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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96039_evm1 >transcript:BL96039_evm1-protein ID=transcript:BL96039_evm1-protein|Name=transcript:BL96039_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=183bp
MNKAAYLLLLTLLVAFVQAGEVNDLLKSWKDLETLKNIASGDKALYNDAA
FQKEAEETLDRIRRVVTNMTPDERQNMRLSVAKHIGPQGAQKILAFSKIN
LVLISSRTGQVLSTADCWDICTVLRTWNDRQRLVFCCMFFVRQRDIVRDP
GMTQPGLEESVFYVVLDAGPGVEVERLVPLHAT Run BLAST on NCBI mRNA from alignment at Sc0000332:251561..257118+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96039_evm1 ID=transcript:BL96039_evm1|Name=transcript:BL96039_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=5558bp|location=Sequence derived from alignment at Sc0000332:251561..257118+ (Branchiostoma lanceolatum)
ATGAATAAGGCAGCTTATCTGTTGCTTCTGACTCTTCTAGTGGCGTTTGT
GCAAGCGGGGGAGGGTACGTATTGTTCACTTATTCATTTATTCCACGTGG
GGAAAAAGAGCACACAATGCGTTTCCCGCCATTACTTTAAGTTGTTTTAC
TGTCATTTATTGTGACCCTGATTTGGTGCTGGTATGAAAAACATTTGCAG
GAAGGCAATAACTACCATTTGGCATAAAAATCGATTAATAGGGAGAATCA
TTAATGTTTAAACCTTAGAACCAGTATCTTAAACAATACGTTGAAATCAA
CATTATTTTTCTTTTCATTTATTCATATACTTGTACGTAGACTTCCGAAA
GTCGCCGTACTTTTGTTGTGTCAACAAGAAATTTATTATAGCCCCGCGGG
AAAAGTTGTCAATGTTACAGATGGAATTGTGCCATAAACCGACACAATCA
CAACATATCTTCCCCGTTGTTTTGAAAGTCTCTCGAATCCTGTCCTACAT
CTATACATAATTCTCGAGACTTGGGAGACAATATTCCGTATTATATAAGT
TAGATCTATAGAAACCGAGGTAACATACGTGTCATATAAACTAATGAAAT
TGTTGAAACGTTTATACAATTTCACAAGATCATAGAAGTGATTTTGAAAT
GTGCTTGCTTTGATTCCTTGTAGTGAACGACTTCTTAAAGTCATGGGAAG
ACTTGGAAACCCTGAAAAATATTGCCAGCGGTGACAAGGCACTGTACAAT
AGTAAGTTGGAATGAAACTTACAAAACCGACTTAGCGGCCTGTACTTGTT
AGTTTTTGATATTTTCAATTGATCTCAGTTAGTAGAATAAAAGAAATAAA
GTTTCAATNTTAGGCCGCCAGCTGGTAGTTTGGTACCATGAATGTTCTAA
TCGGTCCATAGGTCGGTCCACTGATTTTTTACGGACCGGTTTTTTTGGAC
CGGTCCATTAAGAAATACCGGTTTTGTACCGGTACACGGTACCGGTACCC
ACCCCTACTACGGGATAAAAAAATGTCACCACCAGGATTTGAACACAAGA
ACCATGACTCCCAGATAGTCATTGCACAACCCACTTCGTTACCACCAGTC
ACCAGAGCATTTGAAATGTCAGTTATAGTTACCAATCAATTTGTTAAAAA
GATAGCCACTGGGAATTATGAATGCCGTAACAGAACACATACTACACCCT
GGGGGTGCGAGATCACTAGAGGGGTGCGAAATCGCTAGGGATTTCGCACC
GGGGGGTGCAAATTCACTAGTGATTTCGAACCGGGGGGTTCAAATTCACG
GGGGGTGCGAGATCCCTGTGACACCGGCAAGGGAGTTGTGTAGCCATGGG
AGTTGTGAAGCCGAGGGACGACCGCCGAAACGGTCCCCGTTGTATTGAAA
GGCTCTCGAAATACTGACTGTCCTATATTCGATATATAATTCTCGTGACT
TGGGAGACAATATTCCGTCTCATATAAGTTAGAAACCGAGGTAACATACA
TGTCATATAAACTAATGAAATTGTTGAAACGTTTATACAATTTCACAAGA
TCATAGAAGTGATTTTGAAATGTGCTTGGTTTGTTTCGTTGTAGTGAACG
ACTTGTTAAAGTCATGGAAAGACTTGGAAACCCTGAAAAATATTGCCAGC
GGTGACAAGGCACTGTACAATGGTAAGTTGGAATAAAACTTACAAAACCG
ACCTAGCGGCCAGTACTTGTTATTTTTTCATATTTTCAATTGATCTAAGT
AGAATAGAAAAAATAAAGTTTTAATTCATTCCTATTCGAAATGTTTGGTA
AATTTATAGTAGATTCTTCGGCATTTCTTTAATCGAAGACATTCTCATCT
ACCTGCTGGACAACACAAACATCAGGTCTTAACAATGTATTAATCAAATG
GATATTTTATTGTTTTGTGTGTATTGCAGTAGGTTCAATATGCGCCAGAT
TGTGATGTTGTGTGGTGTATTGTATCTACCACAGATGCTGCGTTCCAGAA
AGAAGCAGAGGAGACTTTAGACAGGATCAGACGTGTAGTGACGAACATGA
CTCCTGACGAGCGACAGAACAGTAAGTCCTGCGCCATCTTCATTTCCTCA
ATGTTTATTCATAATTACACACATTAAATACGTCTGAAATTATCCAGATT
CGGCGTGGTGGCTCTTACTTTGGAGGCAGACATTGCGTTTTTCTCTGGTT
ATTAGATATCAAATAGATAGAATATAGTTTTTTCGTACATCACTTTCACG
GCATGAATTGTAACTAAAAACTCGCCCACCCAACCCCTGCACCAAGATAA
TTATCCGCCATCTTGTGATTGCATCACATGAAAGTTCCGCCGTCTTTTCG
GACATTTGAAAAGAACAGTCCATTCTTCTGCGGTAATTATAAATGTGGAG
CAGGCTTCGCCTCCAGCTTATGCACGATTACAGTGTGTTTAGCAAACAAT
GGTTTACACGCCTCTGTAGACAGAAAAATTCCTGTCCAACAGGATTCTTT
TATCATGACTTCGCTCGAATGCTTAAAATAATACATAATTTTATACGTCA
CTGCCCTCTGTGAAACTGTTTCAACATCTGTGGCTGGGAAAAGTGCAATA
TGACTCAGTAGAATTCAGTTGCTATTAGTATTGCAAACGGTTATCTTTTT
CTTTATCTTACAGTGCGGCTGAGCGTAGCCAAGCACATCGGACCACAAGG
AGCTCAGAAGATCTTGGCCTTCTCTAAGATGTTAAAACGTTTGAAATCAG
ATTTCTTAACGCAAATGTCGTCACTTTGATGTATTTGCTCTTGCGTTATA
CTTTTTAGCACCTTTTGGTACTTCAGATGTAGGAAAACTCGTTACGTTGG
GTTGTAGCATATATATATATATATATATATATATATACGATACTGTTGTG
GTACATTTGTGACGTGGTAGCTTCAGTGAACAGTAAGCAGATATTTAAGC
CAACTTTCCGAGGTACGTAAAGACTTAATAAAAGATAAGGGCAACGTAAA
ACTGTTTCTTTATTTATTTGTATACATTCTCCTTCTTGTATCATCGTGAC
CATATTTGTCCATGTATGTTGAAATCATGTGATTAATGTATTGTGTACGG
TCAGTATGTGCCTGTTGAATTCGGTGGTATATGCATATCCGTCAGTTATG
AAGAGGCATGCGCATTACCTGTTTTTGCTACATCTGTATGCCACTATGTG
TATTCATGTGGAATAAAACGTTTCTGCTGCTGCATACGTTTAATCAGGCT
TTTTTTTACTATTAGTAAGACAACTAATTCCCTGTGTCCTCAATAGTAAT
CACCAACTTACAAAGTATGGGAAGATCTAGAAATCACAAATCCCCAACTG
GCTTAGCCTGGAGACCATCCTTTTCAACTTTGGTTCGCTCCCAACAGTCG
CTACAGGCTGGGCTGCAGGCTACTACTGGCTATGCTGTTATGTTCTTACA
AAACATATAACAACATACAGCGTACATCAAATCTGGGACACACATTAGAT
TTCAGAGTGACTATATGATGTTGGTCTACTTTGGGTTGGGGGCGGGACTT
GTCTCTCAAAGAGAGACGTCTCTCAAAGAGGGACAAGTCCGAAAAATTGA
CGATGCTTAATCTACACTTGTTTCGCTAGCTTTTAAGGAAAGCGATCTCA
CTTTGACCATTCATTACTGACTTTTTTTCTGGCTGGACAATGCCTGTCTC
CATTCAGAATGTCTAAACCGATGGTTTGACCTTTTCTATTCGAGAACACA
AGGTGGTCTGATTGACATCGAATGTATTTCATACAGCCAAACTGTAAACA
ACTCTGTCCGCGGGCGAAGAATGGCATTTTACTGACCCGGTGACTCCATT
ATCTCAAAAAGCACAATTTGAAAAAAAACAATTATTTCTGTCCAACAGTA
TTTCTGTCAAGAAACTAACGTTCCAGATCATTTATCTGAAAACAGGTGTG
CGCTAATGTTGAATTTAAAGAATACACTGACAGAGATAATTGCGTGGTTA
CTGACCAAGATCTTATCGTGTGAGAAAGCTGCTGACTGACTGACTGACTG
ACTGACTGACTGACTGACTGACTGACTGACTGACTGAAAGCGACAAACAA
TAAGGTCGGGAACATTTGGCTTATATTCGCTGAAGGTTATAATTATAATT
TATTACAATCAGGTTGTGTAACTTTACAGTGCATCAAGCATCAACACGGA
CATGCATGTGTAGGTAAACTATGCACTACCTGCATTCATCAACTGTGTCA
GCATGCGAATTTAGATTTGGAGGACCTGCCCAGTACGATATGGAGGATAG
GGACGGATGGAGAAGAAGGGCCATGAGCACCTGTGGTATCATCACGACCA
GATGATGATGATGAAGCATCGGTGTTAAAAGCGGTCAAAGAAATTACATC
GACATGCCAACTGACATTTCTATGGATTTCGCTAGATGTCGCTGCATACA
CGCAAGCCACCTTCAATACCGACTACTGCAATTCGTCATCGCCGTCATCG
TCCGAACTATCAGACATGTCTGCCCAATGCACTCCGGACGGAGGTAGATC
TTTCGTGAGAAAGGTCTGTACTTTTTGCTTAATAACCTCTTGTACATTCC
ACCATTTTCTACTCTTCAGCAATCTGGTGCTAATCTCTTCCCGTACCGGC
CAAGTCCTGTCCACAGCCGACTGCTGGGACATCTGCACAGTCCTCAGAAC
TTGGAATGACCGACAACGTCTTGTGTTCTGCTGCATGTTCTTCGTAAGAC
AGCGAGACATCGTCAGAGATCCTGGGGTGCGGTGTCCAGCTCTATCTAAC
GGCATGGTGTTACTTCTGGACCGTTGTCTGAAACTGTTCTCGCCTTCCAC
TGACGTCCTAATCAGTGGAACACACGTTCTGGCCCTTCTACGGTTGCCCT
GTGAGAGGTCAATGCTTTCTCTGCTATGTGTAGCGTCGTCTAGGTGTGTC
TGAACTCGGACAAGCCATCCGTTTTTTATGCTACTGCACCTTCGCCTATC
TGATGCATCCGAGTGCTGGTTCTCCATCATCCCTCCGCCCAAAGCATGAT
GGGTATGTCTGCCATTATTCTTCTGCAACGTCCTCTCAGTGGCAATAGGT
GTGCTTTGATATCGTGATAATGTTTCTGTACCATTACCACTAGATTTAGT
TTGTGTCCATGCCATACTGGGTCTCGTGGTTTGTGGCAAATCACTGTTGT
CTTTACCTCCGTGGGGAGGTACACCTTCATCATCAACATGGCGCGGAGGT
CCCGGATGCAGGCCACTCCTAGACAAGCTGAGTGGAGGAGGCATCCGTCT
CAGTAGCTGACGGACTTTGTTTGTCTCATGAGTCAAGACATTGAAGCGTA
TTTGCTGCTCTCGTCTTAGATGACCCAGCCTGGTCTTGAGGAGTCTGTCT
TCTATGTGGTTCTTGATGCCGGCCCGGGAGTCGAAGTCGAACGACTCGTC
CCTCTGCATGCCACGTGACCCCGGTTTCCTTGGCAACATAGCTACACCTA
ATGCCGATAGAACACAGGTTAGTGCGATTCGGTAAAACATGTAGCAACGA
AACAAACA Coding sequence (CDS) from alignment at Sc0000332:251561..257118+ >transcript:BL96039_evm1 ID=transcript:BL96039_evm1|Name=transcript:BL96039_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=3312bp|location=Sequence derived from alignment at Sc0000332:251561..257118+ (Branchiostoma lanceolatum)
ATGAATAAGGCAGCTTATCTGTTGCTTCTGACTCTTCTAGTGGCGTTTGT
GCAAGCGGGGGAGGTGAACGACTTGTTAAAGTCATGGAAAGACTTGGAAA
CCCTGAAAAATATTGCCAGCGGTGACAAGGCACTGTACAATGATGCTGCG
TTCCAGAAAGAAGCAGAGGAGACTTTAGACAGGATCAGACGTGTAGTGAC
GAACATGACTCCTGACGAGCGACAGAACATGCGGCTGAGCGTAGCCAAGC
ACATCGGACCACAAGGAGCTCAGAAGATCTTGGCCTTCTCTAAGATCAAT
CTGGTGCTAATCTCTTCCCGTACCGGCCAAGTCCTGTCCACAGCCGACTG
CTGGGACATCTGCACAGTCCTCAGAACTTGGAATGACCGACAACGTCTTG
TGTTCTGCTGCATGTTCTTCGTAAGACAGCGAGACATCGTCAGAGATCCT
GGGATGACCCAGCCTGGTCTTGAGGAGTCTGTCTTCTATGTGGTTCTTGA
TGCCGGCCCGGGAGTCGAAGTCGAACGACTCGTCCCTCTGCATGCCACGT
GAATGAATAAGGCAGCTTATCTGTTGCTTCTGACTCTTCTAGTGGCGTTT
GTGCAAGCGGGGGAGGTGAACGACTTGTTAAAGTCATGGAAAGACTTGGA
AACCCTGAAAAATATTGCCAGCGGTGACAAGGCACTGTACAATGATGCTG
CGTTCCAGAAAGAAGCAGAGGAGACTTTAGACAGGATCAGACGTGTAGTG
ACGAACATGACTCCTGACGAGCGACAGAACATGCGGCTGAGCGTAGCCAA
GCACATCGGACCACAAGGAGCTCAGAAGATCTTGGCCTTCTCTAAGATCA
ATCTGGTGCTAATCTCTTCCCGTACCGGCCAAGTCCTGTCCACAGCCGAC
TGCTGGGACATCTGCACAGTCCTCAGAACTTGGAATGACCGACAACGTCT
TGTGTTCTGCTGCATGTTCTTCGTAAGACAGCGAGACATCGTCAGAGATC
CTGGGATGACCCAGCCTGGTCTTGAGGAGTCTGTCTTCTATGTGGTTCTT
GATGCCGGCCCGGGAGTCGAAGTCGAACGACTCGTCCCTCTGCATGCCAC
GTGAATGAATAAGGCAGCTTATCTGTTGCTTCTGACTCTTCTAGTGGCGT
TTGTGCAAGCGGGGGAGGTGAACGACTTGTTAAAGTCATGGAAAGACTTG
GAAACCCTGAAAAATATTGCCAGCGGTGACAAGGCACTGTACAATGATGC
TGCGTTCCAGAAAGAAGCAGAGGAGACTTTAGACAGGATCAGACGTGTAG
TGACGAACATGACTCCTGACGAGCGACAGAACATGCGGCTGAGCGTAGCC
AAGCACATCGGACCACAAGGAGCTCAGAAGATCTTGGCCTTCTCTAAGAT
CAATCTGGTGCTAATCTCTTCCCGTACCGGCCAAGTCCTGTCCACAGCCG
ACTGCTGGGACATCTGCACAGTCCTCAGAACTTGGAATGACCGACAACGT
CTTGTGTTCTGCTGCATGTTCTTCGTAAGACAGCGAGACATCGTCAGAGA
TCCTGGGATGACCCAGCCTGGTCTTGAGGAGTCTGTCTTCTATGTGGTTC
TTGATGCCGGCCCGGGAGTCGAAGTCGAACGACTCGTCCCTCTGCATGCC
ACGTGAATGAATAAGGCAGCTTATCTGTTGCTTCTGACTCTTCTAGTGGC
GTTTGTGCAAGCGGGGGAGGTGAACGACTTGTTAAAGTCATGGAAAGACT
TGGAAACCCTGAAAAATATTGCCAGCGGTGACAAGGCACTGTACAATGAT
GCTGCGTTCCAGAAAGAAGCAGAGGAGACTTTAGACAGGATCAGACGTGT
AGTGACGAACATGACTCCTGACGAGCGACAGAACATGCGGCTGAGCGTAG
CCAAGCACATCGGACCACAAGGAGCTCAGAAGATCTTGGCCTTCTCTAAG
ATCAATCTGGTGCTAATCTCTTCCCGTACCGGCCAAGTCCTGTCCACAGC
CGACTGCTGGGACATCTGCACAGTCCTCAGAACTTGGAATGACCGACAAC
GTCTTGTGTTCTGCTGCATGTTCTTCGTAAGACAGCGAGACATCGTCAGA
GATCCTGGGATGACCCAGCCTGGTCTTGAGGAGTCTGTCTTCTATGTGGT
TCTTGATGCCGGCCCGGGAGTCGAAGTCGAACGACTCGTCCCTCTGCATG
CCACGTGAATGAATAAGGCAGCTTATCTGTTGCTTCTGACTCTTCTAGTG
GCGTTTGTGCAAGCGGGGGAGGTGAACGACTTGTTAAAGTCATGGAAAGA
CTTGGAAACCCTGAAAAATATTGCCAGCGGTGACAAGGCACTGTACAATG
ATGCTGCGTTCCAGAAAGAAGCAGAGGAGACTTTAGACAGGATCAGACGT
GTAGTGACGAACATGACTCCTGACGAGCGACAGAACATGCGGCTGAGCGT
AGCCAAGCACATCGGACCACAAGGAGCTCAGAAGATCTTGGCCTTCTCTA
AGATCAATCTGGTGCTAATCTCTTCCCGTACCGGCCAAGTCCTGTCCACA
GCCGACTGCTGGGACATCTGCACAGTCCTCAGAACTTGGAATGACCGACA
ACGTCTTGTGTTCTGCTGCATGTTCTTCGTAAGACAGCGAGACATCGTCA
GAGATCCTGGGATGACCCAGCCTGGTCTTGAGGAGTCTGTCTTCTATGTG
GTTCTTGATGCCGGCCCGGGAGTCGAAGTCGAACGACTCGTCCCTCTGCA
TGCCACGTGAATGAATAAGGCAGCTTATCTGTTGCTTCTGACTCTTCTAG
TGGCGTTTGTGCAAGCGGGGGAGGTGAACGACTTGTTAAAGTCATGGAAA
GACTTGGAAACCCTGAAAAATATTGCCAGCGGTGACAAGGCACTGTACAA
TGATGCTGCGTTCCAGAAAGAAGCAGAGGAGACTTTAGACAGGATCAGAC
GTGTAGTGACGAACATGACTCCTGACGAGCGACAGAACATGCGGCTGAGC
GTAGCCAAGCACATCGGACCACAAGGAGCTCAGAAGATCTTGGCCTTCTC
TAAGATCAATCTGGTGCTAATCTCTTCCCGTACCGGCCAAGTCCTGTCCA
CAGCCGACTGCTGGGACATCTGCACAGTCCTCAGAACTTGGAATGACCGA
CAACGTCTTGTGTTCTGCTGCATGTTCTTCGTAAGACAGCGAGACATCGT
CAGAGATCCTGGGATGACCCAGCCTGGTCTTGAGGAGTCTGTCTTCTATG
TGGTTCTTGATGCCGGCCCGGGAGTCGAAGTCGAACGACTCGTCCCTCTG
CATGCCACGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000332 | genome | Sc0000332:251561..257118 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96039_evm1 |
| Biotype | protein_coding |
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