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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96202_cuf2 >transcript:BL96202_cuf2-protein ID=transcript:BL96202_cuf2-protein|Name=transcript:BL96202_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
LENILLSSANIVCTSCTSKSAAVSRCMECASYICPNCVSAHNWMLCFQNH
HVVPLEELQGTAGRSALQRPVFCTTHQGEPLKFYCNTCEVPICKECTVLD
HAITSHSYVYLTDQNVAVGNGLRTLVEQSKEKVDSLKKKQAFLQDSATQV
EKQGEEVIQQINETIADLKTVLEQCKEELVEELNDWMAGKQEALNRLQSH
IQDTVDRINHGCTFTENLLRQGSHVEILSLQGQVETQLQSLLTFNPQHKA
EIQFVVNSDLLELIEKGSVGSLKSEELKAE Run BLAST on NCBI mRNA from alignment at Sc0000042:1703870..1708443- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96202_cuf2 ID=transcript:BL96202_cuf2|Name=transcript:BL96202_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=4574bp|location=Sequence derived from alignment at Sc0000042:1703870..1708443- (Branchiostoma lanceolatum)
TTCTGGAGAACATCCTGCTCAGCTCTGCTAACATCGTCCATTGCCAAAAT
CAACCATTGTTTGAATAAGTAGTTCAGATTAACCTGTGTACCTCCACCAA
AAATTTAAACGGAGCTCTATTCACAGGGCCTCTCCGGTCTCCCCGATGAC
TTCGTTGCGAGGAACCTGCTAGAGAACATCCTGCTCAGCTCTGCTAACAT
CGTCTGCACCAGCTGTACGAGCAAGTCGGCGGCGGTGTCGCGGTGCATGG
AGTGTGCCAGCTACATCTGCCCTAACTGCGTCTCCGCCCACAACTGGATG
CTGTGCTTCCAGAACCACCATGTGGTCCCCCTAGAAGAGCTGCAGGGTAC
TTTGTTTGTTTCTATTTGTATTTTGAACAGCTGGGTACACAGGAGTGGAT
AAGGCACATGTGGTAAATGTAATAGACAAGTTTACTTGTTAAAGGCACAT
GCGGTAATATACAGGAGTGGTAAGGCACATGTGTTAATGTAATGTGTGTT
AATGTGTTAATGTAAGATGTAAATACCTGTATCAGTGTAGTTTGTTATAT
GTACATTTGTTTTAATACTCCAGGAAGATTAGCTATGTACGTTTGTGCTT
GTATGAAAGCTAATGGAGTGAATAACGTATCCAAGTATCCTTCAACTCTG
TTTTTCACAGGGGCCCAGTTTACATTACACAAAGGTTAGACATCCAGGTA
ATAAGATACACAAGATAACAGTTGCTCAAGCAACAGGATAATCTTGTAAA
TGTTTTGTCAGACGTTTCAGACAGCATCTTCAAAGAAAATAAATAAAACT
AATAGCAGATTGTAACATAAGTAACACAGGGTGTTGTAACACAAGTAACA
AAACATGTGTTAGTTGAAACATAAAAGAAAGCAGAATATTCACATCAGAT
TGGGTAATCATTACTCATGTGTAGATCTACATTGAATAAATGATAGATTT
TCTTACATGTACATGTAGGTACAGCAGGCCGAAGTGCCCTGCAGAGACCT
GTGTTCTGCACCACGCACCAGGGGGAGCCGCTCAAGTTCTACTGCAACAC
ATGCGAGGTGCCGATCTGCAAGGAGTGCACCGTCCTGGACCACGCCATCA
CCTCCCACAGCTACGTCTACCTCACCGATCAGAACGTCGCCGTCGGCAAT
GGGCTGCGGACCCTGGTCGAGCAGAGCAAGGAGAAGGTCTGTTTGTTTGT
TTGTTTATTTGAAGCTTTTGTTTATTCATGAGAAACTCCCATCAATTAAC
TCCCACCATTTGAATCCCCTGATGCGACCAATCTTGTGCCCTTGGGAAAA
AAGGCACTTTACTCGACTTTCCTCAATCCAGCCAAGTGTAAAAACGGGTA
TATTATGTGTGTGGGTCACGACACCAGCAATAGCTGCCTGTGTCCCACGT
GTATTGCACTGTTGCAATTCTTATAAAATCAAAAATCAAACTCAAATCGG
CCAGCAGGCCGCTTTTCATTGAGGTCATGAGGGAAGAAGTTGAGGACAGA
TAAAATACTGTAAATTCATTTAAGTTTGCGTTGTTTTTATTTCATGGTAG
GGAGAAAAGGAGTGTTCGTGGTGGTGTTAAGTTCAGGTTTGAAACAATAG
TAGCACTACAGTCATAGGCGGGCAAAAAGTTTTGCGGTGGTTTTAAGTTT
GTTTGTTTGTTTGTTTATTTTGTTAACCCAGGAATACATATCGCCTGAAG
GCGGCGTTTTTCAAAGATTCCTGGGGGTTTTACCCCATACATAGTAACCT
GCCTAGGCGACCACCTTTTCAACGCGACCACCTGGCCATGGCGACCGCTT
TTTCTCAGTCCCGAAAATTTTCCCCATAGGCACAAGCATAAAGCTGCCTG
CCCAAGGCGACCACCTGTCCAACGCGACCGCGACCGCCACGAATTGGGAC
CGCACAGAGCACAATCCCTGCCCATGGCGGCCGCCTAATTTTCAAGCGTG
TGGTGACATCGGATCATTTTGCTGTCGGATTTCACGGAAATGTTTTCAAG
ACTTTGAAGGACAAAAATAAGGACAAAAATATATGGAATAGCAATGTTAT
AGCATCGATTCCTCCATGAAGTGTTTTAATAAAACGTTCCCCCTATAAAC
ATTGTAAAGACAAATGTTTGTGATGTTGTTGTGCCTATCGTAATCTTATA
GTTTAACGTGAACTCAGTTCCGTTTAAACTCAACTTTCAAAACGAATACG
TAGTGCATGGCGTCAAAAAGTCAGATTTCACAGAAATTACTATCTATTTC
TTGTATTTTCAACAAAAATGTGTCTGTATCTTGCTAAATTCCGCCGAAAA
ATGACTTCGCGGCGGGCAAAACATCAGGCGAGAAATGTTGTTCCTTGGTC
CCGACGCCATCTTGGATTTCGGGCGGCCCGGATTTGGCGTACCGCTGACC
TTTGTAAAACACGATGATTTTGTGTATGAACATTTACGAATACTCTAGTT
ATTGGTGAAAATCAAAATTCTTATTTTCTTTTTATTTCCATGAATCTCAC
AAACCTTTATTGGACGCTGTGCGTTCTGCTGCACTGACTTACCCTTCGAT
GCGGTGGCACAGAGCTTCGCGGTGCGACGAAATCACACCGTTAACGCGTT
CCGTTTTCATCTTTAGTTGTCAGATCGAAAATTTTTTGACCCTTTCATCC
AGCGGTCGGCGACCCAAAAAAGGCTGGGACCAGCAGGCGTTTTCTAGGGA
TCTGTCTTAGGCCTTAAAACTTCGATGATGTGCGTGTGTGTGTGTACTAT
TCAATGTAACGTGTGAATGCGGGAGGGCGCTGCGAGATCATCGAGGCAAC
CATCGTTTTGTAGTCAAAATTATGACGAAAATTTGGACACGATGTAGCGG
TATACAATTATTACATCGATAACGGAAAATGTAATTTTTGTAGGATCTTT
CTGTCAATGAGAATTGAACCTGGTGAGGGTCATGCTGTCTAAATTCACAT
AATTTTTTCATCATTTACGTACTGTATTTGAAAACCTCGACCTGGAAACA
TGTGAGTGGAATCCTCTTCATGGCGACCACCTGTCCATCGCGACCGTTTT
TGCCCGGTCCGCCGGGTGGTCGCCTTGGGCAGGTTTGACTGTACATAGTA
ACAATAAAACTGTCAAGTAATAACAAATGATACAAAAGTTTGCACTGAAA
GTTCACTGCAAAAACCGTGAACATACATGTAAAACCACCGTGAACATTTC
AGCATTTACAGTATAACAGAGATACAAATTACGTCATTTAACGCTTGTTC
TCATTTAGATGTACACATTTTGTAACTTCCGTCACCGTTTGAAGTAAGGC
ATTCCTGACATTAGGATGTGCCACATATACTTTTTGTAAGGTGCCAAACT
GTCATTTTTCTGGCTTTTAAAAACGACAGTTTGGCACCTTATATATGGCA
TATCCTAAATGTCAGGAACATCTTACTTAAAACGGTAACGGAAGTTACAA
AATGTGTACATTTAAATGAGAACAAGTCCTAATAACTCTATTATACAGGT
GGACAGTCTCAAGAAAAAGCAGGCCCCCTTGCAAGATTCGGCTGTGCAGG
TCGTGAAGCAAGGGGAGGAGGTCATCCAGCAGATCAATGAGACGATAGCG
GACCTGAAGACAAAAGAGTGACTATATTATGTACTAAGTACTTAATATTT
AAGTTCTAACAACTCTATCATTTAGGTGGACAGTCTCAAGAAAAAGCAGG
CATTCTTGCAAGATTCAGCCACCCAGGTGGAGAAGCAAGGTGAGGAGGTG
ATCCAGCAGATCAACGAGACGATCGCGGACCTGAAGACGGTTCTCGAGCA
GTGCAAGGAGGAGCTTGTGGAGGAGCTGAATGACTGGATGGCGGGGAAGC
AGGAGGCGCTGAACCGGCTGCAGTCCCACATACAGGACACCGTCGACAGG
ATCAACCATGGGTGCACGTTCACCGAGAACCTACTCAGGCATGTACTACC
ATAAAGTGGGATATGTAATTACACAGAAATCTGGGAAATTTGATTGACAT
CTGTTTAAATGTGGTTAGCGATCTTGCCTCTGGAACTAGAAGCCCCGGGT
TTGATCCCGGCTGTGTCGCTCACCCGATATGCATGCTACCGGAAAGGGTC
GCAGTCCTTAGGACGGGACGTTAAGCCGTGGTCCGCTGTTCATTGTGCTT
GTCGAAAAGAGCTAGGGGAATTTCCCCGGTACTATGAACCTGTAAATACT
GTATATAGCGTCTGTCTTCCTGTCACGACCAGTGGAAGATTAGCTCATCT
GTTCATTTGAGCTAAAGTGGTTCGAGATCACTTTCCTTTTCTTTTCCTTT
CTTTTTTTTATGTTTCTACTATATATGTCTTTGTTGATTTTGTTGTTGGA
AAATACAGAACTGATGAAGATTATTTTTCCAAAACCTCCTCAGGCAGGGC
AGCCACGTGGAAATCCTCTCTCTCCAGGGTCAGGTCGAGACCCAGCTGCA
ATCCCTCCTGACCTTTAACCCCCAGCACAAGGCAGAGATACAGTTCGTGG
TGAACTCCGACCTGCTGGAGCTCATCGAGAAGGGTTCGGTCGGGTCATTG
AAAAGCGAGGAGCTTAAAGCTGAA Coding sequence (CDS) from alignment at Sc0000042:1703870..1708443- >transcript:BL96202_cuf2 ID=transcript:BL96202_cuf2|Name=transcript:BL96202_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=4200bp|location=Sequence derived from alignment at Sc0000042:1703870..1708443- (Branchiostoma lanceolatum)
CTGGAGAACATCCTGCTCAGCTCTGCTAACATCGTCTGCACCAGCTGTAC
GAGCAAGTCGGCGGCGGTGTCGCGGTGCATGGAGTGTGCCAGCTACATCT
GCCCTAACTGCGTCTCCGCCCACAACTGGATGCTGTGCTTCCAGAACCAC
CATGTGGTCCCCCTAGAAGAGCTGCAGGGTACAGCAGGCCGAAGTGCCCT
GCAGAGACCTGTGTTCTGCACCACGCACCAGGGGGAGCCGCTCAAGTTCT
ACTGCAACACATGCGAGGTGCCGATCTGCAAGGAGTGCACCGTCCTGGAC
CACGCCATCACCTCCCACAGCTACGTCTACCTCACCGATCAGAACGTCGC
CGTCGGCAATGGGCTGCGGACCCTGGTCGAGCAGAGCAAGGAGAAGGTGG
ACAGTCTCAAGAAAAAGCAGGCATTCTTGCAAGATTCAGCCACCCAGGTG
GAGAAGCAAGGTGAGGAGGTGATCCAGCAGATCAACGAGACGATCGCGGA
CCTGAAGACGGTTCTCGAGCAGTGCAAGGAGGAGCTTGTGGAGGAGCTGA
ATGACTGGATGGCGGGGAAGCAGGAGGCGCTGAACCGGCTGCAGTCCCAC
ATACAGGACACCGTCGACAGGATCAACCATGGGTGCACGTTCACCGAGAA
CCTACTCAGGCAGGGCAGCCACGTGGAAATCCTCTCTCTCCAGGGTCAGG
TCGAGACCCAGCTGCAATCCCTCCTGACCTTTAACCCCCAGCACAAGGCA
GAGATACAGTTCGTGGTGAACTCCGACCTGCTGGAGCTCATCGAGAAGGG
TTCGGTCGGGTCATTGAAAAGCGAGGAGCTTAAAGCTGAACTGGAGAACA
TCCTGCTCAGCTCTGCTAACATCGTCTGCACCAGCTGTACGAGCAAGTCG
GCGGCGGTGTCGCGGTGCATGGAGTGTGCCAGCTACATCTGCCCTAACTG
CGTCTCCGCCCACAACTGGATGCTGTGCTTCCAGAACCACCATGTGGTCC
CCCTAGAAGAGCTGCAGGGTACAGCAGGCCGAAGTGCCCTGCAGAGACCT
GTGTTCTGCACCACGCACCAGGGGGAGCCGCTCAAGTTCTACTGCAACAC
ATGCGAGGTGCCGATCTGCAAGGAGTGCACCGTCCTGGACCACGCCATCA
CCTCCCACAGCTACGTCTACCTCACCGATCAGAACGTCGCCGTCGGCAAT
GGGCTGCGGACCCTGGTCGAGCAGAGCAAGGAGAAGGTGGACAGTCTCAA
GAAAAAGCAGGCATTCTTGCAAGATTCAGCCACCCAGGTGGAGAAGCAAG
GTGAGGAGGTGATCCAGCAGATCAACGAGACGATCGCGGACCTGAAGACG
GTTCTCGAGCAGTGCAAGGAGGAGCTTGTGGAGGAGCTGAATGACTGGAT
GGCGGGGAAGCAGGAGGCGCTGAACCGGCTGCAGTCCCACATACAGGACA
CCGTCGACAGGATCAACCATGGGTGCACGTTCACCGAGAACCTACTCAGG
CAGGGCAGCCACGTGGAAATCCTCTCTCTCCAGGGTCAGGTCGAGACCCA
GCTGCAATCCCTCCTGACCTTTAACCCCCAGCACAAGGCAGAGATACAGT
TCGTGGTGAACTCCGACCTGCTGGAGCTCATCGAGAAGGGTTCGGTCGGG
TCATTGAAAAGCGAGGAGCTTAAAGCTGAACTGGAGAACATCCTGCTCAG
CTCTGCTAACATCGTCTGCACCAGCTGTACGAGCAAGTCGGCGGCGGTGT
CGCGGTGCATGGAGTGTGCCAGCTACATCTGCCCTAACTGCGTCTCCGCC
CACAACTGGATGCTGTGCTTCCAGAACCACCATGTGGTCCCCCTAGAAGA
GCTGCAGGGTACAGCAGGCCGAAGTGCCCTGCAGAGACCTGTGTTCTGCA
CCACGCACCAGGGGGAGCCGCTCAAGTTCTACTGCAACACATGCGAGGTG
CCGATCTGCAAGGAGTGCACCGTCCTGGACCACGCCATCACCTCCCACAG
CTACGTCTACCTCACCGATCAGAACGTCGCCGTCGGCAATGGGCTGCGGA
CCCTGGTCGAGCAGAGCAAGGAGAAGGTGGACAGTCTCAAGAAAAAGCAG
GCATTCTTGCAAGATTCAGCCACCCAGGTGGAGAAGCAAGGTGAGGAGGT
GATCCAGCAGATCAACGAGACGATCGCGGACCTGAAGACGGTTCTCGAGC
AGTGCAAGGAGGAGCTTGTGGAGGAGCTGAATGACTGGATGGCGGGGAAG
CAGGAGGCGCTGAACCGGCTGCAGTCCCACATACAGGACACCGTCGACAG
GATCAACCATGGGTGCACGTTCACCGAGAACCTACTCAGGCAGGGCAGCC
ACGTGGAAATCCTCTCTCTCCAGGGTCAGGTCGAGACCCAGCTGCAATCC
CTCCTGACCTTTAACCCCCAGCACAAGGCAGAGATACAGTTCGTGGTGAA
CTCCGACCTGCTGGAGCTCATCGAGAAGGGTTCGGTCGGGTCATTGAAAA
GCGAGGAGCTTAAAGCTGAACTGGAGAACATCCTGCTCAGCTCTGCTAAC
ATCGTCTGCACCAGCTGTACGAGCAAGTCGGCGGCGGTGTCGCGGTGCAT
GGAGTGTGCCAGCTACATCTGCCCTAACTGCGTCTCCGCCCACAACTGGA
TGCTGTGCTTCCAGAACCACCATGTGGTCCCCCTAGAAGAGCTGCAGGGT
ACAGCAGGCCGAAGTGCCCTGCAGAGACCTGTGTTCTGCACCACGCACCA
GGGGGAGCCGCTCAAGTTCTACTGCAACACATGCGAGGTGCCGATCTGCA
AGGAGTGCACCGTCCTGGACCACGCCATCACCTCCCACAGCTACGTCTAC
CTCACCGATCAGAACGTCGCCGTCGGCAATGGGCTGCGGACCCTGGTCGA
GCAGAGCAAGGAGAAGGTGGACAGTCTCAAGAAAAAGCAGGCATTCTTGC
AAGATTCAGCCACCCAGGTGGAGAAGCAAGGTGAGGAGGTGATCCAGCAG
ATCAACGAGACGATCGCGGACCTGAAGACGGTTCTCGAGCAGTGCAAGGA
GGAGCTTGTGGAGGAGCTGAATGACTGGATGGCGGGGAAGCAGGAGGCGC
TGAACCGGCTGCAGTCCCACATACAGGACACCGTCGACAGGATCAACCAT
GGGTGCACGTTCACCGAGAACCTACTCAGGCAGGGCAGCCACGTGGAAAT
CCTCTCTCTCCAGGGTCAGGTCGAGACCCAGCTGCAATCCCTCCTGACCT
TTAACCCCCAGCACAAGGCAGAGATACAGTTCGTGGTGAACTCCGACCTG
CTGGAGCTCATCGAGAAGGGTTCGGTCGGGTCATTGAAAAGCGAGGAGCT
TAAAGCTGAACTGGAGAACATCCTGCTCAGCTCTGCTAACATCGTCTGCA
CCAGCTGTACGAGCAAGTCGGCGGCGGTGTCGCGGTGCATGGAGTGTGCC
AGCTACATCTGCCCTAACTGCGTCTCCGCCCACAACTGGATGCTGTGCTT
CCAGAACCACCATGTGGTCCCCCTAGAAGAGCTGCAGGGTACAGCAGGCC
GAAGTGCCCTGCAGAGACCTGTGTTCTGCACCACGCACCAGGGGGAGCCG
CTCAAGTTCTACTGCAACACATGCGAGGTGCCGATCTGCAAGGAGTGCAC
CGTCCTGGACCACGCCATCACCTCCCACAGCTACGTCTACCTCACCGATC
AGAACGTCGCCGTCGGCAATGGGCTGCGGACCCTGGTCGAGCAGAGCAAG
GAGAAGGTGGACAGTCTCAAGAAAAAGCAGGCATTCTTGCAAGATTCAGC
CACCCAGGTGGAGAAGCAAGGTGAGGAGGTGATCCAGCAGATCAACGAGA
CGATCGCGGACCTGAAGACGGTTCTCGAGCAGTGCAAGGAGGAGCTTGTG
GAGGAGCTGAATGACTGGATGGCGGGGAAGCAGGAGGCGCTGAACCGGCT
GCAGTCCCACATACAGGACACCGTCGACAGGATCAACCATGGGTGCACGT
TCACCGAGAACCTACTCAGGCAGGGCAGCCACGTGGAAATCCTCTCTCTC
CAGGGTCAGGTCGAGACCCAGCTGCAATCCCTCCTGACCTTTAACCCCCA
GCACAAGGCAGAGATACAGTTCGTGGTGAACTCCGACCTGCTGGAGCTCA
TCGAGAAGGGTTCGGTCGGGTCATTGAAAAGCGAGGAGCTTAAAGCTGAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000042 | genome | Sc0000042:1703870..1708443 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96202_cuf2 |
| Biotype | protein_coding |
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