biotype | protein_coding |
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