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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96204_cuf1 >transcript:BL96204_cuf1-protein ID=transcript:BL96204_cuf1-protein|Name=transcript:BL96204_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=270bp
LGVPNVPVQWFKYYVGEPPNFKSYRKLLAPPKKEEAEDRPIPEGGTLTIP
HIEEDDFYETLYWAELLPAGHSTVGTRPVVAFDLAEEERLNPSPTRVYFG
LETKPIVAGKFLPGDSMVIKLQDHILKPHKLHKVRWKKEGELKTFIRQDE
HLLETTGPTLTLNHIMDSDFGVYRAELFGRKEGIPGMELIATRRFNVTKD
ISKTCNGTRSRGHCKCNPGFLGNGEHCADIDECSAELADCLPEASCRNTE
GSYRCECPTGYRGDGRTRCE Run BLAST on NCBI mRNA from alignment at Sc0000301:153767..156186- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96204_cuf1 ID=transcript:BL96204_cuf1|Name=transcript:BL96204_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2420bp|location=Sequence derived from alignment at Sc0000301:153767..156186- (Branchiostoma lanceolatum)
GCTAGGAGTACCAAACGTGCCCGTCCAATGGTTTAAGTATTACGTGGGAG
AACCTCCAAATTTCAAAAGGTACGCATTTCATTTTTTTCTTAGTTTAGCA
GTAAAGCACCCATTTCATAACCTCGTATTGAAGTAAGATATAACACTTTC
AGTACCAAGGAAAGCACCCATTCTGTGCGGTCTATTATATATGGTTTCTC
GTACGAGTTACAGAGAGAATATACAAGAATACCACATCGTGCGACTACAA
GAACTATGGAGAGCACTCATACCATGCAATGCATCCCATGTAGCATATCA
AGTATGGGTTTCCGTAGTTACAAAAAGAAAAGTCAGACTGACACATCCTG
ATATAAAACTTTCAACACTAGGGAGAACACGCATCCCATGTAAAATATCA
AATATAGTTTTCCATAGAAGTTATCGAGGAAAAACTCAAACGTACAAATC
ATGCGGTAACAGCTTCAGTTCTACAGACAGCACTCATTTCATTCAGTCTA
TCCAGCCCTGGTCACTTCTGGAAATTTGAAATAAAAAATAAAAAGAACAG
AAACGCATCACTTCGTAAAAATCAACAATAATCAGTATCCTCGTTTTCTT
CCCTGCTAGTTATCGCAAGTTGCTGGCACCTCCAAAGAAAGAAGAAGCAG
AAGACCGCCCTATCCCAGAAGGCGGAACACTCACCATCCCTCACATAGAG
GAGGACGATTTTTATGAAACTTTATACTGGGCAGAACTACTGCCGGCTGG
GCACAGTACGGTGGGAACGAGACCAGTGGTAGCCTTTGATCTCGCCGAGG
AAGAGCGACTAAATCCCTCTCCTACCCGGGTTTATTTTGGGCTGGAGACA
AAGCCAATAGGTGAGGATTAAATCCGCTGTAAGATGGTAAAATTATCAAA
AAACGTTCTAATTCATAGGGTGCTGTTGGTTATAATGCTTCTGTGTATAA
AGGAATGGCGTTCGAGTCTTGGCTTTAGACCCCTATACAGCAAATTGATT
TTGATTTCAGATAAGAGACAAGAAATAAAAACCAAAAGGGATCAACAAGA
GATGGGTCTTTTTATATCACTGATAAAAAAAAAACAATTTTCACGAAACA
AACAAAATGCACAAGAAATTTGATAGGAAAAAGACAGTCAAGTTCTATGG
AACGTCATTCTTTAAACCATGTTCACCTTTCTAGTAACCAAGAAACACTG
TTCTACAACATTTCCGCCCAGGTTACTTTGTTAGTAATAAACATTACATT
TCATGATCATATGAGTAGAAATTTAGGTAAGGCAAACGTACGCTTTTGCT
AGCAAATGTTGTTTTCTACCTTCCTCTTTATTTTTCACCTCAGTTGCTGG
AAAGTTTTTGCCCGGAGACTCCATGGTTATAAAACTACAGGACCACATAC
TTAAACCACACAAACTTCACAAGGTCCGGTGGAAGAAAGAAGGAGAGTTA
AAAACCTTCATCAGACAAGACGAGCATCTCCTAGGTATGTTATTTACTGT
CTCGCGAAATCATGAAGGCGTTCTTATTTAAGAAAATGTATATTCAGTAA
TTCATAACAAAAAAACAAATATGAATTTCTGATTTTGCTTATTAACGTTA
CCTCCGTCAAATATGTTTTTCCGCCATCGCCAACATTTGAATTGTTTCGT
TTGTTGGTTTGTTAACTATCATGATAATGTCATGGATTCTGCAGCAGTGA
TACTTAAGTGAACTTTCATAGTTTAGATAACAAGAGATTACATTCCAGAA
CACAAAACTGGACAAGGCTTTGGAAGTGACGCAGTGATACACTAAGCTGT
TTCTGTACTACAGTAGACTGGTAGTACTAACTGATGTTGTTATGTAATGT
CTCTTTGTATCCAGAAACTACAGGTCCCACCCTAACCTTGAATCATATAA
TGGATAGCGACTTCGGCGTGTACCGGGCAGAGCTGTTCGGGAGGAAGGAA
GGGATACCTGGCATGGAGCTGATAGCAACAAGACGCTTCAACGTGACGAA
AGGTATGTTTTAGGGCAGATGCAGAAAACAAAGAAAAATGGTTCTGTGAG
CGTCGGTTTGAATTACTTGTTTTATCACTGACAAGACGAAGTATTAAGTC
TTTGAGTCATGTAACGTTACCGAATGAGTAAAAAAATATCTCAAAACAAA
AGTACAAGCTACCCCCTCCCCCTCTCTTACTCTAACTTACTATATTTCCC
TCGCAGATATCAGTAAAACCTGTAACGGTACCCGGAGTAGAGGTCACTGC
AAATGTAACCCGGGTTTCCTTGGTAACGGCGAACACTGCGCGGACATTGA
CGAGTGCTCGGCGGAGTTAGCCGACTGCCTACCCGAAGCCTCGTGCCGTA
ACACGGAGGGCTCGTACCGGTGCGAGTGTCCCACGGGGTACAGGGGCGAC
GGACGGACACGCTGTGAAGG Coding sequence (CDS) from alignment at Sc0000301:153767..156186- >transcript:BL96204_cuf1 ID=transcript:BL96204_cuf1|Name=transcript:BL96204_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4050bp|location=Sequence derived from alignment at Sc0000301:153767..156186- (Branchiostoma lanceolatum)
CTAGGAGTACCAAACGTGCCCGTCCAATGGTTTAAGTATTACGTGGGAGA
ACCTCCAAATTTCAAAAGTTATCGCAAGTTGCTGGCACCTCCAAAGAAAG
AAGAAGCAGAAGACCGCCCTATCCCAGAAGGCGGAACACTCACCATCCCT
CACATAGAGGAGGACGATTTTTATGAAACTTTATACTGGGCAGAACTACT
GCCGGCTGGGCACAGTACGGTGGGAACGAGACCAGTGGTAGCCTTTGATC
TCGCCGAGGAAGAGCGACTAAATCCCTCTCCTACCCGGGTTTATTTTGGG
CTGGAGACAAAGCCAATAGTTGCTGGAAAGTTTTTGCCCGGAGACTCCAT
GGTTATAAAACTACAGGACCACATACTTAAACCACACAAACTTCACAAGG
TCCGGTGGAAGAAAGAAGGAGAGTTAAAAACCTTCATCAGACAAGACGAG
CATCTCCTAGAAACTACAGGTCCCACCCTAACCTTGAATCATATAATGGA
TAGCGACTTCGGCGTGTACCGGGCAGAGCTGTTCGGGAGGAAGGAAGGGA
TACCTGGCATGGAGCTGATAGCAACAAGACGCTTCAACGTGACGAAAGAT
ATCAGTAAAACCTGTAACGGTACCCGGAGTAGAGGTCACTGCAAATGTAA
CCCGGGTTTCCTTGGTAACGGCGAACACTGCGCGGACATTGACGAGTGCT
CGGCGGAGTTAGCCGACTGCCTACCCGAAGCCTCGTGCCGTAACACGGAG
GGCTCGTACCGGTGCGAGTGTCCCACGGGGTACAGGGGCGACGGACGGAC
ACGCTGTGAACTAGGAGTACCAAACGTGCCCGTCCAATGGTTTAAGTATT
ACGTGGGAGAACCTCCAAATTTCAAAAGTTATCGCAAGTTGCTGGCACCT
CCAAAGAAAGAAGAAGCAGAAGACCGCCCTATCCCAGAAGGCGGAACACT
CACCATCCCTCACATAGAGGAGGACGATTTTTATGAAACTTTATACTGGG
CAGAACTACTGCCGGCTGGGCACAGTACGGTGGGAACGAGACCAGTGGTA
GCCTTTGATCTCGCCGAGGAAGAGCGACTAAATCCCTCTCCTACCCGGGT
TTATTTTGGGCTGGAGACAAAGCCAATAGTTGCTGGAAAGTTTTTGCCCG
GAGACTCCATGGTTATAAAACTACAGGACCACATACTTAAACCACACAAA
CTTCACAAGGTCCGGTGGAAGAAAGAAGGAGAGTTAAAAACCTTCATCAG
ACAAGACGAGCATCTCCTAGAAACTACAGGTCCCACCCTAACCTTGAATC
ATATAATGGATAGCGACTTCGGCGTGTACCGGGCAGAGCTGTTCGGGAGG
AAGGAAGGGATACCTGGCATGGAGCTGATAGCAACAAGACGCTTCAACGT
GACGAAAGATATCAGTAAAACCTGTAACGGTACCCGGAGTAGAGGTCACT
GCAAATGTAACCCGGGTTTCCTTGGTAACGGCGAACACTGCGCGGACATT
GACGAGTGCTCGGCGGAGTTAGCCGACTGCCTACCCGAAGCCTCGTGCCG
TAACACGGAGGGCTCGTACCGGTGCGAGTGTCCCACGGGGTACAGGGGCG
ACGGACGGACACGCTGTGAACTAGGAGTACCAAACGTGCCCGTCCAATGG
TTTAAGTATTACGTGGGAGAACCTCCAAATTTCAAAAGTTATCGCAAGTT
GCTGGCACCTCCAAAGAAAGAAGAAGCAGAAGACCGCCCTATCCCAGAAG
GCGGAACACTCACCATCCCTCACATAGAGGAGGACGATTTTTATGAAACT
TTATACTGGGCAGAACTACTGCCGGCTGGGCACAGTACGGTGGGAACGAG
ACCAGTGGTAGCCTTTGATCTCGCCGAGGAAGAGCGACTAAATCCCTCTC
CTACCCGGGTTTATTTTGGGCTGGAGACAAAGCCAATAGTTGCTGGAAAG
TTTTTGCCCGGAGACTCCATGGTTATAAAACTACAGGACCACATACTTAA
ACCACACAAACTTCACAAGGTCCGGTGGAAGAAAGAAGGAGAGTTAAAAA
CCTTCATCAGACAAGACGAGCATCTCCTAGAAACTACAGGTCCCACCCTA
ACCTTGAATCATATAATGGATAGCGACTTCGGCGTGTACCGGGCAGAGCT
GTTCGGGAGGAAGGAAGGGATACCTGGCATGGAGCTGATAGCAACAAGAC
GCTTCAACGTGACGAAAGATATCAGTAAAACCTGTAACGGTACCCGGAGT
AGAGGTCACTGCAAATGTAACCCGGGTTTCCTTGGTAACGGCGAACACTG
CGCGGACATTGACGAGTGCTCGGCGGAGTTAGCCGACTGCCTACCCGAAG
CCTCGTGCCGTAACACGGAGGGCTCGTACCGGTGCGAGTGTCCCACGGGG
TACAGGGGCGACGGACGGACACGCTGTGAACTAGGAGTACCAAACGTGCC
CGTCCAATGGTTTAAGTATTACGTGGGAGAACCTCCAAATTTCAAAAGTT
ATCGCAAGTTGCTGGCACCTCCAAAGAAAGAAGAAGCAGAAGACCGCCCT
ATCCCAGAAGGCGGAACACTCACCATCCCTCACATAGAGGAGGACGATTT
TTATGAAACTTTATACTGGGCAGAACTACTGCCGGCTGGGCACAGTACGG
TGGGAACGAGACCAGTGGTAGCCTTTGATCTCGCCGAGGAAGAGCGACTA
AATCCCTCTCCTACCCGGGTTTATTTTGGGCTGGAGACAAAGCCAATAGT
TGCTGGAAAGTTTTTGCCCGGAGACTCCATGGTTATAAAACTACAGGACC
ACATACTTAAACCACACAAACTTCACAAGGTCCGGTGGAAGAAAGAAGGA
GAGTTAAAAACCTTCATCAGACAAGACGAGCATCTCCTAGAAACTACAGG
TCCCACCCTAACCTTGAATCATATAATGGATAGCGACTTCGGCGTGTACC
GGGCAGAGCTGTTCGGGAGGAAGGAAGGGATACCTGGCATGGAGCTGATA
GCAACAAGACGCTTCAACGTGACGAAAGATATCAGTAAAACCTGTAACGG
TACCCGGAGTAGAGGTCACTGCAAATGTAACCCGGGTTTCCTTGGTAACG
GCGAACACTGCGCGGACATTGACGAGTGCTCGGCGGAGTTAGCCGACTGC
CTACCCGAAGCCTCGTGCCGTAACACGGAGGGCTCGTACCGGTGCGAGTG
TCCCACGGGGTACAGGGGCGACGGACGGACACGCTGTGAACTAGGAGTAC
CAAACGTGCCCGTCCAATGGTTTAAGTATTACGTGGGAGAACCTCCAAAT
TTCAAAAGTTATCGCAAGTTGCTGGCACCTCCAAAGAAAGAAGAAGCAGA
AGACCGCCCTATCCCAGAAGGCGGAACACTCACCATCCCTCACATAGAGG
AGGACGATTTTTATGAAACTTTATACTGGGCAGAACTACTGCCGGCTGGG
CACAGTACGGTGGGAACGAGACCAGTGGTAGCCTTTGATCTCGCCGAGGA
AGAGCGACTAAATCCCTCTCCTACCCGGGTTTATTTTGGGCTGGAGACAA
AGCCAATAGTTGCTGGAAAGTTTTTGCCCGGAGACTCCATGGTTATAAAA
CTACAGGACCACATACTTAAACCACACAAACTTCACAAGGTCCGGTGGAA
GAAAGAAGGAGAGTTAAAAACCTTCATCAGACAAGACGAGCATCTCCTAG
AAACTACAGGTCCCACCCTAACCTTGAATCATATAATGGATAGCGACTTC
GGCGTGTACCGGGCAGAGCTGTTCGGGAGGAAGGAAGGGATACCTGGCAT
GGAGCTGATAGCAACAAGACGCTTCAACGTGACGAAAGATATCAGTAAAA
CCTGTAACGGTACCCGGAGTAGAGGTCACTGCAAATGTAACCCGGGTTTC
CTTGGTAACGGCGAACACTGCGCGGACATTGACGAGTGCTCGGCGGAGTT
AGCCGACTGCCTACCCGAAGCCTCGTGCCGTAACACGGAGGGCTCGTACC
GGTGCGAGTGTCCCACGGGGTACAGGGGCGACGGACGGACACGCTGTGAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000301 | genome | Sc0000301:153767..156186 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96204_cuf1 |
| Biotype | protein_coding |
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