transcript:BL96115_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96115_evm1
Unique Nametranscript:BL96115_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96115_evm1

>transcript:BL96115_evm1-protein ID=transcript:BL96115_evm1-protein|Name=transcript:BL96115_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=122bp
AIVNVSSIWGLRASPAGLAYCMSKAAVDQFTRCVALELASKQIRVNSVNP
GLIPTEMLNLLGLTEEQIAQLLEHAKSTHALGRAGKVTEVAKTIAFLSSS
DASFITGAQVPVDGGRHAMCPR
Run BLAST on NCBI

mRNA from alignment at Sc0000539:112237..115151-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96115_evm1 ID=transcript:BL96115_evm1|Name=transcript:BL96115_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2915bp|location=Sequence derived from alignment at Sc0000539:112237..115151- (Branchiostoma lanceolatum)
GCGCCATTGTGAATGTATCCAGTATTTGGGGTTTGCGTGCGGTGAGCTGA
GTATTTCTTTAGATATATAAATATTCTTTGAATTACCAAATTGATCTTGA
ATGTCTAGAGCTTCCTTGTAGCACTTCAATTTTGATTGACCTGCTAGATG
TGTAACCATATTTATCACCTGGAATAAGTTTTGTTGACTTAATATGAAAC
TGCCAAGTAATATTTGCAGATGTTTGCATTTTACAGCAAAAAAATAAGAC
TTTTGATAATTGTTTTCAAGTAAATTTCATGCTTTATATCTAAATGTGCT
CTGATTTATTTATAGAGTCCTGCTGGTCTTGCATACTGTATGAGCAAGGC
AGCTGTGGACCAGTTCACAAGATGCGTGGCGCTTGGTTAGTAAATGTACA
CTTTGCTTCCAGGGTTTGATTTTACATTTACGTGGTTATTTACCATAATT
CAGATTGACCAAGCAATGATAAACAAAAACCGTCGGAAAAAAACAGGAAC
ACCCTGATACAACAATCCCACACAATCTCGTACATTCGCGTTAGACATTT
ATTTATAAACCTGTTATGTTTGTTACACCGTACCTGAAGACCCAACTACA
AACTACCTTTCATTTTTCAGAGCTGGCTTCCAAACAAATTAGGGTCAACT
CCGTCAAGTAAGTTCATTGCCTTCGAAGCTTTGCCAAGAATGTTATGTTT
TCGTATGTTTGCGTGTGTGTGCTTGTGTGCGTATGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCTAT
TGACATAAAAAATCGAACAAAAGGCTTTTGCTTCTTCTAAAATAAATGAT
ATAAATAATGCTCTCTTTCCACAGTCCTGGTTTGATTCCGACAGAGATGT
TGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNTGTTATGTTTTCGTATGTTTGCGTGTGTGTGCTTGTGTGCGTATGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GATTCTATTGACATAAAAAATCGAACAAAAGGCTTTTGCTTCTTCTAAAA
TAAATGATATAAATAATGCTCTCTTTCCACAGTCCTGGTTTGATTCCGAC
AGAGATGTTGAATCTTCTAGGATTAACTGAGGAGCAAATCGCCCAAGTAA
GGGAATTCTTTCTTTTGTTTGATAACTTTTTCTTTTTTTCTAGCAATCCT
AAGGTATGGTCCAACATGTACATGCTTTTAGATATTTTTTCCTTCTCTTT
TTTTAGCTCCTAGAACATGCCAAGTCGACACACGCCCTGGGCAGGGCAGG
GAAGGTTACAGAAGTCGCCAAGACGATCGCGTTCCTCTCCTCGTCGGACG
CGTCGTTCATTACCGGCGCCCAGGTCCCCGTGGACGGCGGACGCCACGCG
ATGTGCCCGCGCTAA

Coding sequence (CDS) from alignment at Sc0000539:112237..115151-

>transcript:BL96115_evm1 ID=transcript:BL96115_evm1|Name=transcript:BL96115_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=1845bp|location=Sequence derived from alignment at Sc0000539:112237..115151- (Branchiostoma lanceolatum)
GCCATTGTGAATGTATCCAGTATTTGGGGTTTGCGTGCGAGTCCTGCTGG
TCTTGCATACTGTATGAGCAAGGCAGCTGTGGACCAGTTCACAAGATGCG
TGGCGCTTGAGCTGGCTTCCAAACAAATTAGGGTCAACTCCGTCAATCCT
GGTTTGATTCCGACAGAGATGTTGAATCTTCTAGGATTAACTGAGGAGCA
AATCGCCCAACTCCTAGAACATGCCAAGTCGACACACGCCCTGGGCAGGG
CAGGGAAGGTTACAGAAGTCGCCAAGACGATCGCGTTCCTCTCCTCGTCG
GACGCGTCGTTCATTACCGGCGCCCAGGTCCCCGTGGACGGCGGACGCCA
CGCGATGTGCCCGCGCTAAGCCATTGTGAATGTATCCAGTATTTGGGGTT
TGCGTGCGAGTCCTGCTGGTCTTGCATACTGTATGAGCAAGGCAGCTGTG
GACCAGTTCACAAGATGCGTGGCGCTTGAGCTGGCTTCCAAACAAATTAG
GGTCAACTCCGTCAATCCTGGTTTGATTCCGACAGAGATGTTGAATCTTC
TAGGATTAACTGAGGAGCAAATCGCCCAACTCCTAGAACATGCCAAGTCG
ACACACGCCCTGGGCAGGGCAGGGAAGGTTACAGAAGTCGCCAAGACGAT
CGCGTTCCTCTCCTCGTCGGACGCGTCGTTCATTACCGGCGCCCAGGTCC
CCGTGGACGGCGGACGCCACGCGATGTGCCCGCGCTAAGCCATTGTGAAT
GTATCCAGTATTTGGGGTTTGCGTGCGAGTCCTGCTGGTCTTGCATACTG
TATGAGCAAGGCAGCTGTGGACCAGTTCACAAGATGCGTGGCGCTTGAGC
TGGCTTCCAAACAAATTAGGGTCAACTCCGTCAATCCTGGTTTGATTCCG
ACAGAGATGTTGAATCTTCTAGGATTAACTGAGGAGCAAATCGCCCAACT
CCTAGAACATGCCAAGTCGACACACGCCCTGGGCAGGGCAGGGAAGGTTA
CAGAAGTCGCCAAGACGATCGCGTTCCTCTCCTCGTCGGACGCGTCGTTC
ATTACCGGCGCCCAGGTCCCCGTGGACGGCGGACGCCACGCGATGTGCCC
GCGCTAAGCCATTGTGAATGTATCCAGTATTTGGGGTTTGCGTGCGAGTC
CTGCTGGTCTTGCATACTGTATGAGCAAGGCAGCTGTGGACCAGTTCACA
AGATGCGTGGCGCTTGAGCTGGCTTCCAAACAAATTAGGGTCAACTCCGT
CAATCCTGGTTTGATTCCGACAGAGATGTTGAATCTTCTAGGATTAACTG
AGGAGCAAATCGCCCAACTCCTAGAACATGCCAAGTCGACACACGCCCTG
GGCAGGGCAGGGAAGGTTACAGAAGTCGCCAAGACGATCGCGTTCCTCTC
CTCGTCGGACGCGTCGTTCATTACCGGCGCCCAGGTCCCCGTGGACGGCG
GACGCCACGCGATGTGCCCGCGCTAAGCCATTGTGAATGTATCCAGTATT
TGGGGTTTGCGTGCGAGTCCTGCTGGTCTTGCATACTGTATGAGCAAGGC
AGCTGTGGACCAGTTCACAAGATGCGTGGCGCTTGAGCTGGCTTCCAAAC
AAATTAGGGTCAACTCCGTCAATCCTGGTTTGATTCCGACAGAGATGTTG
AATCTTCTAGGATTAACTGAGGAGCAAATCGCCCAACTCCTAGAACATGC
CAAGTCGACACACGCCCTGGGCAGGGCAGGGAAGGTTACAGAAGTCGCCA
AGACGATCGCGTTCCTCTCCTCGTCGGACGCGTCGTTCATTACCGGCGCC
CAGGTCCCCGTGGACGGCGGACGCCACGCGATGTGCCCGCGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96115gene:BL96115Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96115_evm1transcript:BL96115_evm1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96115_evm1-E1BL96115_evm1-E1-1564476830-479831Branchiostoma lanceolatumexon
BL96115_evm1-E2BL96115_evm1-E2-1564476830-479828Branchiostoma lanceolatumexon
BL96115_evm1-E3BL96115_evm1-E3-1564476830-479826Branchiostoma lanceolatumexon
BL96115_evm1-E4BL96115_evm1-E4-1564476830-479824Branchiostoma lanceolatumexon
BL96115_evm1-E5BL96115_evm1-E5-1564476830-479822Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000539genomeSc0000539:112237..115151 -
Properties
Property NameValue
Transcript idBL96115_evm1
Biotypeprotein_coding