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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96170_evm0 >transcript:BL96170_evm0-protein ID=transcript:BL96170_evm0-protein|Name=transcript:BL96170_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=300bp
MAAQDQEPHANAVRRRSYQDESYLRGFLGTVGDLQKAGVLQDVVLEVEGR
RFACHRLVLSAASPYFRAMLTSDMAESRQKTVVLQCSPCTRQPTSSNMAM
NVERSNCVDLYKFVDVFSVDTVRKVCLQHIAKYFTEVASSEEFCNLSVNQ
LTEIISHDELDVKEEATVWEAVVRLHHLPSILPHIRSNFLTSDDTAAILE
HPLVMEDPGSSEVIRNAVQKGNSDPKPRLGMIMEMALLINTCTDLTTDDL
LFMNPREGKNISCKSADAWRDLKTTLPGDTFVPRGSICPVARMYLPYLGA Run BLAST on NCBI mRNA from alignment at xpSc0039675:87406..90421+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96170_evm0 ID=transcript:BL96170_evm0|Name=transcript:BL96170_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=3016bp|location=Sequence derived from alignment at xpSc0039675:87406..90421+ (Branchiostoma lanceolatum)
ATGGCCGCCCAAGACCAAGAACCCCACGCCAACGCAGTTCGTCGTCGTTC
CTACCAAGACGAGAGCTATCTGCGCGGGTTTCTTGGAACTGTGGGTGACT
TACAGAAGGCTGGGGTACTGCAGGACGTCGTCCTTGAAGTCGAGGGCCGG
CGGTTTGCCTGCCATCGGCTTGTTCTGTCCGCGGCCAGCCCCTACTTTAG
GGCCATGTTAACAAGCGACATGGCGGAAAGTCGGCAGAAGACCGTTGTTT
TACAGGTAGGATTGATTAAACAGTGAACGTTCGAAGCATAAAGAGCATGT
TAAACCACGAAATGGTGTAAACATTTCCTGTACATTATAAATCTTTGTCC
CTTGCATACCCCCCTCCCCACCGACTGATGTATTTTGTGTTGTTTAATGT
CAAAGGTCAACTTGTGCAGCAATAGACATTTTATTGACTAAAAGGATATT
TCAGTTTTTAAAAAAAACAGATCATTGTTTAATTACAATGTATATGAAAT
AACAGGGCTGAAACTTGACCTTCACAACTGAATAGATTTGTGATAATTAT
TTCCCTGTTAGTATATATACCTTGATACTTAATGTATGTTGTAAACGTTT
GAACATTGCAGGTATGTTTGGGGAGATCCTGAGTTACATCTACTCGGGAA
CCCTCCATGTGTCCCTGGACAAAGTGCAGCCCCTGTACCAGGCAGCCGAC
CTCCTCCAACATGGCCATGAACGTGGAGCGCTCTAACTGTGTGGACCTGT
ACAAGTTTGTTGATGTTTTCTCTGTGGACACTGTCAGGAAAGTCTGCCTA
CAGCATATTGCTAAGTACTTTACTGAGGTTAGTCTTCATTATTTATAGGT
AAAGCATTTGTCCCTAATAGGAAGCTGATGTTGCATTTATATTGCACACA
CTGTGACAAAGATCAGAGAACTATCTACAGTCTTCGCCTAGAAACTTGGT
ATTGCGTTGGGATAAACTGGGGAAACTTTGTACTTCGAATCCTGCTTTTT
CTGAAGCACGGCTATACCAGATATTCAAACACAGATACAGAGCATTTATT
TCCTACTTTTGATTTGATTTTGTCATGTACACACGTAGCTTCTTGTATGT
TAGAACAAGATTAAGACACATATCTTCAAAACCTTCGTACATGTTCATGT
ACTCTTTACCTCCAGGTTGCCTCCAGCGAGGAGTTCTGCAACCTGAGTGT
GAATCAGCTGACTGAGATCATCAGCCACGATGAGCTGGATGTTAAAGAGG
AGGCAACAGTGTGGGAGGCTGTGGTGAGGTGGGTGCAGCACAGCAGGGAG
GACAGGTGGATATCAATGTTTTATTGGTTCAGCCAAGTCTTAACTAGCAA
AGGGCTATGACCAAACCAAGGTTTTGTCTGTGAGTTCTATTGTAGTCGGT
ACTTGAAATAGGTATAATGCATGAAGAATCTGTGTTGCCAAGAATTCAGC
TGATCCCATCCCTACCCTGTACCCTACAGACTGCACCACCTACCCAGCAT
CCTCCCTCACATCCGCTCTAACTTCCTGACGTCTGATGACACGGCAGCCA
TCTTGGAACACCCCCTAGTTATGGAGGATCCTGGGAGCTCTGAGGTCATC
AGGAATGCGGTACAGAAAGGGAACTCGGATCCGAAACCGAGGCTTGGGAT
GATCATGGAAATGGCTCTGCTGATCAATACATGTACAGATCTGACGTCAG
TATATACTTCTCATTTTTTTGTGATTAGAAACAATCCTTCTTGCACAATG
TTATTTTAAGTTTTGTGGTCCTGCAATACACATTTCCACAGTGATCATCA
TCTACTGAAAGCTTGTGCCTTGTATCTACTGGAGCCTAGTACTGATCTTG
ATATTTTCAGGGCTTTTTGCACAAGTGTGTCTTGTGGCATTATAAGGTCA
TGTCTAAACATAGGCCACAGCTGTACTTTAGGTTTGGTTTATAGATTGCC
ATGTGTTACAAGGCTTTTCAGCGTGATAGCTCGCAGGTGTTAATGGTGGC
AGATTTTAAGCTTGTCTATTACTGCCTTTGGTGCTGCTCAGCTTTTGCAG
TTATATAGCATGATAGAGACACAGCAAGCATTGTACAGTTGTAGCCCAGA
ATTTTACTTTCCTCCATTTCTTTTCTCGTAGTGGTTTTTGGTCGGCTATG
CAGACATGAGTGAACTCTGTGTTCCATAGTCATGTAAATATACTCCGAAG
CTGATCTTATACTGAAGCACATCTCCCCTAAGCTACAAGATTAAATTCAA
CAGTTGAAAGCAGTGTATGCTGTGTTTGAAGAAAATGTCCAGTTTTATTC
ACTGCTTAAATTTTATTATCCTCTCCAGGACAGATGACCTCCTCTTCATG
AACCCCCGGGAAGGGAAGAACATCAGCTGCAAGTACAGTCCGGAAAAACT
GCGTCCAGTTATAGCCATGACAGTGACCAGTGATAACAATATATACTTGA
TGACTGAAGACTCAGAGAGTAACGATCAGTTGTCCATGTTGAAGTACAAC
CATGCAGGGAATATGTGGGAACATGCAGGCATGTCATCGGTATCAAGGTT
GCTGGGGCCTGATGATTATTGGTCTTGCTACGACAAGAACCTTATCGAAG
TAGATCAGGTTTTATACTATCTTAGCATGGGAGGGAGAAGAGGCAGCGAA
TGGCAATTGGTGCATCTCACAAAGTACAACCGGCACACTGACCAGTGGCA
GAAGTGTTCACAGCTGCAAATTGACGAATCTGAAACCTACTGTGCAGCAT
TGTCCTGTGGTTCACACATTTATTTCCTCACAACCTTTGAAGTGCACCGC
TACGACCCGAGCCAGGACAGATGCCAGCTGCATATATTGTTTAAAGTCTA
TGATTATGTCGAAGAAGAGTTTTCAGTAGACACTCTGATACTTGTGTATG
ACAGGTCTGCTGATGCCTGGAGAGACTTGAAGACCACCCTGCCTGGTGAT
ACGTTTGTACCGCGTGGTTCCATATGCCCTGTGGCACGTATGTACCTGCC
ATATCTTGGTGCATAG Coding sequence (CDS) from alignment at xpSc0039675:87406..90421+ >transcript:BL96170_evm0 ID=transcript:BL96170_evm0|Name=transcript:BL96170_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=5418bp|location=Sequence derived from alignment at xpSc0039675:87406..90421+ (Branchiostoma lanceolatum)
ATGGCCGCCCAAGACCAAGAACCCCACGCCAACGCAGTTCGTCGTCGTTC
CTACCAAGACGAGAGCTATCTGCGCGGGTTTCTTGGAACTGTGGGTGACT
TACAGAAGGCTGGGGTACTGCAGGACGTCGTCCTTGAAGTCGAGGGCCGG
CGGTTTGCCTGCCATCGGCTTGTTCTGTCCGCGGCCAGCCCCTACTTTAG
GGCCATGTTAACAAGCGACATGGCGGAAAGTCGGCAGAAGACCGTTGTTT
TACAGTGCAGCCCCTGTACCAGGCAGCCGACCTCCTCCAACATGGCCATG
AACGTGGAGCGCTCTAACTGTGTGGACCTGTACAAGTTTGTTGATGTTTT
CTCTGTGGACACTGTCAGGAAAGTCTGCCTACAGCATATTGCTAAGTACT
TTACTGAGGTTGCCTCCAGCGAGGAGTTCTGCAACCTGAGTGTGAATCAG
CTGACTGAGATCATCAGCCACGATGAGCTGGATGTTAAAGAGGAGGCAAC
AGTGTGGGAGGCTGTGGTGAGACTGCACCACCTACCCAGCATCCTCCCTC
ACATCCGCTCTAACTTCCTGACGTCTGATGACACGGCAGCCATCTTGGAA
CACCCCCTAGTTATGGAGGATCCTGGGAGCTCTGAGGTCATCAGGAATGC
GGTACAGAAAGGGAACTCGGATCCGAAACCGAGGCTTGGGATGATCATGG
AAATGGCTCTGCTGATCAATACATGTACAGATCTGACGACAGATGACCTC
CTCTTCATGAACCCCCGGGAAGGGAAGAACATCAGCTGCAAGTCTGCTGA
TGCCTGGAGAGACTTGAAGACCACCCTGCCTGGTGATACGTTTGTACCGC
GTGGTTCCATATGCCCTGTGGCACGTATGTACCTGCCATATCTTGGTGCA
TAGATGGCCGCCCAAGACCAAGAACCCCACGCCAACGCAGTTCGTCGTCG
TTCCTACCAAGACGAGAGCTATCTGCGCGGGTTTCTTGGAACTGTGGGTG
ACTTACAGAAGGCTGGGGTACTGCAGGACGTCGTCCTTGAAGTCGAGGGC
CGGCGGTTTGCCTGCCATCGGCTTGTTCTGTCCGCGGCCAGCCCCTACTT
TAGGGCCATGTTAACAAGCGACATGGCGGAAAGTCGGCAGAAGACCGTTG
TTTTACAGTGCAGCCCCTGTACCAGGCAGCCGACCTCCTCCAACATGGCC
ATGAACGTGGAGCGCTCTAACTGTGTGGACCTGTACAAGTTTGTTGATGT
TTTCTCTGTGGACACTGTCAGGAAAGTCTGCCTACAGCATATTGCTAAGT
ACTTTACTGAGGTTGCCTCCAGCGAGGAGTTCTGCAACCTGAGTGTGAAT
CAGCTGACTGAGATCATCAGCCACGATGAGCTGGATGTTAAAGAGGAGGC
AACAGTGTGGGAGGCTGTGGTGAGACTGCACCACCTACCCAGCATCCTCC
CTCACATCCGCTCTAACTTCCTGACGTCTGATGACACGGCAGCCATCTTG
GAACACCCCCTAGTTATGGAGGATCCTGGGAGCTCTGAGGTCATCAGGAA
TGCGGTACAGAAAGGGAACTCGGATCCGAAACCGAGGCTTGGGATGATCA
TGGAAATGGCTCTGCTGATCAATACATGTACAGATCTGACGACAGATGAC
CTCCTCTTCATGAACCCCCGGGAAGGGAAGAACATCAGCTGCAAGTCTGC
TGATGCCTGGAGAGACTTGAAGACCACCCTGCCTGGTGATACGTTTGTAC
CGCGTGGTTCCATATGCCCTGTGGCACGTATGTACCTGCCATATCTTGGT
GCATAGATGGCCGCCCAAGACCAAGAACCCCACGCCAACGCAGTTCGTCG
TCGTTCCTACCAAGACGAGAGCTATCTGCGCGGGTTTCTTGGAACTGTGG
GTGACTTACAGAAGGCTGGGGTACTGCAGGACGTCGTCCTTGAAGTCGAG
GGCCGGCGGTTTGCCTGCCATCGGCTTGTTCTGTCCGCGGCCAGCCCCTA
CTTTAGGGCCATGTTAACAAGCGACATGGCGGAAAGTCGGCAGAAGACCG
TTGTTTTACAGTGCAGCCCCTGTACCAGGCAGCCGACCTCCTCCAACATG
GCCATGAACGTGGAGCGCTCTAACTGTGTGGACCTGTACAAGTTTGTTGA
TGTTTTCTCTGTGGACACTGTCAGGAAAGTCTGCCTACAGCATATTGCTA
AGTACTTTACTGAGGTTGCCTCCAGCGAGGAGTTCTGCAACCTGAGTGTG
AATCAGCTGACTGAGATCATCAGCCACGATGAGCTGGATGTTAAAGAGGA
GGCAACAGTGTGGGAGGCTGTGGTGAGACTGCACCACCTACCCAGCATCC
TCCCTCACATCCGCTCTAACTTCCTGACGTCTGATGACACGGCAGCCATC
TTGGAACACCCCCTAGTTATGGAGGATCCTGGGAGCTCTGAGGTCATCAG
GAATGCGGTACAGAAAGGGAACTCGGATCCGAAACCGAGGCTTGGGATGA
TCATGGAAATGGCTCTGCTGATCAATACATGTACAGATCTGACGACAGAT
GACCTCCTCTTCATGAACCCCCGGGAAGGGAAGAACATCAGCTGCAAGTC
TGCTGATGCCTGGAGAGACTTGAAGACCACCCTGCCTGGTGATACGTTTG
TACCGCGTGGTTCCATATGCCCTGTGGCACGTATGTACCTGCCATATCTT
GGTGCATAGATGGCCGCCCAAGACCAAGAACCCCACGCCAACGCAGTTCG
TCGTCGTTCCTACCAAGACGAGAGCTATCTGCGCGGGTTTCTTGGAACTG
TGGGTGACTTACAGAAGGCTGGGGTACTGCAGGACGTCGTCCTTGAAGTC
GAGGGCCGGCGGTTTGCCTGCCATCGGCTTGTTCTGTCCGCGGCCAGCCC
CTACTTTAGGGCCATGTTAACAAGCGACATGGCGGAAAGTCGGCAGAAGA
CCGTTGTTTTACAGTGCAGCCCCTGTACCAGGCAGCCGACCTCCTCCAAC
ATGGCCATGAACGTGGAGCGCTCTAACTGTGTGGACCTGTACAAGTTTGT
TGATGTTTTCTCTGTGGACACTGTCAGGAAAGTCTGCCTACAGCATATTG
CTAAGTACTTTACTGAGGTTGCCTCCAGCGAGGAGTTCTGCAACCTGAGT
GTGAATCAGCTGACTGAGATCATCAGCCACGATGAGCTGGATGTTAAAGA
GGAGGCAACAGTGTGGGAGGCTGTGGTGAGACTGCACCACCTACCCAGCA
TCCTCCCTCACATCCGCTCTAACTTCCTGACGTCTGATGACACGGCAGCC
ATCTTGGAACACCCCCTAGTTATGGAGGATCCTGGGAGCTCTGAGGTCAT
CAGGAATGCGGTACAGAAAGGGAACTCGGATCCGAAACCGAGGCTTGGGA
TGATCATGGAAATGGCTCTGCTGATCAATACATGTACAGATCTGACGACA
GATGACCTCCTCTTCATGAACCCCCGGGAAGGGAAGAACATCAGCTGCAA
GTCTGCTGATGCCTGGAGAGACTTGAAGACCACCCTGCCTGGTGATACGT
TTGTACCGCGTGGTTCCATATGCCCTGTGGCACGTATGTACCTGCCATAT
CTTGGTGCATAGATGGCCGCCCAAGACCAAGAACCCCACGCCAACGCAGT
TCGTCGTCGTTCCTACCAAGACGAGAGCTATCTGCGCGGGTTTCTTGGAA
CTGTGGGTGACTTACAGAAGGCTGGGGTACTGCAGGACGTCGTCCTTGAA
GTCGAGGGCCGGCGGTTTGCCTGCCATCGGCTTGTTCTGTCCGCGGCCAG
CCCCTACTTTAGGGCCATGTTAACAAGCGACATGGCGGAAAGTCGGCAGA
AGACCGTTGTTTTACAGTGCAGCCCCTGTACCAGGCAGCCGACCTCCTCC
AACATGGCCATGAACGTGGAGCGCTCTAACTGTGTGGACCTGTACAAGTT
TGTTGATGTTTTCTCTGTGGACACTGTCAGGAAAGTCTGCCTACAGCATA
TTGCTAAGTACTTTACTGAGGTTGCCTCCAGCGAGGAGTTCTGCAACCTG
AGTGTGAATCAGCTGACTGAGATCATCAGCCACGATGAGCTGGATGTTAA
AGAGGAGGCAACAGTGTGGGAGGCTGTGGTGAGACTGCACCACCTACCCA
GCATCCTCCCTCACATCCGCTCTAACTTCCTGACGTCTGATGACACGGCA
GCCATCTTGGAACACCCCCTAGTTATGGAGGATCCTGGGAGCTCTGAGGT
CATCAGGAATGCGGTACAGAAAGGGAACTCGGATCCGAAACCGAGGCTTG
GGATGATCATGGAAATGGCTCTGCTGATCAATACATGTACAGATCTGACG
ACAGATGACCTCCTCTTCATGAACCCCCGGGAAGGGAAGAACATCAGCTG
CAAGTCTGCTGATGCCTGGAGAGACTTGAAGACCACCCTGCCTGGTGATA
CGTTTGTACCGCGTGGTTCCATATGCCCTGTGGCACGTATGTACCTGCCA
TATCTTGGTGCATAGATGGCCGCCCAAGACCAAGAACCCCACGCCAACGC
AGTTCGTCGTCGTTCCTACCAAGACGAGAGCTATCTGCGCGGGTTTCTTG
GAACTGTGGGTGACTTACAGAAGGCTGGGGTACTGCAGGACGTCGTCCTT
GAAGTCGAGGGCCGGCGGTTTGCCTGCCATCGGCTTGTTCTGTCCGCGGC
CAGCCCCTACTTTAGGGCCATGTTAACAAGCGACATGGCGGAAAGTCGGC
AGAAGACCGTTGTTTTACAGTGCAGCCCCTGTACCAGGCAGCCGACCTCC
TCCAACATGGCCATGAACGTGGAGCGCTCTAACTGTGTGGACCTGTACAA
GTTTGTTGATGTTTTCTCTGTGGACACTGTCAGGAAAGTCTGCCTACAGC
ATATTGCTAAGTACTTTACTGAGGTTGCCTCCAGCGAGGAGTTCTGCAAC
CTGAGTGTGAATCAGCTGACTGAGATCATCAGCCACGATGAGCTGGATGT
TAAAGAGGAGGCAACAGTGTGGGAGGCTGTGGTGAGACTGCACCACCTAC
CCAGCATCCTCCCTCACATCCGCTCTAACTTCCTGACGTCTGATGACACG
GCAGCCATCTTGGAACACCCCCTAGTTATGGAGGATCCTGGGAGCTCTGA
GGTCATCAGGAATGCGGTACAGAAAGGGAACTCGGATCCGAAACCGAGGC
TTGGGATGATCATGGAAATGGCTCTGCTGATCAATACATGTACAGATCTG
ACGACAGATGACCTCCTCTTCATGAACCCCCGGGAAGGGAAGAACATCAG
CTGCAAGTCTGCTGATGCCTGGAGAGACTTGAAGACCACCCTGCCTGGTG
ATACGTTTGTACCGCGTGGTTCCATATGCCCTGTGGCACGTATGTACCTG
CCATATCTTGGTGCATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0039675 | genome | xpSc0039675:87406..90421 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96170_evm0 |
| Biotype | protein_coding |
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