|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96211_cuf2 >transcript:BL96211_cuf2-protein ID=transcript:BL96211_cuf2-protein|Name=transcript:BL96211_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=125bp
MQLLRTIVVLTQSLKGLPDDVMMTMKLLYYDDVTPSDYQPPGFKPADSEG
FLYNCEPMNIKVGDVSTQWHTVKLRIKTDSSQFEVRDQEGVPAGTELADT
DDRNSLQGGAVISTAGLDGEDTEEP Run BLAST on NCBI mRNA from alignment at Sc0000003:4989021..4991232+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96211_cuf2 ID=transcript:BL96211_cuf2|Name=transcript:BL96211_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2212bp|location=Sequence derived from alignment at Sc0000003:4989021..4991232+ (Branchiostoma lanceolatum)
TCTTGAAGCAGTTTTGTAGCGACCTTCGTAACATTTTTTATTTTTAAAAA
TTGAACAATCATTTTCTGATGGCAGTATTCAGTTGTTGTTTTTTTCTACT
CATCGCCCAGCGCGAATTTAGAACCACCGCGGATTTTCCATTTGCCTGAA
ACCGCGGATTTTAGGCCCCGCGGATCTAAGTAGACTTACAGTATATCCAT
GATTTGATTGACAGGAATGACAAGCAGCTGGCATCAGCCTACAGTGCTGC
TGAGACAAAGAAAGCGACGATGCAGCTGCTACGCACCATCGTGGTGCTGA
CCCAGTCCCTCAAGGGTCTGCCTGATGATGTCATGATGACCATGAAGCTG
CTCTACTATGATGATGGTAGGTTTAACTTGACCTGACCTGACCTGACCTG
TCCTGACCCGACCTGACTTTATTTGGATCCACAATTAGCTTGACATTTCT
GTTAGCTATTCTTGCTGTGGTCCTTTACATGTAATACGTCAATACAAATC
ACATAACACAGATGTGTTATGACAGACAGGGTAACCACAGAACAATCATA
CTATTACTACGCTGCTACATTCCTATTTTCTGCTTTCCTCGAGTACTTGT
TGACGTGACTTCAATGTGTCAACTGTATCCACACATGACTGTTTTGGTGT
TTGGTATATGGGATGTGATTGTATTGTATTGTATTGTAATGAGATGCTAA
CAAATGTTACATTGAAACACTAAACTGTTTTTTTTTTTTTCACTCTTGCC
CCTTTCATTCCCTTTTATTCCTCTTTCAAAGAATATAACAAAGAAGATTC
CTTTAACTATATGTCTGCCCCATCTTTAAGCCATTTCTGATAACACTTCC
TCTCCTGCAAACTTATCCCCCCCCCCTCAACCCCCTCCCCAGTCACCCCC
TCAGACTACCAGCCCCCTGGCTTCAAACCTGCCAGGGACTGATAAAATCT
GGTCTATGTGGACAGGTGATCACTATACTCAATAGACAGGATTCTTAATG
TTCGTGTCAATGAGAAAAAGCATCCAAAGGACCACCAAAAAGTGGTCACA
TTGGCCAGGTAGTCTTTACGTAGAGGTGGCCACTTGTCCAAATTTGATTG
TATAATGAAGAACCTTTCTCTATCTATATGTCTGATCTATCCTTAAGCCA
CTATCCCCCCTGCACACTTAACCCCCCTCAACCCCCTCTCCAGTGACCCC
CTCAGACTACCAGCCCCCCGGCTTCAAACCAGCGGACTCTGAAGGTTTCC
TGTACAACTGTGAGCCCATGAACATCAAGGTGGGAGATGTCTCCACGCAG
TGGCATACCGTCAAGCTGCGTATCAAGACAGACAGCTCACAGTTTGAGGT
AACCTCTATTTGTGGTATTTTCTGCAGAGTTATGTCAATCAGGATATAAT
CAAACTATTTATGGCATACAAAATGACTAATAAACTGGTGGAGGCACCCG
ACAACTACAGACCAGGCTTTCAGCTAGATGTGCAAAAGCTAGGTGTGACA
GGTTGATCAGTAATATAACCAGTTGCTGCTGTGTCGCGTGCCTGTGAAGC
TGCATGGTGTGTTACGCCAAAGGGTGCTTTACAAAGGGTGCTAAACAGAT
ACTGAAACACGTTGTTGAAGGTTAGACATCCAGGTAATAAGATACGCCAA
AAATACACATACTCACTGAGCAACTGGATAAAATTTTGAAACAGACGTTT
CAGACAGCATCTGCTATCTTTCGTCAGATACTGAAACAGATTTAATTGTG
GGCTCAAAATACTGTGTGCATATGTACTTTTATACACACAAAGTTGTAGC
TGTTAATTGGCCGTGCACCTAATTTTTGACTATGAGTGCATTGGTGCACC
TAGATATTTGAATGTGTAGGGCACAGATGCAAATAGCACTATTTTGAACC
CTAAGGCCACACCAATTTAATTTGTTGGTTTAATAACGGATTTTTATTTT
TAAAAAAAATTTTAGCCAGCCTTCTGTTTTCATGATTTTTTTTTCCAATT
TTTTTTTAAAAATGAAAATCTGTTGATCAAGAAATTAAGATGGTGTGGCC
TAAGGCTTATTGTAATAAGTTCTGCTGTGCTGTGTTCAGGTGAGGGATCA
GGAGGGTGTGCCGGCGGGAACAGAGCTTGCTGATACTGACGATAGGAACA
GCCTACAGGGAGGAGCTGTCATCTCTACAGCAGGGCTGGACGGGGAGGAC
ACAGAGGAACCC Coding sequence (CDS) from alignment at Sc0000003:4989021..4991232+ >transcript:BL96211_cuf2 ID=transcript:BL96211_cuf2|Name=transcript:BL96211_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1125bp|location=Sequence derived from alignment at Sc0000003:4989021..4991232+ (Branchiostoma lanceolatum)
ATGCAGCTGCTACGCACCATCGTGGTGCTGACCCAGTCCCTCAAGGGTCT
GCCTGATGATGTCATGATGACCATGAAGCTGCTCTACTATGATGATGTGA
CCCCCTCAGACTACCAGCCCCCCGGCTTCAAACCAGCGGACTCTGAAGGT
TTCCTGTACAACTGTGAGCCCATGAACATCAAGGTGGGAGATGTCTCCAC
GCAGTGGCATACCGTCAAGCTGCGTATCAAGACAGACAGCTCACAGTTTG
AGGTGAGGGATCAGGAGGGTGTGCCGGCGGGAACAGAGCTTGCTGATACT
GACGATAGGAACAGCCTACAGGGAGGAGCTGTCATCTCTACAGCAGGGCT
GGACGGGGAGGACACAGAGGAACCCATGCAGCTGCTACGCACCATCGTGG
TGCTGACCCAGTCCCTCAAGGGTCTGCCTGATGATGTCATGATGACCATG
AAGCTGCTCTACTATGATGATGTGACCCCCTCAGACTACCAGCCCCCCGG
CTTCAAACCAGCGGACTCTGAAGGTTTCCTGTACAACTGTGAGCCCATGA
ACATCAAGGTGGGAGATGTCTCCACGCAGTGGCATACCGTCAAGCTGCGT
ATCAAGACAGACAGCTCACAGTTTGAGGTGAGGGATCAGGAGGGTGTGCC
GGCGGGAACAGAGCTTGCTGATACTGACGATAGGAACAGCCTACAGGGAG
GAGCTGTCATCTCTACAGCAGGGCTGGACGGGGAGGACACAGAGGAACCC
ATGCAGCTGCTACGCACCATCGTGGTGCTGACCCAGTCCCTCAAGGGTCT
GCCTGATGATGTCATGATGACCATGAAGCTGCTCTACTATGATGATGTGA
CCCCCTCAGACTACCAGCCCCCCGGCTTCAAACCAGCGGACTCTGAAGGT
TTCCTGTACAACTGTGAGCCCATGAACATCAAGGTGGGAGATGTCTCCAC
GCAGTGGCATACCGTCAAGCTGCGTATCAAGACAGACAGCTCACAGTTTG
AGGTGAGGGATCAGGAGGGTGTGCCGGCGGGAACAGAGCTTGCTGATACT
GACGATAGGAACAGCCTACAGGGAGGAGCTGTCATCTCTACAGCAGGGCT
GGACGGGGAGGACACAGAGGAACCC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000003 | genome | Sc0000003:4989021..4991232 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96211_cuf2 |
| Biotype | protein_coding |
|
