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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96191_cuf3 >transcript:BL96191_cuf3-protein ID=transcript:BL96191_cuf3-protein|Name=transcript:BL96191_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=261bp
MFGVYFIVVFFAMKADKRDVVKWGVLPIADNSRCDAHFYLITVYTGMKAG
SGTSSRVGIILHGENGDSGPRPLAACQQQVFRRGSVTTFLLSTPESLGDL
TNIHVWHDSSGQGGGASWFLDRLVVEDLQSNVRYVFFCQRWLAVEMEDGK
VDRFLSAAGRDELTNFSSIFQTKTRQDISDGHLWFSVASRPTRSNFSRVQ
RASCCLSLVFLTMIANAMFFRTDDSVKQQVYRLGPLVFTPSKLWISFAST
LIVFPVNFVIV Run BLAST on NCBI mRNA from alignment at Sc0000086:1164369..1167736+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96191_cuf3 ID=transcript:BL96191_cuf3|Name=transcript:BL96191_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=3368bp|location=Sequence derived from alignment at Sc0000086:1164369..1167736+ (Branchiostoma lanceolatum)
CCTGTACTATCCCCTACCCTGTCTTTCCTTGGTGCTGAAGGGCCTTCCCC
ACCCTGTACTATCCCCTACCCTGTCTTTCCTTGGTGATGAAGGGCCTTCC
CCACCCTGTATTTCTTGTATGCATCCTTGCCTTGGTGCTGAAGGGCCTTC
TCCACCCTGTACTATCTTGTACATTCCCTTTCCTTGGTGCTGAATGGCGT
GCAATTCACCAATTATTATATACCAGCAACTACATAAGCATATTGAAAAT
ATGTAGCTTCTGAGTTTAACATACAACATCGTGGACACTAATCACACGTC
ATAGTCACGTAAGTGTCTTACAGATCCAACAGAGTGCAAGAGCGTCCCCG
GTGCATCCTACGCTGACGTCACGGCCAGACTGAGGACAGCGCGACGTAAC
GAGACGTACAAGCTGGCCATTCTCACGCCCAGGTGCAACTGGTGGAACGT
GGCCGGGAACAAGTGGAACCCATCCGGCTGTACGGTACGAACACCGTCTG
TACTGATATGGTCCTGAAGATTTGCAGTTTGATCGACAATATAATTCAAC
ATGGCTTTGTGCATGAGGGATATTTTCCTTCCGGTATCTGGATTAGATAC
AATGTTCTGCGAACAGCAGGTTTTAATGTTCTGCTCGACGGAAAGGCACT
TTTCATCCCTTTCCTCATTTGACTCGGGTGAGTACCTCGCTTCGGTTAGG
AACGTCTCTCTGATAGAACGTTGTGTGAAAGACCGGTGTTTAGGGAGATC
CACAGCTTCAGCACGTTAAAGAACCAATCACAATTATTGGTAAGAGTAGG
GAACCGTCCCTTGTTGCGCTGGAATTACGTCGTGAGTATTTGTTCTGACT
AACTGCAAGGCAAGCCCTCGACGATAACCTGCAACAAGTGTAGAAATTGA
TAAATGTTTATTCCCAGGTCGGCCCGAACACGACAGCAAGTCACACCCAG
TGCCTGACGACACATCTCACATCGTTCGGAGCAGACTTCATCGTCCCGCC
CAACACCATCGACTTCAGCACGGTGTTCGCAAAGTTCGCCAACCTGAGTG
ACAACGCCGCCGTGTTCTCCACTGTCATCGTCATGTTTGGGGTCTACTTC
ATTGTCGTCTTCTTTGCGATGAAGGCGGACAAACGCGATGTAGTCAAGGT
ACGTAAGTACTTCGATGTATTATACTGGTTTGCATATTTACGTGTTACTT
GCCTGCTTCTGAAAAGTACGTTTTTCGCGATTCGGGTGTGCCAGATTCCA
ACCCGGCAGCAGTGGTCACTGTGACGTTATTGAAGAAATTCCTGGCAGCA
ACAATGACGTTTTGGGAATGTGATTTGAAAGGTTCGATGCTCAATAACGT
CAGAAGAGTGTCATTTTTGTGCAAAAGTCTGTACAAAGCTATGACCATCA
AATGATACTTATCATGGTGAATGCAATACGCAAATGTTGTATTTTGGTAT
CATTGGTGTCTCAGGCACTATACCAATAGCGGCCGTGTGTAGTAAGATAT
CATTCTGCCACAGTGGGGAGTTCTACCCATCGCCGACAATAGCCGTTGTG
ACGCCCATTTCTACCTGATCACCGTGTACACGGGCATGAAGGCCGGCTCA
GGGACCTCCTCCAGAGTCGGCATCATCCTACATGGGGAAAACGGCGATTC
CGGGCCAAGACCACTGGCAGCATGTCAACAGCAGGTTATCAATTATTGTA
ACATCGTTCACGAATATACGTCGAGCATATACTAGATAGATAGGCACAAT
GACGGCATATTTACATACTCATTTCATATAATACACGCGTAAGCTAATAT
TGTTTGTAATTTTTCATGTGTCGGTAGTTGTAAAAGACGTTCCAAAATAA
TTCCGCTGTGTCAATGAAACATATCAATACATTATGCTCTGTAAGATACA
AATGTACTCTCTCTCTTGCTTCTCTTCGCTGACGAAGATTTCAGGGGTCA
AATGTACTAGTTGCAAGGAATAGGCGTAACAGGAAGGGTTGTTAGGAGAT
ACAGCTTTCATCTTTTTTATCGTATATTCTTCTTCCGTCAACATCCAAAA
AATCCTTTTCAGTTTTGAATTCAAAGATTATTCCTTGTCTGTTCCATCTT
TTTTCTTAAAACATTAGGTCTTTAGGCGTGGCAGTGTGACCACCTTCCTT
CTATCCACCCCTGAGAGCCTCGGAGATCTGACCAACATCCACGTTTGGCA
CGACAGCTCCGGGCAGGGCGGAGGAGCGAGCTGGTTTCTAGATCGCCTTG
TTGTTGAGGACCTACAAAGCAACGTTCGGTGAGCAAAAAGAAGTAACTTT
ACCATATTTTACTGCGGTGTTCGGATATATATATTTCAGTGTTTTACATA
TTTTTGTATTCGGATAACAAGGGTAAATGGATTTCAGGTACGTGTTTTTC
TGCCAACGTTGGCTGGCGGTGGAGATGGAGGATGGGAAGGTGGACCGCTT
CCTGAGCGCAGCCGGACGAGATGAACTCACCAACTTCTCATCAATTTTCC
AAACCAAGACTCGCCAGGACATAAGGTAAGAAACAAGAATCGGTTGAAGA
GAATCTTATTCCTTTCTTCAGCGTTCAAATGACATTCAAATGACAGGAAT
ATAGCCACATCACGTGATATTCATTCTTCAGTGTCAACTGGTGATTGTAG
GCTGTTATGATTTGCACCATTTAGTCTGATCAAAATATGTACCATTAATA
TCTATATCAGTCGTCGATTCCTTCGCAGCGGAGCTCACATGTTTTGACGG
TCCAACACAGTGGTTATTGGTTAATCATTGACCTTTCGTTAACTTGACAC
TGAACAGCGATGGTCACCTGTGGTTCTCGGTGGCCTCCCGTCCCACCCGG
AGTAACTTCAGTCGTGTCCAGCGGGCCTCGTGCTGCCTGTCTCTGGTCTT
CCTCACCATGATCGCTAACGCCATGTTCTTTCGGACGGACGACAGCGTCA
AACAACAGGCGGGTTCAGTACTTATTTTGGAAACAGTCACTATCTTTTTA
GTAATTCGTTGTATTTCCAAACGTATCGAGCTAAATGCTGTTTCATGGTT
ATCAATGATCAAAGTATGCACGTGCATTATTTTACTGTAAATATTTTGTT
GGTTATGGCGGTTGTAACGCTTCAAGACAGCATTTGACTGTATGCATGTC
ATGACCTATCAATGGCTGGATTTGCACACGTATTTCCGAGCATACCATAC
TCGGAGTGTGCTCCGAGTGAACTTGAAACGCGTGTGTAAACCCAACCTAA
AGGTCTTGTTCTATCCCCAGGTGTACCGGCTGGGCCCTCTGGTGTTCACT
CCGAGCAAGCTGTGGATCAGCTTTGCCAGCACACTCATCGTGTTTCCCGT
CAACTTCGTCATCGTGTA Coding sequence (CDS) from alignment at Sc0000086:1164369..1167736+ >transcript:BL96191_cuf3 ID=transcript:BL96191_cuf3|Name=transcript:BL96191_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=4698bp|location=Sequence derived from alignment at Sc0000086:1164369..1167736+ (Branchiostoma lanceolatum)
ATGTTTGGGGTCTACTTCATTGTCGTCTTCTTTGCGATGAAGGCGGACAA
ACGCGATGTAGTCAAGTGGGGAGTTCTACCCATCGCCGACAATAGCCGTT
GTGACGCCCATTTCTACCTGATCACCGTGTACACGGGCATGAAGGCCGGC
TCAGGGACCTCCTCCAGAGTCGGCATCATCCTACATGGGGAAAACGGCGA
TTCCGGGCCAAGACCACTGGCAGCATGTCAACAGCAGGTCTTTAGGCGTG
GCAGTGTGACCACCTTCCTTCTATCCACCCCTGAGAGCCTCGGAGATCTG
ACCAACATCCACGTTTGGCACGACAGCTCCGGGCAGGGCGGAGGAGCGAG
CTGGTTTCTAGATCGCCTTGTTGTTGAGGACCTACAAAGCAACGTTCGGT
ACGTGTTTTTCTGCCAACGTTGGCTGGCGGTGGAGATGGAGGATGGGAAG
GTGGACCGCTTCCTGAGCGCAGCCGGACGAGATGAACTCACCAACTTCTC
ATCAATTTTCCAAACCAAGACTCGCCAGGACATAAGCGATGGTCACCTGT
GGTTCTCGGTGGCCTCCCGTCCCACCCGGAGTAACTTCAGTCGTGTCCAG
CGGGCCTCGTGCTGCCTGTCTCTGGTCTTCCTCACCATGATCGCTAACGC
CATGTTCTTTCGGACGGACGACAGCGTCAAACAACAGGTGTACCGGCTGG
GCCCTCTGGTGTTCACTCCGAGCAAGCTGTGGATCAGCTTTGCCAGCACA
CTCATCGTGTTTCCCGTCAACTTCGTCATCGTGATGTTTGGGGTCTACTT
CATTGTCGTCTTCTTTGCGATGAAGGCGGACAAACGCGATGTAGTCAAGT
GGGGAGTTCTACCCATCGCCGACAATAGCCGTTGTGACGCCCATTTCTAC
CTGATCACCGTGTACACGGGCATGAAGGCCGGCTCAGGGACCTCCTCCAG
AGTCGGCATCATCCTACATGGGGAAAACGGCGATTCCGGGCCAAGACCAC
TGGCAGCATGTCAACAGCAGGTCTTTAGGCGTGGCAGTGTGACCACCTTC
CTTCTATCCACCCCTGAGAGCCTCGGAGATCTGACCAACATCCACGTTTG
GCACGACAGCTCCGGGCAGGGCGGAGGAGCGAGCTGGTTTCTAGATCGCC
TTGTTGTTGAGGACCTACAAAGCAACGTTCGGTACGTGTTTTTCTGCCAA
CGTTGGCTGGCGGTGGAGATGGAGGATGGGAAGGTGGACCGCTTCCTGAG
CGCAGCCGGACGAGATGAACTCACCAACTTCTCATCAATTTTCCAAACCA
AGACTCGCCAGGACATAAGCGATGGTCACCTGTGGTTCTCGGTGGCCTCC
CGTCCCACCCGGAGTAACTTCAGTCGTGTCCAGCGGGCCTCGTGCTGCCT
GTCTCTGGTCTTCCTCACCATGATCGCTAACGCCATGTTCTTTCGGACGG
ACGACAGCGTCAAACAACAGGTGTACCGGCTGGGCCCTCTGGTGTTCACT
CCGAGCAAGCTGTGGATCAGCTTTGCCAGCACACTCATCGTGTTTCCCGT
CAACTTCGTCATCGTGATGTTTGGGGTCTACTTCATTGTCGTCTTCTTTG
CGATGAAGGCGGACAAACGCGATGTAGTCAAGTGGGGAGTTCTACCCATC
GCCGACAATAGCCGTTGTGACGCCCATTTCTACCTGATCACCGTGTACAC
GGGCATGAAGGCCGGCTCAGGGACCTCCTCCAGAGTCGGCATCATCCTAC
ATGGGGAAAACGGCGATTCCGGGCCAAGACCACTGGCAGCATGTCAACAG
CAGGTCTTTAGGCGTGGCAGTGTGACCACCTTCCTTCTATCCACCCCTGA
GAGCCTCGGAGATCTGACCAACATCCACGTTTGGCACGACAGCTCCGGGC
AGGGCGGAGGAGCGAGCTGGTTTCTAGATCGCCTTGTTGTTGAGGACCTA
CAAAGCAACGTTCGGTACGTGTTTTTCTGCCAACGTTGGCTGGCGGTGGA
GATGGAGGATGGGAAGGTGGACCGCTTCCTGAGCGCAGCCGGACGAGATG
AACTCACCAACTTCTCATCAATTTTCCAAACCAAGACTCGCCAGGACATA
AGCGATGGTCACCTGTGGTTCTCGGTGGCCTCCCGTCCCACCCGGAGTAA
CTTCAGTCGTGTCCAGCGGGCCTCGTGCTGCCTGTCTCTGGTCTTCCTCA
CCATGATCGCTAACGCCATGTTCTTTCGGACGGACGACAGCGTCAAACAA
CAGGTGTACCGGCTGGGCCCTCTGGTGTTCACTCCGAGCAAGCTGTGGAT
CAGCTTTGCCAGCACACTCATCGTGTTTCCCGTCAACTTCGTCATCGTGA
TGTTTGGGGTCTACTTCATTGTCGTCTTCTTTGCGATGAAGGCGGACAAA
CGCGATGTAGTCAAGTGGGGAGTTCTACCCATCGCCGACAATAGCCGTTG
TGACGCCCATTTCTACCTGATCACCGTGTACACGGGCATGAAGGCCGGCT
CAGGGACCTCCTCCAGAGTCGGCATCATCCTACATGGGGAAAACGGCGAT
TCCGGGCCAAGACCACTGGCAGCATGTCAACAGCAGGTCTTTAGGCGTGG
CAGTGTGACCACCTTCCTTCTATCCACCCCTGAGAGCCTCGGAGATCTGA
CCAACATCCACGTTTGGCACGACAGCTCCGGGCAGGGCGGAGGAGCGAGC
TGGTTTCTAGATCGCCTTGTTGTTGAGGACCTACAAAGCAACGTTCGGTA
CGTGTTTTTCTGCCAACGTTGGCTGGCGGTGGAGATGGAGGATGGGAAGG
TGGACCGCTTCCTGAGCGCAGCCGGACGAGATGAACTCACCAACTTCTCA
TCAATTTTCCAAACCAAGACTCGCCAGGACATAAGCGATGGTCACCTGTG
GTTCTCGGTGGCCTCCCGTCCCACCCGGAGTAACTTCAGTCGTGTCCAGC
GGGCCTCGTGCTGCCTGTCTCTGGTCTTCCTCACCATGATCGCTAACGCC
ATGTTCTTTCGGACGGACGACAGCGTCAAACAACAGGTGTACCGGCTGGG
CCCTCTGGTGTTCACTCCGAGCAAGCTGTGGATCAGCTTTGCCAGCACAC
TCATCGTGTTTCCCGTCAACTTCGTCATCGTGATGTTTGGGGTCTACTTC
ATTGTCGTCTTCTTTGCGATGAAGGCGGACAAACGCGATGTAGTCAAGTG
GGGAGTTCTACCCATCGCCGACAATAGCCGTTGTGACGCCCATTTCTACC
TGATCACCGTGTACACGGGCATGAAGGCCGGCTCAGGGACCTCCTCCAGA
GTCGGCATCATCCTACATGGGGAAAACGGCGATTCCGGGCCAAGACCACT
GGCAGCATGTCAACAGCAGGTCTTTAGGCGTGGCAGTGTGACCACCTTCC
TTCTATCCACCCCTGAGAGCCTCGGAGATCTGACCAACATCCACGTTTGG
CACGACAGCTCCGGGCAGGGCGGAGGAGCGAGCTGGTTTCTAGATCGCCT
TGTTGTTGAGGACCTACAAAGCAACGTTCGGTACGTGTTTTTCTGCCAAC
GTTGGCTGGCGGTGGAGATGGAGGATGGGAAGGTGGACCGCTTCCTGAGC
GCAGCCGGACGAGATGAACTCACCAACTTCTCATCAATTTTCCAAACCAA
GACTCGCCAGGACATAAGCGATGGTCACCTGTGGTTCTCGGTGGCCTCCC
GTCCCACCCGGAGTAACTTCAGTCGTGTCCAGCGGGCCTCGTGCTGCCTG
TCTCTGGTCTTCCTCACCATGATCGCTAACGCCATGTTCTTTCGGACGGA
CGACAGCGTCAAACAACAGGTGTACCGGCTGGGCCCTCTGGTGTTCACTC
CGAGCAAGCTGTGGATCAGCTTTGCCAGCACACTCATCGTGTTTCCCGTC
AACTTCGTCATCGTGATGTTTGGGGTCTACTTCATTGTCGTCTTCTTTGC
GATGAAGGCGGACAAACGCGATGTAGTCAAGTGGGGAGTTCTACCCATCG
CCGACAATAGCCGTTGTGACGCCCATTTCTACCTGATCACCGTGTACACG
GGCATGAAGGCCGGCTCAGGGACCTCCTCCAGAGTCGGCATCATCCTACA
TGGGGAAAACGGCGATTCCGGGCCAAGACCACTGGCAGCATGTCAACAGC
AGGTCTTTAGGCGTGGCAGTGTGACCACCTTCCTTCTATCCACCCCTGAG
AGCCTCGGAGATCTGACCAACATCCACGTTTGGCACGACAGCTCCGGGCA
GGGCGGAGGAGCGAGCTGGTTTCTAGATCGCCTTGTTGTTGAGGACCTAC
AAAGCAACGTTCGGTACGTGTTTTTCTGCCAACGTTGGCTGGCGGTGGAG
ATGGAGGATGGGAAGGTGGACCGCTTCCTGAGCGCAGCCGGACGAGATGA
ACTCACCAACTTCTCATCAATTTTCCAAACCAAGACTCGCCAGGACATAA
GCGATGGTCACCTGTGGTTCTCGGTGGCCTCCCGTCCCACCCGGAGTAAC
TTCAGTCGTGTCCAGCGGGCCTCGTGCTGCCTGTCTCTGGTCTTCCTCAC
CATGATCGCTAACGCCATGTTCTTTCGGACGGACGACAGCGTCAAACAAC
AGGTGTACCGGCTGGGCCCTCTGGTGTTCACTCCGAGCAAGCTGTGGATC
AGCTTTGCCAGCACACTCATCGTGTTTCCCGTCAACTTCGTCATCGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000086 | genome | Sc0000086:1164369..1167736 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96191_cuf3 |
| Biotype | protein_coding |
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