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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96048_evm2 >transcript:BL96048_evm2-protein ID=transcript:BL96048_evm2-protein|Name=transcript:BL96048_evm2|organism=Branchiostoma lanceolatum|type=polypeptide|length=408bp
MTASHSCRLSEGSDTWIPRGRDFLRAASSFCTLFIASVKRNRFDHNDKVW
DENADLWFYLYATRNFPINYIIVMRGQRPSDSQPLSKSSEEPTKDATVDE
LIKKISAKNNIPPETQRILYTTKQLEYGVGKYLSDYQMQNESTLFVVLRL
PGGSCTPRKQLDEDVETTDAPDMISWEDDPNTPRAKMSCGHAITPETLTT
YCESLLSAGKYIFKCPYISPTTEYCGKEWSYLEVRRLAVLSLDEKKQFEI
KISDNYLRKGMGIQECPKCHSMCERVDKKDKRVVCPLCSASDGAEFHFCW
YCLHEWVGRSIDKCNNADCNGEDKRLKILRDCNRKAIVGVAGCPAVRACL
KCGMLIEHDRACKHMACICGQKFCFICLKPTEEGRYQCGTYNSPCEVAGV
QTTIPGDD Run BLAST on NCBI mRNA from alignment at Sc0000357:81093..84570- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96048_evm2 ID=transcript:BL96048_evm2|Name=transcript:BL96048_evm2|organism=Branchiostoma lanceolatum|type=mRNA|length=3478bp|location=Sequence derived from alignment at Sc0000357:81093..84570- (Branchiostoma lanceolatum)
ATGACAGCCTCCCACTCATGCAGGCTGTCTGAAGGCAGCGACACCTGGAT
ACCAAGAGGACGGGACTTCCTCAGAGCTGCAAGCTCCTTCTGTACCCTGT
TCATGTAAGTGGAGGCAAGTAAATTTCATGGATGACATTAGCACACACAA
AGACACATTGATTTATGCCTGATATTGAAAAAAAAAATTCCCCTACAGAG
ATGGTTAACAAAAGAGAGTATGGAAAGAAAATATGTTAGTGTGATAGGTC
TCTTTTGCAAATAGAAATCTCCTAGATTTCTGCATGATTTCTGTAAACTT
TTTGAGGCTAGATTTCTATATGTGAAATAAGATGAGAGAGACTCAGCAGC
TATAATAGTTCGGATACCAAGCAAGAAACTAGTTGCGTAAAGTTTACTTC
TCTGCACACGGCCTTATTAGACTCCAAATCTAATGTGAGATATTTAGAAG
AAAGATGTGTCTTCCAATACAGAAAAGATTTTGCCTGTCGCAAAGTTTCT
GCAAGCCGGACATTATATAGCCTATCAAAGACCATTTATCAAGTATCCTT
GGTGTTCTTGGCAGTTTTTCTTTGTTTTGGGTCCAGTTCAATTTCACGGC
TTTAGAGCTCAATGGAGACCGGTATTGTACAGTACAATGTGTCGTTGTTG
CTGTTGTTGTACATGTAACCACAGTGCAAGCGTGAAGCGTAACCGTTTTG
ATCACAATGACAAAGTCTGGGATGAAAACGCCGACCTGTGGTTTTATTTG
TATGCAACTAGGAATTTCCCTATCAATTACATCATTGTGATGCGTGGACA
GCGGCCATCTGATTCACAGCCTCTTTCCAAGAGTTCTGAAGAGCCGACAA
AGGTGACCGGGGAAGCCAGGAAGACACCCCTCTGACTCTTCCCGTTGAAC
AAAAGGCCATACAGTCTTCAACGAAACTTTGTATTCGACAGCGAGGAATG
TTACATTGACCACTCCAGAAATGATACACAAGTTTCGAGTCAGGCTTTTT
GTCCAGAAGGGTAATGCTACTCGAGGCTCGAGGGCAAACCTGTTGGGCAC
AGCTGTCACTTCCGGGATGAAGTTCATATTTTTACTTTTTATGAAATATA
ACGTTAACGTTAGATATTTCGGCAAAACAAACTACAACCAACCTGGATGC
GAACTGCTTCTCCATCGATCACAGTCTTGTCTTCAAAGTGGACTTGAACA
AATCAGAAGGAGAGATTAGACGAAATGGGGAGTTCAGACATGTCAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCTAAAGATTAATAGATCAATAAAAATAAATAAGA
TTCATACTCTTCCAGGATGCAACCGTGGATGAGTTGATCAAGAAGATCAG
TGCGAAGAACAATATACCACCAGAGACCCAGCGCATCCTGTACACGACCA
AGCAGCTGGAGTATGGCGTGGGGAAATATCTCTCTGACTACCAGATGCAA
AATGAGTCCACCCTGTTTGTTGTCCTGCGGCTGCCTGGAGGCAGCTGTAC
GCCTCGGAAACAGCTGGACGAGGACGTGGAGACGACAGATGCACCTGACA
TGATCAGCTGGGAGGATGACCCCAACACTCCCCGCGCCAAGATGTCCTGC
GGGCACGCCATCACACCAGAGACACTCACCACCTACTGCGAGAGTCTTCT
GAGGTAAACACTATGTTTCAAACAAACAAAACTGCTGTCATCTAGAGTCA
ATCCATTGCTGTCTCCAGCTTTAAATTTTTGTCCATCCCGCTCATTGTCT
AGGAGTCTATGTTGTTGATTTTTGCTGTTAAATTTGTCGTTTTAAGATTA
CGAAAAATTTTACATGTTTTTTCATCACTTTCACATTATGGAGTTCAGCT
TTTTTTGAAGGACCTACGTCTGACGGGATGAAGTTTTTGTCCATCCTAAA
AAGCAAATTACGAACACGACAGGGCCTGCAAGCACATGGTATGATACTGA
GGAGTGATGATACATGTTGTTAAGATGGTTTTTGCCTTGCCTGACTTTAG
GACTGGTTTACACCTATCTGTGCAAATTTCCATTCTTGGACAGGATGGGT
CCTGGAGACCTTCTCCTTGCTGCCTAATCCTATAGGCTGTAACCAATACA
AAGTTGGTGCCAAAAGGCTACTTCAATAGAGAAAAGGTTGAACAAATGGA
AAGAGGGTGGTTTATTAGGTACCAGTAATGTTGAAAACTATGCAAATCTG
TATGCACCTATTTTTGCATCCCAGCCACCTCGCCAATCAAATGAAACTTT
GTTGACACACCCATGGGAAGCAACTGTGTGTCAAGCTTTTGATGTTATCT
CATATAGCATTTGTCCCTTTACGAAACAGAATGTTTTATGCCAATGTTTC
AGTGCTGGGAAGTACATCTTCAAGTGTCCGTACATCAGTCCAACTACTGA
GTATTGTGGGAAGGAGTGGTCTTATCTTGAGGTCCGTCGTCTTGCCGTCC
TCTCCCTGGATGAAAAGAAGCAGTTCGAGATCAAGATCTCCGACAACTAC
CTCCGCAAGGGGATGGGCATCCAGGAGTGCCCAAAGTGTCACTCCATGTG
CGAGCGTGTCGACAAGAAAGACAAGCGCGTGGTGTGTCCGCTGTGTTCGG
CCTCAGATGGGGCTGAGTTCCACTTCTGCTGGTACTGCCTGCATGAGTGG
GTCGGGAGAAGCATTGACAAGTGCAACAATGCAGACTGCAATGGGGAGGA
CAAGCGTCTGAAGATTCTCCGCGACTGCAACAGGAAGGCCATCGTGGGCG
TGGCTGGGTGTCCTGCCGTCAGGGCCTGCCTGAAGTGCGGCATGCTCATT
GAACACGACAGGGCCTGCAAGCACATGGTATGATGCTGAGGAGTGATGAT
ACTTGTCTTTTAAAATGTTTTTTGCATTGGATGTGTTTACACTTATCTGT
GCATGATTATTTAGAATCATAAAAGGTATTGTCTTTATTACTTTCACAGC
ATCTACTGGCTTTGTGATGTCTTATACTTATGTAACTGGAAGTTAGAATG
TCTACAGAAGCACAATGACAAAATTGATTTTGTACAAAAATTGCAATAAA
CCTGGAGGCACAAGGAATCCTTAGTTCAACTCCACTTGCTGCTTTATGTA
ACCACCTATCAAAGTTGACTCTGTGTCTCATATCTCCTATATCCAGGCCT
GCATCTGTGGTCAGAAGTTCTGCTTCATCTGCCTCAAACCCACAGAGGAA
GGGCGCTACCAGTGCGGCACGTACAACAGTCCGTGTGAGGTCGCCGGCGT
GCAGACAACCATCCCCGGGGACGACTGA Coding sequence (CDS) from alignment at Sc0000357:81093..84570- >transcript:BL96048_evm2 ID=transcript:BL96048_evm2|Name=transcript:BL96048_evm2|organism=Branchiostoma lanceolatum|type=CDS|length=6135bp|location=Sequence derived from alignment at Sc0000357:81093..84570- (Branchiostoma lanceolatum)
ATGACAGCCTCCCACTCATGCAGGCTGTCTGAAGGCAGCGACACCTGGAT
ACCAAGAGGACGGGACTTCCTCAGAGCTGCAAGCTCCTTCTGTACCCTGT
TCATTGCAAGCGTGAAGCGTAACCGTTTTGATCACAATGACAAAGTCTGG
GATGAAAACGCCGACCTGTGGTTTTATTTGTATGCAACTAGGAATTTCCC
TATCAATTACATCATTGTGATGCGTGGACAGCGGCCATCTGATTCACAGC
CTCTTTCCAAGAGTTCTGAAGAGCCGACAAAGGATGCAACCGTGGATGAG
TTGATCAAGAAGATCAGTGCGAAGAACAATATACCACCAGAGACCCAGCG
CATCCTGTACACGACCAAGCAGCTGGAGTATGGCGTGGGGAAATATCTCT
CTGACTACCAGATGCAAAATGAGTCCACCCTGTTTGTTGTCCTGCGGCTG
CCTGGAGGCAGCTGTACGCCTCGGAAACAGCTGGACGAGGACGTGGAGAC
GACAGATGCACCTGACATGATCAGCTGGGAGGATGACCCCAACACTCCCC
GCGCCAAGATGTCCTGCGGGCACGCCATCACACCAGAGACACTCACCACC
TACTGCGAGAGTCTTCTGAGTGCTGGGAAGTACATCTTCAAGTGTCCGTA
CATCAGTCCAACTACTGAGTATTGTGGGAAGGAGTGGTCTTATCTTGAGG
TCCGTCGTCTTGCCGTCCTCTCCCTGGATGAAAAGAAGCAGTTCGAGATC
AAGATCTCCGACAACTACCTCCGCAAGGGGATGGGCATCCAGGAGTGCCC
AAAGTGTCACTCCATGTGCGAGCGTGTCGACAAGAAAGACAAGCGCGTGG
TGTGTCCGCTGTGTTCGGCCTCAGATGGGGCTGAGTTCCACTTCTGCTGG
TACTGCCTGCATGAGTGGGTCGGGAGAAGCATTGACAAGTGCAACAATGC
AGACTGCAATGGGGAGGACAAGCGTCTGAAGATTCTCCGCGACTGCAACA
GGAAGGCCATCGTGGGCGTGGCTGGGTGTCCTGCCGTCAGGGCCTGCCTG
AAGTGCGGCATGCTCATTGAACACGACAGGGCCTGCAAGCACATGGCCTG
CATCTGTGGTCAGAAGTTCTGCTTCATCTGCCTCAAACCCACAGAGGAAG
GGCGCTACCAGTGCGGCACGTACAACAGTCCGTGTGAGGTCGCCGGCGTG
CAGACAACCATCCCCGGGGACGACTGAATGACAGCCTCCCACTCATGCAG
GCTGTCTGAAGGCAGCGACACCTGGATACCAAGAGGACGGGACTTCCTCA
GAGCTGCAAGCTCCTTCTGTACCCTGTTCATTGCAAGCGTGAAGCGTAAC
CGTTTTGATCACAATGACAAAGTCTGGGATGAAAACGCCGACCTGTGGTT
TTATTTGTATGCAACTAGGAATTTCCCTATCAATTACATCATTGTGATGC
GTGGACAGCGGCCATCTGATTCACAGCCTCTTTCCAAGAGTTCTGAAGAG
CCGACAAAGGATGCAACCGTGGATGAGTTGATCAAGAAGATCAGTGCGAA
GAACAATATACCACCAGAGACCCAGCGCATCCTGTACACGACCAAGCAGC
TGGAGTATGGCGTGGGGAAATATCTCTCTGACTACCAGATGCAAAATGAG
TCCACCCTGTTTGTTGTCCTGCGGCTGCCTGGAGGCAGCTGTACGCCTCG
GAAACAGCTGGACGAGGACGTGGAGACGACAGATGCACCTGACATGATCA
GCTGGGAGGATGACCCCAACACTCCCCGCGCCAAGATGTCCTGCGGGCAC
GCCATCACACCAGAGACACTCACCACCTACTGCGAGAGTCTTCTGAGTGC
TGGGAAGTACATCTTCAAGTGTCCGTACATCAGTCCAACTACTGAGTATT
GTGGGAAGGAGTGGTCTTATCTTGAGGTCCGTCGTCTTGCCGTCCTCTCC
CTGGATGAAAAGAAGCAGTTCGAGATCAAGATCTCCGACAACTACCTCCG
CAAGGGGATGGGCATCCAGGAGTGCCCAAAGTGTCACTCCATGTGCGAGC
GTGTCGACAAGAAAGACAAGCGCGTGGTGTGTCCGCTGTGTTCGGCCTCA
GATGGGGCTGAGTTCCACTTCTGCTGGTACTGCCTGCATGAGTGGGTCGG
GAGAAGCATTGACAAGTGCAACAATGCAGACTGCAATGGGGAGGACAAGC
GTCTGAAGATTCTCCGCGACTGCAACAGGAAGGCCATCGTGGGCGTGGCT
GGGTGTCCTGCCGTCAGGGCCTGCCTGAAGTGCGGCATGCTCATTGAACA
CGACAGGGCCTGCAAGCACATGGCCTGCATCTGTGGTCAGAAGTTCTGCT
TCATCTGCCTCAAACCCACAGAGGAAGGGCGCTACCAGTGCGGCACGTAC
AACAGTCCGTGTGAGGTCGCCGGCGTGCAGACAACCATCCCCGGGGACGA
CTGAATGACAGCCTCCCACTCATGCAGGCTGTCTGAAGGCAGCGACACCT
GGATACCAAGAGGACGGGACTTCCTCAGAGCTGCAAGCTCCTTCTGTACC
CTGTTCATTGCAAGCGTGAAGCGTAACCGTTTTGATCACAATGACAAAGT
CTGGGATGAAAACGCCGACCTGTGGTTTTATTTGTATGCAACTAGGAATT
TCCCTATCAATTACATCATTGTGATGCGTGGACAGCGGCCATCTGATTCA
CAGCCTCTTTCCAAGAGTTCTGAAGAGCCGACAAAGGATGCAACCGTGGA
TGAGTTGATCAAGAAGATCAGTGCGAAGAACAATATACCACCAGAGACCC
AGCGCATCCTGTACACGACCAAGCAGCTGGAGTATGGCGTGGGGAAATAT
CTCTCTGACTACCAGATGCAAAATGAGTCCACCCTGTTTGTTGTCCTGCG
GCTGCCTGGAGGCAGCTGTACGCCTCGGAAACAGCTGGACGAGGACGTGG
AGACGACAGATGCACCTGACATGATCAGCTGGGAGGATGACCCCAACACT
CCCCGCGCCAAGATGTCCTGCGGGCACGCCATCACACCAGAGACACTCAC
CACCTACTGCGAGAGTCTTCTGAGTGCTGGGAAGTACATCTTCAAGTGTC
CGTACATCAGTCCAACTACTGAGTATTGTGGGAAGGAGTGGTCTTATCTT
GAGGTCCGTCGTCTTGCCGTCCTCTCCCTGGATGAAAAGAAGCAGTTCGA
GATCAAGATCTCCGACAACTACCTCCGCAAGGGGATGGGCATCCAGGAGT
GCCCAAAGTGTCACTCCATGTGCGAGCGTGTCGACAAGAAAGACAAGCGC
GTGGTGTGTCCGCTGTGTTCGGCCTCAGATGGGGCTGAGTTCCACTTCTG
CTGGTACTGCCTGCATGAGTGGGTCGGGAGAAGCATTGACAAGTGCAACA
ATGCAGACTGCAATGGGGAGGACAAGCGTCTGAAGATTCTCCGCGACTGC
AACAGGAAGGCCATCGTGGGCGTGGCTGGGTGTCCTGCCGTCAGGGCCTG
CCTGAAGTGCGGCATGCTCATTGAACACGACAGGGCCTGCAAGCACATGG
CCTGCATCTGTGGTCAGAAGTTCTGCTTCATCTGCCTCAAACCCACAGAG
GAAGGGCGCTACCAGTGCGGCACGTACAACAGTCCGTGTGAGGTCGCCGG
CGTGCAGACAACCATCCCCGGGGACGACTGAATGACAGCCTCCCACTCAT
GCAGGCTGTCTGAAGGCAGCGACACCTGGATACCAAGAGGACGGGACTTC
CTCAGAGCTGCAAGCTCCTTCTGTACCCTGTTCATTGCAAGCGTGAAGCG
TAACCGTTTTGATCACAATGACAAAGTCTGGGATGAAAACGCCGACCTGT
GGTTTTATTTGTATGCAACTAGGAATTTCCCTATCAATTACATCATTGTG
ATGCGTGGACAGCGGCCATCTGATTCACAGCCTCTTTCCAAGAGTTCTGA
AGAGCCGACAAAGGATGCAACCGTGGATGAGTTGATCAAGAAGATCAGTG
CGAAGAACAATATACCACCAGAGACCCAGCGCATCCTGTACACGACCAAG
CAGCTGGAGTATGGCGTGGGGAAATATCTCTCTGACTACCAGATGCAAAA
TGAGTCCACCCTGTTTGTTGTCCTGCGGCTGCCTGGAGGCAGCTGTACGC
CTCGGAAACAGCTGGACGAGGACGTGGAGACGACAGATGCACCTGACATG
ATCAGCTGGGAGGATGACCCCAACACTCCCCGCGCCAAGATGTCCTGCGG
GCACGCCATCACACCAGAGACACTCACCACCTACTGCGAGAGTCTTCTGA
GTGCTGGGAAGTACATCTTCAAGTGTCCGTACATCAGTCCAACTACTGAG
TATTGTGGGAAGGAGTGGTCTTATCTTGAGGTCCGTCGTCTTGCCGTCCT
CTCCCTGGATGAAAAGAAGCAGTTCGAGATCAAGATCTCCGACAACTACC
TCCGCAAGGGGATGGGCATCCAGGAGTGCCCAAAGTGTCACTCCATGTGC
GAGCGTGTCGACAAGAAAGACAAGCGCGTGGTGTGTCCGCTGTGTTCGGC
CTCAGATGGGGCTGAGTTCCACTTCTGCTGGTACTGCCTGCATGAGTGGG
TCGGGAGAAGCATTGACAAGTGCAACAATGCAGACTGCAATGGGGAGGAC
AAGCGTCTGAAGATTCTCCGCGACTGCAACAGGAAGGCCATCGTGGGCGT
GGCTGGGTGTCCTGCCGTCAGGGCCTGCCTGAAGTGCGGCATGCTCATTG
AACACGACAGGGCCTGCAAGCACATGGCCTGCATCTGTGGTCAGAAGTTC
TGCTTCATCTGCCTCAAACCCACAGAGGAAGGGCGCTACCAGTGCGGCAC
GTACAACAGTCCGTGTGAGGTCGCCGGCGTGCAGACAACCATCCCCGGGG
ACGACTGAATGACAGCCTCCCACTCATGCAGGCTGTCTGAAGGCAGCGAC
ACCTGGATACCAAGAGGACGGGACTTCCTCAGAGCTGCAAGCTCCTTCTG
TACCCTGTTCATTGCAAGCGTGAAGCGTAACCGTTTTGATCACAATGACA
AAGTCTGGGATGAAAACGCCGACCTGTGGTTTTATTTGTATGCAACTAGG
AATTTCCCTATCAATTACATCATTGTGATGCGTGGACAGCGGCCATCTGA
TTCACAGCCTCTTTCCAAGAGTTCTGAAGAGCCGACAAAGGATGCAACCG
TGGATGAGTTGATCAAGAAGATCAGTGCGAAGAACAATATACCACCAGAG
ACCCAGCGCATCCTGTACACGACCAAGCAGCTGGAGTATGGCGTGGGGAA
ATATCTCTCTGACTACCAGATGCAAAATGAGTCCACCCTGTTTGTTGTCC
TGCGGCTGCCTGGAGGCAGCTGTACGCCTCGGAAACAGCTGGACGAGGAC
GTGGAGACGACAGATGCACCTGACATGATCAGCTGGGAGGATGACCCCAA
CACTCCCCGCGCCAAGATGTCCTGCGGGCACGCCATCACACCAGAGACAC
TCACCACCTACTGCGAGAGTCTTCTGAGTGCTGGGAAGTACATCTTCAAG
TGTCCGTACATCAGTCCAACTACTGAGTATTGTGGGAAGGAGTGGTCTTA
TCTTGAGGTCCGTCGTCTTGCCGTCCTCTCCCTGGATGAAAAGAAGCAGT
TCGAGATCAAGATCTCCGACAACTACCTCCGCAAGGGGATGGGCATCCAG
GAGTGCCCAAAGTGTCACTCCATGTGCGAGCGTGTCGACAAGAAAGACAA
GCGCGTGGTGTGTCCGCTGTGTTCGGCCTCAGATGGGGCTGAGTTCCACT
TCTGCTGGTACTGCCTGCATGAGTGGGTCGGGAGAAGCATTGACAAGTGC
AACAATGCAGACTGCAATGGGGAGGACAAGCGTCTGAAGATTCTCCGCGA
CTGCAACAGGAAGGCCATCGTGGGCGTGGCTGGGTGTCCTGCCGTCAGGG
CCTGCCTGAAGTGCGGCATGCTCATTGAACACGACAGGGCCTGCAAGCAC
ATGGCCTGCATCTGTGGTCAGAAGTTCTGCTTCATCTGCCTCAAACCCAC
AGAGGAAGGGCGCTACCAGTGCGGCACGTACAACAGTCCGTGTGAGGTCG
CCGGCGTGCAGACAACCATCCCCGGGGACGACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000357 | genome | Sc0000357:81093..84570 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96048_evm2 |
| Biotype | protein_coding |
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