|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96087_evm1 >transcript:BL96087_evm1-protein ID=transcript:BL96087_evm1-protein|Name=transcript:BL96087_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=315bp
MQRSITICAVLFIVLYILIWSALRETSVVPKLVTRVMPTQPPGVWTFEKL
APDSAWQYNATALEDVRKITARLKIKKRLQEKKLGGVIGTALPIGHYKTC
AVVGNSGVLLGSRCGAEIDSMDYVIRIDLPVLRGFEKDVGRRTNMTVLNL
KTPRRMAKSSQLKNRSRDVYKSRLEDVKDGVLLADPHARSQVTKAVGVYK
LSISLLILKGGIKHKMDPIASDAAKKRIAAPTTGLVSVLMMTTFCDRSYM
YGFFPFMEDANNQSIPYHYYPDDKLHIPFGVGFEAKHDVKTEYEFLRDLH
RRGVLKMHLGPCGNQ Run BLAST on NCBI mRNA from alignment at Sc0000414:67322..69004- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96087_evm1 ID=transcript:BL96087_evm1|Name=transcript:BL96087_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1683bp|location=Sequence derived from alignment at Sc0000414:67322..69004- (Branchiostoma lanceolatum)
ATGCAGAGAAGTATCACTATCTGTGCAGTGTTGTTCATAGTGCTGTACAT
CCTGATATGGTCTGCCCTAAGGTAACAAAGTTTTGTGTACAAAATCAAAC
TCTGCTGGGTGCAGATTTGTTGAACTCTTATCCTTAACGGTGTGTGATAT
TGTACATTTTGTAAAAGGTAAATATGATGAGTAAACATACTGTATGTACT
ATACGTTATAGACTGCCTTGCACTGGTCGTTGAAGGTGTCGATTGCCGAA
AGTTCATGACTATTGTATGTATACTCACTGAACTTTAGAGAAACGTCAGT
GGTGCCAAAGCTCGTGACACGTGTGATGCCTACTCAGCCACCTGGTGTTT
GGACATTTGAGAAGTTGGCGCCAGATTCGGCATGGCAGTACAATGCTACA
GCTTTGGAAGACGTTAGGTCAGTCCAACATTGTTTTCTACTTTCCCCCAG
TCTATTCATTACATTTTATTCAGCGAAAACTCCTTAAATACCGGCAAATA
TATTCTTCTGCTGGGTATAATCAAGTGAACAATTGCGATCGTTTTTTTCA
ATCCTTGAACAAAACCACACCCAGTTATCGTTCTGCGTAAAGATGATGTC
TGCGTGATAATTGACGTTTTGGCGACGCCTCAGGGTAGATGTATTTTGTG
CATACTAGATGATAACAAGAGTCGACTTCACATGGTATGGGGGGCAGTGA
GTTAGTCCACAGTACAGCAATTGTTTACTGTGTATGATGTCCGAGTCTCG
GTTTGTCTTACAGAAAGATCACCGCGAGACTGAAGATTAAGAAACGTTTG
CAGGAGAAGAAGTTGGGGGGCGTAATCGGTACAGCGCTTCCCATTGGCCA
CTACAAGACATGCGCTGTCGTAGGCAATAGTGGTGTTCTACTGGGAAGCC
GCTGTGGTGCAGAAATCGACTCCATGGATTACGTCATCAGAATAGACCTG
CCCGTTCTTAGAGGGTTTGAAAAAGATGTTGGCCGGCGAACCAACATGAC
AGTGCTCAATCTGAAAACACCCAGAAGAATGGCGAAGTCCTCACAATTGA
AAAATAGATCTCGAGATGTGTACAAGAGTCGCTTAGAGGACGTTAAAGAT
GGCGTTCTGCTTGCTGACCCTCATGCAAGATCTCAAGTTACTAAGGCTGT
AGGAGTGTACAAACTGTCAATTTCATTGCTCATTTTGAAGGGTGGAATAA
AACATAAAATGGACCCGTAAGTAGCAGTTTTATCTGTCTATAAAAGAACA
GATGTCCGAGTCAGTGTTTTTTTCTATTTCACAAAAAAATAAAAAAAACA
TCAATATCATGGCCTATAATGCTAATTGGGCCAATGATGGATATGATTAA
TCTATTTTGTCTTACTTCCTTTTTGCTTTCTCAACCAGGATTGCATCCGA
CGCAGCCAAGAAGAGGATCGCGGCGCCGACCACCGGCCTCGTCAGTGTGC
TGATGATGACGACGTTCTGTGACCGCTCCTACATGTATGGATTCTTCCCT
TTCATGGAAGATGCGAACAACCAGTCCATTCCCTACCACTACTATCCGGA
CGACAAACTCCATATTCCGTTTGGGGTTGGGTTCGAAGCTAAGCATGACG
TGAAGACGGAATATGAGTTTCTCCGGGATCTACACAGACGAGGGGTGCTG
AAGATGCACCTCGGTCCATGCGGAAATCAATGA Coding sequence (CDS) from alignment at Sc0000414:67322..69004- >transcript:BL96087_evm1 ID=transcript:BL96087_evm1|Name=transcript:BL96087_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=3792bp|location=Sequence derived from alignment at Sc0000414:67322..69004- (Branchiostoma lanceolatum)
ATGCAGAGAAGTATCACTATCTGTGCAGTGTTGTTCATAGTGCTGTACAT
CCTGATATGGTCTGCCCTAAGAGAAACGTCAGTGGTGCCAAAGCTCGTGA
CACGTGTGATGCCTACTCAGCCACCTGGTGTTTGGACATTTGAGAAGTTG
GCGCCAGATTCGGCATGGCAGTACAATGCTACAGCTTTGGAAGACGTTAG
AAAGATCACCGCGAGACTGAAGATTAAGAAACGTTTGCAGGAGAAGAAGT
TGGGGGGCGTAATCGGTACAGCGCTTCCCATTGGCCACTACAAGACATGC
GCTGTCGTAGGCAATAGTGGTGTTCTACTGGGAAGCCGCTGTGGTGCAGA
AATCGACTCCATGGATTACGTCATCAGAATAGACCTGCCCGTTCTTAGAG
GGTTTGAAAAAGATGTTGGCCGGCGAACCAACATGACAGTGCTCAATCTG
AAAACACCCAGAAGAATGGCGAAGTCCTCACAATTGAAAAATAGATCTCG
AGATGTGTACAAGAGTCGCTTAGAGGACGTTAAAGATGGCGTTCTGCTTG
CTGACCCTCATGCAAGATCTCAAGTTACTAAGGCTGTAGGAGTGTACAAA
CTGTCAATTTCATTGCTCATTTTGAAGGGTGGAATAAAACATAAAATGGA
CCCGATTGCATCCGACGCAGCCAAGAAGAGGATCGCGGCGCCGACCACCG
GCCTCGTCAGTGTGCTGATGATGACGACGTTCTGTGACCGCTCCTACATG
TATGGATTCTTCCCTTTCATGGAAGATGCGAACAACCAGTCCATTCCCTA
CCACTACTATCCGGACGACAAACTCCATATTCCGTTTGGGGTTGGGTTCG
AAGCTAAGCATGACGTGAAGACGGAATATGAGTTTCTCCGGGATCTACAC
AGACGAGGGGTGCTGAAGATGCACCTCGGTCCATGCGGAAATCAATGAAT
GCAGAGAAGTATCACTATCTGTGCAGTGTTGTTCATAGTGCTGTACATCC
TGATATGGTCTGCCCTAAGAGAAACGTCAGTGGTGCCAAAGCTCGTGACA
CGTGTGATGCCTACTCAGCCACCTGGTGTTTGGACATTTGAGAAGTTGGC
GCCAGATTCGGCATGGCAGTACAATGCTACAGCTTTGGAAGACGTTAGAA
AGATCACCGCGAGACTGAAGATTAAGAAACGTTTGCAGGAGAAGAAGTTG
GGGGGCGTAATCGGTACAGCGCTTCCCATTGGCCACTACAAGACATGCGC
TGTCGTAGGCAATAGTGGTGTTCTACTGGGAAGCCGCTGTGGTGCAGAAA
TCGACTCCATGGATTACGTCATCAGAATAGACCTGCCCGTTCTTAGAGGG
TTTGAAAAAGATGTTGGCCGGCGAACCAACATGACAGTGCTCAATCTGAA
AACACCCAGAAGAATGGCGAAGTCCTCACAATTGAAAAATAGATCTCGAG
ATGTGTACAAGAGTCGCTTAGAGGACGTTAAAGATGGCGTTCTGCTTGCT
GACCCTCATGCAAGATCTCAAGTTACTAAGGCTGTAGGAGTGTACAAACT
GTCAATTTCATTGCTCATTTTGAAGGGTGGAATAAAACATAAAATGGACC
CGATTGCATCCGACGCAGCCAAGAAGAGGATCGCGGCGCCGACCACCGGC
CTCGTCAGTGTGCTGATGATGACGACGTTCTGTGACCGCTCCTACATGTA
TGGATTCTTCCCTTTCATGGAAGATGCGAACAACCAGTCCATTCCCTACC
ACTACTATCCGGACGACAAACTCCATATTCCGTTTGGGGTTGGGTTCGAA
GCTAAGCATGACGTGAAGACGGAATATGAGTTTCTCCGGGATCTACACAG
ACGAGGGGTGCTGAAGATGCACCTCGGTCCATGCGGAAATCAATGAATGC
AGAGAAGTATCACTATCTGTGCAGTGTTGTTCATAGTGCTGTACATCCTG
ATATGGTCTGCCCTAAGAGAAACGTCAGTGGTGCCAAAGCTCGTGACACG
TGTGATGCCTACTCAGCCACCTGGTGTTTGGACATTTGAGAAGTTGGCGC
CAGATTCGGCATGGCAGTACAATGCTACAGCTTTGGAAGACGTTAGAAAG
ATCACCGCGAGACTGAAGATTAAGAAACGTTTGCAGGAGAAGAAGTTGGG
GGGCGTAATCGGTACAGCGCTTCCCATTGGCCACTACAAGACATGCGCTG
TCGTAGGCAATAGTGGTGTTCTACTGGGAAGCCGCTGTGGTGCAGAAATC
GACTCCATGGATTACGTCATCAGAATAGACCTGCCCGTTCTTAGAGGGTT
TGAAAAAGATGTTGGCCGGCGAACCAACATGACAGTGCTCAATCTGAAAA
CACCCAGAAGAATGGCGAAGTCCTCACAATTGAAAAATAGATCTCGAGAT
GTGTACAAGAGTCGCTTAGAGGACGTTAAAGATGGCGTTCTGCTTGCTGA
CCCTCATGCAAGATCTCAAGTTACTAAGGCTGTAGGAGTGTACAAACTGT
CAATTTCATTGCTCATTTTGAAGGGTGGAATAAAACATAAAATGGACCCG
ATTGCATCCGACGCAGCCAAGAAGAGGATCGCGGCGCCGACCACCGGCCT
CGTCAGTGTGCTGATGATGACGACGTTCTGTGACCGCTCCTACATGTATG
GATTCTTCCCTTTCATGGAAGATGCGAACAACCAGTCCATTCCCTACCAC
TACTATCCGGACGACAAACTCCATATTCCGTTTGGGGTTGGGTTCGAAGC
TAAGCATGACGTGAAGACGGAATATGAGTTTCTCCGGGATCTACACAGAC
GAGGGGTGCTGAAGATGCACCTCGGTCCATGCGGAAATCAATGAATGCAG
AGAAGTATCACTATCTGTGCAGTGTTGTTCATAGTGCTGTACATCCTGAT
ATGGTCTGCCCTAAGAGAAACGTCAGTGGTGCCAAAGCTCGTGACACGTG
TGATGCCTACTCAGCCACCTGGTGTTTGGACATTTGAGAAGTTGGCGCCA
GATTCGGCATGGCAGTACAATGCTACAGCTTTGGAAGACGTTAGAAAGAT
CACCGCGAGACTGAAGATTAAGAAACGTTTGCAGGAGAAGAAGTTGGGGG
GCGTAATCGGTACAGCGCTTCCCATTGGCCACTACAAGACATGCGCTGTC
GTAGGCAATAGTGGTGTTCTACTGGGAAGCCGCTGTGGTGCAGAAATCGA
CTCCATGGATTACGTCATCAGAATAGACCTGCCCGTTCTTAGAGGGTTTG
AAAAAGATGTTGGCCGGCGAACCAACATGACAGTGCTCAATCTGAAAACA
CCCAGAAGAATGGCGAAGTCCTCACAATTGAAAAATAGATCTCGAGATGT
GTACAAGAGTCGCTTAGAGGACGTTAAAGATGGCGTTCTGCTTGCTGACC
CTCATGCAAGATCTCAAGTTACTAAGGCTGTAGGAGTGTACAAACTGTCA
ATTTCATTGCTCATTTTGAAGGGTGGAATAAAACATAAAATGGACCCGAT
TGCATCCGACGCAGCCAAGAAGAGGATCGCGGCGCCGACCACCGGCCTCG
TCAGTGTGCTGATGATGACGACGTTCTGTGACCGCTCCTACATGTATGGA
TTCTTCCCTTTCATGGAAGATGCGAACAACCAGTCCATTCCCTACCACTA
CTATCCGGACGACAAACTCCATATTCCGTTTGGGGTTGGGTTCGAAGCTA
AGCATGACGTGAAGACGGAATATGAGTTTCTCCGGGATCTACACAGACGA
GGGGTGCTGAAGATGCACCTCGGTCCATGCGGAAATCAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000414 | genome | Sc0000414:67322..69004 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96087_evm1 |
| Biotype | protein_coding |
|
