|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96208_cuf0 >transcript:BL96208_cuf0-protein ID=transcript:BL96208_cuf0-protein|Name=transcript:BL96208_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=192bp
MGGGTQTGTAITYMKDNSQWRPNVAKIAIVVTDGQSGDDVQVPSTQAQNA
GITMHAIGVGGNVDQTELAAIASTAQYVTTVADYDALDAQMAQLTASVCD
EASNECELPVLQYHTCVQEALSTCYSQTGTREVSRARRSADTPITLRHQA
PVVDSRGMLAVVTVTVGVVFVAALAFTFKMKQLTKGKANGSA Run BLAST on NCBI mRNA from alignment at Sc0000003:7385218..7389271- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96208_cuf0 ID=transcript:BL96208_cuf0|Name=transcript:BL96208_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4054bp|location=Sequence derived from alignment at Sc0000003:7385218..7389271- (Branchiostoma lanceolatum)
TTAAGTCGGCGTGATTCAGTACAGCTCTTCTGTGAAAGAGGAGTTCTCCC
TGAATGCCCACTGGACCAATACTGCTGTTCTCAACGCCATCGACAACATT
GTGTACATGGGAGGAGGCACGCAAACTGGAACAGCCATCACGTACATGAA
GGACAACAGTCAATGGAGACCGAACGTTGCCAAAATCGCCATCGTGGTGA
CTGACGGTCAATCTGGCGACGATGTTCAAGGTATCGTTGCAAAGAACTTC
GTTAATTACTCTAAAATGCTCGTGAAGTTTGATACCTGATACGAATTTGG
ATAGCTGAAATGTTGACATTTCTGGGGGATAGAATCGAGACTACCTGCCA
TTGTGTTGTGTAATGCCCTGTTTTTTTTTCTTCCTTTTTTTTGGTTGGCG
GGCCAGAGCTAGCTGCTAAATTGATAAGGAAAGGATCATGAAATTGTCAC
AATGACCGCCTTGTTGTGAAGTACATGCAAAAGAAATAAGTCAAACTAAA
AGAAACAAAAACAAACTTTCTTCTGGTAAAGGCGAGAATGTACCTGACAG
TGTGTTACCTACATTATTGGTACGCTTAGTGTAAGACTTACAGTTTCATA
TCTCTTAGTGACTTGATGCAAGTTTGAATATACGCCGTTTAGATGTACAC
ATTATTTCTCATTACACTTTACTTACATGTCTTAGTTCCTGTTTAAGTTC
ACACCATACAAAATGATCATAATTTCCAACACAAACACTCTATACCGCAA
ACGTCAGCTTTTTCAAAAGCACTTGTTTTATTTCAACACTGTTCTTGCTT
AGTCCCATCCACCCAGGCGCAGAATGCCGGCATCACTATGCATGCCATCG
GTGTTGGAGGAAATGTCGACCAGACCGAGTTGGCCGCTATCGCCAGTACC
GCACAGTACGTCACCACCGTGGCAGACTACGACGCGCTGGACGCCCAGAT
GGCCCAGCTGACCGCCTCTGTTTGTGACGGTATGGTAGTCTCCAAGCAGA
CCTACGGGTTGGCAAAGACCGTATCCAACAGGCAGAAGGAGTTTTCATAG
CCAACCTTAGATTGCACTATAAGCTCCTTCTTCCAGTTGGATACGGTCTT
TGCAATCTATTGAGTCTGGTTGGAGACTAACGGTATGGGGGTAACCACTT
TCTTAGGGCACACCGATTTCATTATACGGATGGCATACATTGAGAAGCCC
AAAAACTGCGTGCGAAATTTCAGTTTATTTCAATCTGCAGTTATTCCATG
TCTTTGATAGTAGTCTTTGTTAAAGAGTCTTCAACTTGATTTTGCCAACT
TGCTCACGTTATGCAGTCATAACATTATTCAAATATGCCATGGGATCAGG
TTCAGACATTCTAAGTTCGGACCTAAACCTAAACCTCAAATCCGGATCTG
AACCTAAACGTGGGTTAAGGTACGCATCCCAAATTCATACAGGATACTTG
ATTTGATTCAGACTAAACTTCTTCCATTGTTTTTAAAGCTTTTCATGGGA
AGGGGCGTAAAGTGTCGGTCAATATTTTGTTTCGGGGCATTAACTCTATT
ATAGTGAAAAGTATAATCTTGGATATCGTTAGTAAGATTCGACCACTTCC
TCTCTCATACCCGCTCTCTCGTATAGATAATGCCTTCATGTAGTTTGAAA
TGGAGCATTGTAGAACCTAACCATTGAATAGCATAGAACCTCCCTGTAGC
TTTTAGTAGTTTGACATAAGTAGCCAGTAGTACTTTCTTGTTTGCCTTAC
ATTGTACCTGTTACAATCGTTGTGCAATAAACTTTGACTTGACTTGACTC
ATGATAGGGCGTCCCAAATTCTACCCCTTGTCCAGATTTGTCAATAACAG
TAAAGCCACAGTGTCCACATTTTCCAACACCATCACATCCCGGGGAGACT
AACATAGACAAGTACTAATTATAACACTCCCTTTTCTAAACGTATCCAGA
AGCGTCCAACGAGTGCGAGCTGCCTGTGCTGCAGTACCACACCTGTGTGC
AAGAGGCGCTCTCCACCTGCTACTCCCAGACCGGTACACGTGAGGTGAGC
AGGGCAAGGAGGAGTGCGGACACGCCCATCACCCTCCGTCACCAAGGTAA
CGTCATTTTTTAACGAACTCGCTCAGTGCAAGGCCGTAGCTCATCAAGCA
CTGAACTAATTTTTACTGTAGCAGCATCTCTTCACCCTAGGTCAGAAACA
TCAATGCTCGAGACAAGCATGACTTCACTGACCCATTAGGAGAAGCAGGG
GTTACGAAGGCTGCTCGGGAAATTCCCTACCCCATTTAGGCCGGAATGTT
TTGATCCACTCACACCGGGGCATGCCCCTACTCTTTTTCGAAAGATGTGG
TGGGTTCTTTTACGTGCTCAAGGTGTGACTCTCCTCAAACTCGGGACCTC
CATTTAACGTCTAATCCGAGGGACATCAGGAGGGGCAATTATGCAATGCT
CTGACTTTCTCTCAAGATGTTCTGTGCGTTGTAGGAATGATCCTAATTTG
TGTTGCTAGTTGACTAGAATTTGATGACACACAAGAAGGTGCGTCTGCAT
CTATGGTGAGACAGCCATGTGCCTGTGGGTGTGCAATAATGTTTTCTGTG
GAGGTACAGCCATGTGTCTGTGGTGGTACAGTAATGTCTTACATGGTGGT
GAAGGAATGTTTCTGTGGAGGTACATCCATGTGTCTGTGATTGTACAGTA
ATGATTTTATGGAGGTACAGCCAAGTGTCTGTGGATGTACCGTTTCATGT
GGTGGTACAGTAATGCCTTTGATGGTGGTGAAGTACAGCCATGTGTCTAT
CATTGTACAGGAATGTTTTCGATGGTGGTACAGTAATGTGCCTTTTGATG
TATAGTTTACTGTAACGATGCTTCCTGTGGGTGTACAGTCATGTTTTTTG
TGGGTGTACAGTAATATCTTCTATGGATGTCTCTTCCAGCCCCTGTGGTG
GACAGCCGGGGTATGCTGGCCGTGGTGACCGTCACTGTGGGTGTCGTCTT
TGTGGCCGCCTTGGCATTCACCTTCAAGATGAAGCAGCTGACCAAGGGCA
AGGCCAACGGCAGTGCCTAGTTCATCACACGATACTATTTGATACATCAA
TCAACTAATCAATCAATCAATCGATCAATCAATCATCTGCATCAGGCTGT
AGACAGCTCTCTCCAGAAAGATAGATTTTCAGCACAGCACATCCCCTAGC
AATCTATGTGATCTGACATAATATCCCACAACTCGTAACAGGATAAACAC
CAGCACATGATCGAGAGATTGTCTTATTCAATTGAAAGTAATTTTTTGTC
ACTTTTCTGATATTGTAGATGTCGTGGGATGTAGATTGTACACTAGATTT
TTTCATTAATTGCAAGAATAAACAATCCAGTCTTGAAAACGTAAAGCGTA
GTTTGTTTGTTTTTCACGTGGAGACATGTGACAAGATGCACATACTAAAA
TGAGATTCAAACCATTGTTTATTTATTTATTTATTTCGATTTACCACATT
TGTGGAAGGATTGACATAACAGGTGAACTATCACCTTTTTCAAGATGTCA
TCCCAGACCGGACTGTAAGATTTGGACCATCGCACACCGGGGCATGCCCC
TACTCTTTTTCGAAAGGTGTGGTGGGTTCTTTAACGTGCGTGGGGTGTTG
CTCTCCCCAAACACGGGTCCTATCCGAGGGACGTCCCTAACCCTGGATGA
GCTAGGTACTCATTTACACCTGAGTGAAGTGAGGAAAGTCGTGTTAAGTG
CCTTTCCCAAGGGCACAACGTCGGGGCGCAAGTTCGGACATGTCTCTGGG
CGCACCTGGGATTAGATCCCGGGACCCATTGTTTGACAGCCTCGCGCTCT
ACAGTTGCACCACACGACGCCACATTGTTTTATAGCAGCAAGAAATGAAA
CTGATAGGGCTGCTATTTTGGTGTCACAGTTAAGGGGAAATCTTCGAAAA
ACCTTAAAGGTTTCAGGTTTCCCCTGCATGATTTTCTTTATTCATGTCAT
TTTTATTGTCATTTATTGTTCATGTTTGCAATAAAATGTACTGTTTTTTT
TCAT Coding sequence (CDS) from alignment at Sc0000003:7385218..7389271- >transcript:BL96208_cuf0 ID=transcript:BL96208_cuf0|Name=transcript:BL96208_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2316bp|location=Sequence derived from alignment at Sc0000003:7385218..7389271- (Branchiostoma lanceolatum)
ATGGGAGGAGGCACGCAAACTGGAACAGCCATCACGTACATGAAGGACAA
CAGTCAATGGAGACCGAACGTTGCCAAAATCGCCATCGTGGTGACTGACG
GTCAATCTGGCGACGATGTTCAAGTCCCATCCACCCAGGCGCAGAATGCC
GGCATCACTATGCATGCCATCGGTGTTGGAGGAAATGTCGACCAGACCGA
GTTGGCCGCTATCGCCAGTACCGCACAGTACGTCACCACCGTGGCAGACT
ACGACGCGCTGGACGCCCAGATGGCCCAGCTGACCGCCTCTGTTTGTGAC
GAAGCGTCCAACGAGTGCGAGCTGCCTGTGCTGCAGTACCACACCTGTGT
GCAAGAGGCGCTCTCCACCTGCTACTCCCAGACCGGTACACGTGAGGTGA
GCAGGGCAAGGAGGAGTGCGGACACGCCCATCACCCTCCGTCACCAAGCC
CCTGTGGTGGACAGCCGGGGTATGCTGGCCGTGGTGACCGTCACTGTGGG
TGTCGTCTTTGTGGCCGCCTTGGCATTCACCTTCAAGATGAAGCAGCTGA
CCAAGGGCAAGGCCAACGGCAGTGCCTAGATGGGAGGAGGCACGCAAACT
GGAACAGCCATCACGTACATGAAGGACAACAGTCAATGGAGACCGAACGT
TGCCAAAATCGCCATCGTGGTGACTGACGGTCAATCTGGCGACGATGTTC
AAGTCCCATCCACCCAGGCGCAGAATGCCGGCATCACTATGCATGCCATC
GGTGTTGGAGGAAATGTCGACCAGACCGAGTTGGCCGCTATCGCCAGTAC
CGCACAGTACGTCACCACCGTGGCAGACTACGACGCGCTGGACGCCCAGA
TGGCCCAGCTGACCGCCTCTGTTTGTGACGAAGCGTCCAACGAGTGCGAG
CTGCCTGTGCTGCAGTACCACACCTGTGTGCAAGAGGCGCTCTCCACCTG
CTACTCCCAGACCGGTACACGTGAGGTGAGCAGGGCAAGGAGGAGTGCGG
ACACGCCCATCACCCTCCGTCACCAAGCCCCTGTGGTGGACAGCCGGGGT
ATGCTGGCCGTGGTGACCGTCACTGTGGGTGTCGTCTTTGTGGCCGCCTT
GGCATTCACCTTCAAGATGAAGCAGCTGACCAAGGGCAAGGCCAACGGCA
GTGCCTAGATGGGAGGAGGCACGCAAACTGGAACAGCCATCACGTACATG
AAGGACAACAGTCAATGGAGACCGAACGTTGCCAAAATCGCCATCGTGGT
GACTGACGGTCAATCTGGCGACGATGTTCAAGTCCCATCCACCCAGGCGC
AGAATGCCGGCATCACTATGCATGCCATCGGTGTTGGAGGAAATGTCGAC
CAGACCGAGTTGGCCGCTATCGCCAGTACCGCACAGTACGTCACCACCGT
GGCAGACTACGACGCGCTGGACGCCCAGATGGCCCAGCTGACCGCCTCTG
TTTGTGACGAAGCGTCCAACGAGTGCGAGCTGCCTGTGCTGCAGTACCAC
ACCTGTGTGCAAGAGGCGCTCTCCACCTGCTACTCCCAGACCGGTACACG
TGAGGTGAGCAGGGCAAGGAGGAGTGCGGACACGCCCATCACCCTCCGTC
ACCAAGCCCCTGTGGTGGACAGCCGGGGTATGCTGGCCGTGGTGACCGTC
ACTGTGGGTGTCGTCTTTGTGGCCGCCTTGGCATTCACCTTCAAGATGAA
GCAGCTGACCAAGGGCAAGGCCAACGGCAGTGCCTAGATGGGAGGAGGCA
CGCAAACTGGAACAGCCATCACGTACATGAAGGACAACAGTCAATGGAGA
CCGAACGTTGCCAAAATCGCCATCGTGGTGACTGACGGTCAATCTGGCGA
CGATGTTCAAGTCCCATCCACCCAGGCGCAGAATGCCGGCATCACTATGC
ATGCCATCGGTGTTGGAGGAAATGTCGACCAGACCGAGTTGGCCGCTATC
GCCAGTACCGCACAGTACGTCACCACCGTGGCAGACTACGACGCGCTGGA
CGCCCAGATGGCCCAGCTGACCGCCTCTGTTTGTGACGAAGCGTCCAACG
AGTGCGAGCTGCCTGTGCTGCAGTACCACACCTGTGTGCAAGAGGCGCTC
TCCACCTGCTACTCCCAGACCGGTACACGTGAGGTGAGCAGGGCAAGGAG
GAGTGCGGACACGCCCATCACCCTCCGTCACCAAGCCCCTGTGGTGGACA
GCCGGGGTATGCTGGCCGTGGTGACCGTCACTGTGGGTGTCGTCTTTGTG
GCCGCCTTGGCATTCACCTTCAAGATGAAGCAGCTGACCAAGGGCAAGGC
CAACGGCAGTGCCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000003 | genome | Sc0000003:7385218..7389271 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96208_cuf0 |
| Biotype | protein_coding |
|
