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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96049_evm1 >transcript:BL96049_evm1-protein ID=transcript:BL96049_evm1-protein|Name=transcript:BL96049_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=419bp
MEEGNDIWQLFVKGLEGKTMLIRIHKDATVDELINKISERNNIPPDVQRI
LYTTKQLEYGAGKYLSDYHMHDNCTLFVVLRLHGGGNSMGSTNSEYNNAG
GNNTRSNSTGGNNTGGNNTGGNNTGGNNNEAINTEGDNTEGNNIGVDNTG
GNNTGGNNTRGSNTTSPPRKELDEDVETTEAPDMISWEDDPNTPRAKMSC
GHAITPETLTTYCESLLSAGKYIFKCPYISPTGEYCGKEWSYLEVRRLAV
LNADEKKQFETKISDNYLRKGMGIQECPKCHSMCERVDKKDKRVVCPLCS
ARGTNEYHFCWHCLHEWVGSGIDRCGNDDCSGEDKRLKILRDCNRKTIVG
VAGCPAIRACLKCGMLIEHDRACKHMVCTCGQKFCFICLKPAVNGRYQCG
TYNSPCKIANVQTTIPGDN Run BLAST on NCBI mRNA from alignment at Sc0000357:90168..92169- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96049_evm1 ID=transcript:BL96049_evm1|Name=transcript:BL96049_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2002bp|location=Sequence derived from alignment at Sc0000357:90168..92169- (Branchiostoma lanceolatum)
ATGGAGGAGGGCAACGACATCTGGCAACTATTCGTCAAGGGACTCGAGGG
GAAAACCATGCTTATTAGAATCCACAAGGTATTTAGTACTTAGAATCATA
CATAGACAGACAAGGATTGTGGTTGAAAATGTATACCCATAGGGGTTCTA
CAAAATCTTGGCTTATCCAATAGGACTCTATGCCACCATATGTTTGGGAT
ACAGTTGCCATTATGTCATGACAGTATGCCCTGACACACGCACAACTGTT
CTTACAGGATGCCACAGTGGATGAACTGATAAATAAGATCAGTGAGCGGA
ACAACATACCTCCTGATGTGCAGCGCATCCTGTACACGACCAAGCAACTG
GAGTACGGCGCGGGAAAGTATCTCTCTGACTACCACATGCACGACAACTG
TACTCTTTTTGTCGTCTTGCGTTTGCATGGAGGCGGCAACAGTATGGGAA
GCACCAACTCTGAATACAATAACGCCGGGGGCAACAACACCAGAAGTAAC
AGCACCGGGGGTAACAACACCGGGGGCAACAACACCGGTGGCAACAACAC
CGGGGGCAACAACAACGAGGCTATCAACACTGAAGGAGACAACACTGAAG
GAAACAACATTGGAGTCGACAACACCGGGGGTAATAACACCGGGGGAAAC
AACACCAGGGGAAGCAACACCACATCACCTCCACGGAAAGAGCTGGATGA
GGATGTGGAGACCACTGAGGCTCCTGACATGATCAGCTGGGAGGATGACC
CCAACACTCCCCGCGCCAAGATGTCCTGCGGACACGCCATCACGCCAGAG
ACACTCACCACCTACTGCGAGAGTCTTCTGAGGTAAACAGGAGTCACTAT
CTAAGTCACCTAATATGTTTAAGATACTTAGATAGTCAGAGCAATCACAA
AGTCTTATCCAAATAATGGCAGTTCAAATAAGCAGTTTCTGATTACCTTG
TTTCAGCCGCACTGAAATGGGGCAGGCAGAAAATGAAACGATATTTCCTA
CCAGGTGCTTAGTGATTCATCACTTTAATAAACAGAATGTTTCTTATCTA
TGTTTCAGCGCTGGGAAGTACATCTTCAAGTGCCCTTACATCAGTCCAAC
TGGAGAGTATTGTGGGAAGGAGTGGTCCTATCTGGAGGTCCGTCGTCTTG
CTGTCCTCAACGCGGATGAAAAGAAGCAGTTCGAGACCAAGATCTCCGAC
AACTACCTTCGCAAGGGGATGGGCATCCAGGAGTGCCCAAAGTGTCACTC
CATGTGCGAACGGGTCGACAAGAAAGACAAGCGCGTGGTGTGTCCGCTGT
GTTCGGCTAGGGGTACGAACGAGTACCACTTCTGCTGGCACTGCCTGCAT
GAGTGGGTCGGAAGCGGTATCGACAGGTGCGGTAATGATGACTGTAGTGG
TGAAGACAAACGTCTGAAGATCCTCCGCGACTGCAACAGGAAGACCATCG
TGGGCGTGGCTGGGTGTCCTGCCATCAGGGCGTGTCTGAAGTGCGGAATG
CTCATCGAGCACGACAGGGCCTGCAAGCACATGGTATGATTTTGTAGTCG
TATACGATCTAGCCAATGCCCTAAATAGTACTAGTTTTACAATAGTATGG
TATGTTCCTGTTTATGATAATAAATTTATTACAACAAGAAAACCAACATT
CTCTCCCCATGTCATTAACATTACATCCTTGATGCATTCAAGACTTTTTA
TCCGGAAAAATAAAGGCGAAATAGCTGAAATCATTCTATGGGTAAAATCG
GTTACAATCTGATGACCTTTGGAGTTTCAAGTACAGCGTTTAATGCACTT
TTAACTACATGTACACGTCTACAGTAACTGTCAAACTCGACATCATGTCT
GCTATTTTCTCCATTCCTAGGTCTGCACATGTGGCCAGAAGTTCTGCTTC
ATCTGCCTCAAACCCGCAGTGAATGGGCGCTACCAGTGCGGCACGTACAA
CAGCCCGTGTAAGATCGCCAACGTGCAGACCACCATCCCCGGGGACAACT
GA Coding sequence (CDS) from alignment at Sc0000357:90168..92169- >transcript:BL96049_evm1 ID=transcript:BL96049_evm1|Name=transcript:BL96049_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=5040bp|location=Sequence derived from alignment at Sc0000357:90168..92169- (Branchiostoma lanceolatum)
ATGGAGGAGGGCAACGACATCTGGCAACTATTCGTCAAGGGACTCGAGGG
GAAAACCATGCTTATTAGAATCCACAAGGATGCCACAGTGGATGAACTGA
TAAATAAGATCAGTGAGCGGAACAACATACCTCCTGATGTGCAGCGCATC
CTGTACACGACCAAGCAACTGGAGTACGGCGCGGGAAAGTATCTCTCTGA
CTACCACATGCACGACAACTGTACTCTTTTTGTCGTCTTGCGTTTGCATG
GAGGCGGCAACAGTATGGGAAGCACCAACTCTGAATACAATAACGCCGGG
GGCAACAACACCAGAAGTAACAGCACCGGGGGTAACAACACCGGGGGCAA
CAACACCGGTGGCAACAACACCGGGGGCAACAACAACGAGGCTATCAACA
CTGAAGGAGACAACACTGAAGGAAACAACATTGGAGTCGACAACACCGGG
GGTAATAACACCGGGGGAAACAACACCAGGGGAAGCAACACCACATCACC
TCCACGGAAAGAGCTGGATGAGGATGTGGAGACCACTGAGGCTCCTGACA
TGATCAGCTGGGAGGATGACCCCAACACTCCCCGCGCCAAGATGTCCTGC
GGACACGCCATCACGCCAGAGACACTCACCACCTACTGCGAGAGTCTTCT
GAGCGCTGGGAAGTACATCTTCAAGTGCCCTTACATCAGTCCAACTGGAG
AGTATTGTGGGAAGGAGTGGTCCTATCTGGAGGTCCGTCGTCTTGCTGTC
CTCAACGCGGATGAAAAGAAGCAGTTCGAGACCAAGATCTCCGACAACTA
CCTTCGCAAGGGGATGGGCATCCAGGAGTGCCCAAAGTGTCACTCCATGT
GCGAACGGGTCGACAAGAAAGACAAGCGCGTGGTGTGTCCGCTGTGTTCG
GCTAGGGGTACGAACGAGTACCACTTCTGCTGGCACTGCCTGCATGAGTG
GGTCGGAAGCGGTATCGACAGGTGCGGTAATGATGACTGTAGTGGTGAAG
ACAAACGTCTGAAGATCCTCCGCGACTGCAACAGGAAGACCATCGTGGGC
GTGGCTGGGTGTCCTGCCATCAGGGCGTGTCTGAAGTGCGGAATGCTCAT
CGAGCACGACAGGGCCTGCAAGCACATGGTCTGCACATGTGGCCAGAAGT
TCTGCTTCATCTGCCTCAAACCCGCAGTGAATGGGCGCTACCAGTGCGGC
ACGTACAACAGCCCGTGTAAGATCGCCAACGTGCAGACCACCATCCCCGG
GGACAACTGAATGGAGGAGGGCAACGACATCTGGCAACTATTCGTCAAGG
GACTCGAGGGGAAAACCATGCTTATTAGAATCCACAAGGATGCCACAGTG
GATGAACTGATAAATAAGATCAGTGAGCGGAACAACATACCTCCTGATGT
GCAGCGCATCCTGTACACGACCAAGCAACTGGAGTACGGCGCGGGAAAGT
ATCTCTCTGACTACCACATGCACGACAACTGTACTCTTTTTGTCGTCTTG
CGTTTGCATGGAGGCGGCAACAGTATGGGAAGCACCAACTCTGAATACAA
TAACGCCGGGGGCAACAACACCAGAAGTAACAGCACCGGGGGTAACAACA
CCGGGGGCAACAACACCGGTGGCAACAACACCGGGGGCAACAACAACGAG
GCTATCAACACTGAAGGAGACAACACTGAAGGAAACAACATTGGAGTCGA
CAACACCGGGGGTAATAACACCGGGGGAAACAACACCAGGGGAAGCAACA
CCACATCACCTCCACGGAAAGAGCTGGATGAGGATGTGGAGACCACTGAG
GCTCCTGACATGATCAGCTGGGAGGATGACCCCAACACTCCCCGCGCCAA
GATGTCCTGCGGACACGCCATCACGCCAGAGACACTCACCACCTACTGCG
AGAGTCTTCTGAGCGCTGGGAAGTACATCTTCAAGTGCCCTTACATCAGT
CCAACTGGAGAGTATTGTGGGAAGGAGTGGTCCTATCTGGAGGTCCGTCG
TCTTGCTGTCCTCAACGCGGATGAAAAGAAGCAGTTCGAGACCAAGATCT
CCGACAACTACCTTCGCAAGGGGATGGGCATCCAGGAGTGCCCAAAGTGT
CACTCCATGTGCGAACGGGTCGACAAGAAAGACAAGCGCGTGGTGTGTCC
GCTGTGTTCGGCTAGGGGTACGAACGAGTACCACTTCTGCTGGCACTGCC
TGCATGAGTGGGTCGGAAGCGGTATCGACAGGTGCGGTAATGATGACTGT
AGTGGTGAAGACAAACGTCTGAAGATCCTCCGCGACTGCAACAGGAAGAC
CATCGTGGGCGTGGCTGGGTGTCCTGCCATCAGGGCGTGTCTGAAGTGCG
GAATGCTCATCGAGCACGACAGGGCCTGCAAGCACATGGTCTGCACATGT
GGCCAGAAGTTCTGCTTCATCTGCCTCAAACCCGCAGTGAATGGGCGCTA
CCAGTGCGGCACGTACAACAGCCCGTGTAAGATCGCCAACGTGCAGACCA
CCATCCCCGGGGACAACTGAATGGAGGAGGGCAACGACATCTGGCAACTA
TTCGTCAAGGGACTCGAGGGGAAAACCATGCTTATTAGAATCCACAAGGA
TGCCACAGTGGATGAACTGATAAATAAGATCAGTGAGCGGAACAACATAC
CTCCTGATGTGCAGCGCATCCTGTACACGACCAAGCAACTGGAGTACGGC
GCGGGAAAGTATCTCTCTGACTACCACATGCACGACAACTGTACTCTTTT
TGTCGTCTTGCGTTTGCATGGAGGCGGCAACAGTATGGGAAGCACCAACT
CTGAATACAATAACGCCGGGGGCAACAACACCAGAAGTAACAGCACCGGG
GGTAACAACACCGGGGGCAACAACACCGGTGGCAACAACACCGGGGGCAA
CAACAACGAGGCTATCAACACTGAAGGAGACAACACTGAAGGAAACAACA
TTGGAGTCGACAACACCGGGGGTAATAACACCGGGGGAAACAACACCAGG
GGAAGCAACACCACATCACCTCCACGGAAAGAGCTGGATGAGGATGTGGA
GACCACTGAGGCTCCTGACATGATCAGCTGGGAGGATGACCCCAACACTC
CCCGCGCCAAGATGTCCTGCGGACACGCCATCACGCCAGAGACACTCACC
ACCTACTGCGAGAGTCTTCTGAGCGCTGGGAAGTACATCTTCAAGTGCCC
TTACATCAGTCCAACTGGAGAGTATTGTGGGAAGGAGTGGTCCTATCTGG
AGGTCCGTCGTCTTGCTGTCCTCAACGCGGATGAAAAGAAGCAGTTCGAG
ACCAAGATCTCCGACAACTACCTTCGCAAGGGGATGGGCATCCAGGAGTG
CCCAAAGTGTCACTCCATGTGCGAACGGGTCGACAAGAAAGACAAGCGCG
TGGTGTGTCCGCTGTGTTCGGCTAGGGGTACGAACGAGTACCACTTCTGC
TGGCACTGCCTGCATGAGTGGGTCGGAAGCGGTATCGACAGGTGCGGTAA
TGATGACTGTAGTGGTGAAGACAAACGTCTGAAGATCCTCCGCGACTGCA
ACAGGAAGACCATCGTGGGCGTGGCTGGGTGTCCTGCCATCAGGGCGTGT
CTGAAGTGCGGAATGCTCATCGAGCACGACAGGGCCTGCAAGCACATGGT
CTGCACATGTGGCCAGAAGTTCTGCTTCATCTGCCTCAAACCCGCAGTGA
ATGGGCGCTACCAGTGCGGCACGTACAACAGCCCGTGTAAGATCGCCAAC
GTGCAGACCACCATCCCCGGGGACAACTGAATGGAGGAGGGCAACGACAT
CTGGCAACTATTCGTCAAGGGACTCGAGGGGAAAACCATGCTTATTAGAA
TCCACAAGGATGCCACAGTGGATGAACTGATAAATAAGATCAGTGAGCGG
AACAACATACCTCCTGATGTGCAGCGCATCCTGTACACGACCAAGCAACT
GGAGTACGGCGCGGGAAAGTATCTCTCTGACTACCACATGCACGACAACT
GTACTCTTTTTGTCGTCTTGCGTTTGCATGGAGGCGGCAACAGTATGGGA
AGCACCAACTCTGAATACAATAACGCCGGGGGCAACAACACCAGAAGTAA
CAGCACCGGGGGTAACAACACCGGGGGCAACAACACCGGTGGCAACAACA
CCGGGGGCAACAACAACGAGGCTATCAACACTGAAGGAGACAACACTGAA
GGAAACAACATTGGAGTCGACAACACCGGGGGTAATAACACCGGGGGAAA
CAACACCAGGGGAAGCAACACCACATCACCTCCACGGAAAGAGCTGGATG
AGGATGTGGAGACCACTGAGGCTCCTGACATGATCAGCTGGGAGGATGAC
CCCAACACTCCCCGCGCCAAGATGTCCTGCGGACACGCCATCACGCCAGA
GACACTCACCACCTACTGCGAGAGTCTTCTGAGCGCTGGGAAGTACATCT
TCAAGTGCCCTTACATCAGTCCAACTGGAGAGTATTGTGGGAAGGAGTGG
TCCTATCTGGAGGTCCGTCGTCTTGCTGTCCTCAACGCGGATGAAAAGAA
GCAGTTCGAGACCAAGATCTCCGACAACTACCTTCGCAAGGGGATGGGCA
TCCAGGAGTGCCCAAAGTGTCACTCCATGTGCGAACGGGTCGACAAGAAA
GACAAGCGCGTGGTGTGTCCGCTGTGTTCGGCTAGGGGTACGAACGAGTA
CCACTTCTGCTGGCACTGCCTGCATGAGTGGGTCGGAAGCGGTATCGACA
GGTGCGGTAATGATGACTGTAGTGGTGAAGACAAACGTCTGAAGATCCTC
CGCGACTGCAACAGGAAGACCATCGTGGGCGTGGCTGGGTGTCCTGCCAT
CAGGGCGTGTCTGAAGTGCGGAATGCTCATCGAGCACGACAGGGCCTGCA
AGCACATGGTCTGCACATGTGGCCAGAAGTTCTGCTTCATCTGCCTCAAA
CCCGCAGTGAATGGGCGCTACCAGTGCGGCACGTACAACAGCCCGTGTAA
GATCGCCAACGTGCAGACCACCATCCCCGGGGACAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000357 | genome | Sc0000357:90168..92169 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96049_evm1 |
| Biotype | protein_coding |
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