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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96035_evm1 >transcript:BL96035_evm1-protein ID=transcript:BL96035_evm1-protein|Name=transcript:BL96035_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=343bp
MSVLQQDNTELCLQLSGKSQQPQKVYKLKSKVEDMPFYKPSKCKKKVRKL
YACGLCPVSTNISEQLYKHVAEEHGGPCYSEQRYMCGVCEQRFVYMGPMK
VHMRSHTNERPFKCPQCAYAGKTQSALSNHVRMHTGEKPWTCEHCGRDFT
RLDSMKRHISAHHTGHRPFKCNMCSYASVTQNSLKLHILAKHKKEKPYKC
SQCDFSTCYKTDLSVHERSHTGVKPYMCPHCTYASSNSSDLVKHVRRHTG
DRLFKCRHCDYTSTEKHTVEVHERGSHTNLRPFKCPDCPYRTAYQSHLPR
HIQTQILRTKKHPSLLRATHPQQRKKAWTHTPACGFQQGFPAL Run BLAST on NCBI mRNA from alignment at Sc0000329:192278..195463+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96035_evm1 ID=transcript:BL96035_evm1|Name=transcript:BL96035_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=3186bp|location=Sequence derived from alignment at Sc0000329:192278..195463+ (Branchiostoma lanceolatum)
ATGTCTGTCCTCCAACAAGACAACACCGAGCTGTGCCTTCAGCTATCCGG
CAAGTCACAACAGCCACAGAAGGTCTACAAGCTGAAGAGCAAAGTGGAAG
ACATGCCGTTCTACAAACCATCGAAATGTAAGAAGAAAGTGCGTAAGCTG
TACGCCTGTGGTCTCTGCCCCGTTAGTACTAACATCTCTGAGCAGCTGTA
TAAACATGTTGCGGAAGAGCATGGCGGCCCGTGCTATTCTGAGCAGCGCT
ACATGTGCGGGGTCTGCGAGCAGAGGTTTGTCTACATGGGCCCCATGAAA
GTCCACATGCGGAGTCACACCAACGAACGACCCTTCAAGTGTCCACAATG
TGCTTATGCTGGGTGAGTACTATTTATGTATTTGTAGCCTGTGTAAGATG
AGAGTATAGTTTAGAAGATGCAGTAATTGTCTTCTAAGTTCATTATTGAT
TTGTGTAGATGTTCAGTTTGGTTCGTTGTAAACACACAAAAAACATCAAC
AGGAAGCTAGACATTATTTTGTATCCTTCCTTTCAGTACAAATTCAATGG
AGTAGTAGTTCAGACACCTCAAGCTCTGCACCTGATTTTATTGTCACATC
CAATATCAAAGACTTATTTGACTGTCAGTCACCCATGCCTTTGTCAGCAT
GAATGACTATTGGCATTAGACTCAAAGAATTGGAAGTTTGTGGTCAAATG
TTTGTTGGCAGGGTGTGTTGATGGCTTCTGTTTATATAAATGATTATTGT
GGTGAACAGTAAGTTTGATTTGTATTCCCACAGTAAAACCCAGTCAGCCC
TCTCCAACCATGTGAGGATGCACACTGGTGAGAAACCCTGGACCTGTGAG
CACTGTGGTCGTGACTTCACCCGGCTGGACAGTATGAAGCGCCACATCAG
TGCACATCACACGGGGCACAGGCCATTCAAGTAAGCTAGCCGCCTCCGTG
GAAAATGTTCTATGAATAGCATAATGCAGAGATGCAAGAAATGTTAACCT
TCTGCCTACTAAGGTAGCCATTAAGTACTAATGGTTATGGGGTCAGGCAG
CAGGGAGTGTAAGGGCACACTTATACATGGGTAGATGCCATAAAAAATTG
CATAATAACTGATTTAAGTCTCATTTTGAGGGTCATAGGGAAAGTTGCTT
CTTGTAACTTTCATGTGATTATTTTGTGTGTTATTGGGATAACCTGAAGA
GTAAAAAAAAAATTATGAACTGATTTTCGTCTCCCTTTTGCCTAGGTGCA
ACATGTGTTCATATGCAAGTGTGACACAGAACTCACTGAAACTACACATC
CTTGCTAAACACAAGAAGGAGAAGCCCTACAAGTGTTCCCAGTGTGATTT
TTCCACATGCTACAAGACAGATCTGTCTGTGCATGAGCGGTCCCACACTG
GTGTCAAACCCTACATGTGTCCCCACTGCACCTATGCCAGCTCTAACAGC
AGTGACCTGGTCAAACATGTGCGCAGACACACTGGGGATAGGCTCTTCAA
GTGCAGGTATTTCTTGGGGTTTTGACGTTTCTGAAATTGGCTCAAATCTA
CTCTGCAATTTTTCTAACATTTGATATATAAACACCCTGTAAGAGCTGTG
CAGGCAATGTACTGAAAGCTATGGGAAGTTCTAAATGTAGATAGCATTTA
CCTGGTCAACTGGAAACTAGTCTTAGTGGTACAGTAGATTCCAATTATTT
GTATACCTTTTTTCTGTATATTTCGTATTTCTGTATAGAATTCCAAAACA
CCAAACCATTTACCATCCACTCAATGGTAAAAGCAATGTATAACTGTATC
GTCCATAATCGTAAAGTTCGGTGTATTGTATAGAATCTTGTCCGATTTTA
TCGTAAAATGACCCGAAACAATAGGCTAAATTTTTGGTCCCCTGTATTGT
AGTTTCGGGAGCGGGGACGCCGTCTACCGTTCGACAATCGCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTCCACAGACATTGTGACTACACCTCGACA
GAGAAGCATACAGTTGAGGTCCATGAGAGAGGCAGTCACACCAACCTCCG
ACCCTTCAAGTGTCCAGACTGCCCCTACCGCACCGCGTACCAGAGCCACC
TGCCTCGCCACATCCAAGTAAGTTTCACAAAGCCTACATGCCTGTCACCT
GACCAGTTCCAGTTGAAAAATGTATGTGTCTGTTCTATCGTTATTTTTGC
AAGTCTTCCTAGAAGCACGAAAGCCCACTTGTGTTAGTCTATAAAACGGA
AAAGTAAAGACTAAAGGTGTTTCTAACAAAAGAAGTTGAGTCACCAAATT
TTTTACCAGACCTAAAATGTCTTAAAGTTTTCCATCACAATTCTTCTGTG
ATGGCCTTCAAAGTTTCATGTAGTTGTTGCTGTTCTTTCTGTGCCTGGTA
CAGTGTTTCTTACAATGTTGGTTCCTTGTAACATTATTTTTCTTGTTGCA
GCGTATCCATGTTGAAGGCAGGAGGGCACATACCCGCTCTCGCAAATCTA
TGAAATCTCACAGCCAAGAAACCATACTCGCCTTACAGAAGCTCAAAAGA
CTGAACTCAACTGATGGAGACTCAACATTTAATTCCAGTTCTTCAATAGG
TAAGTAATTAGTTTACCTATGCTTGGAACCAATGCATCAAAATTGCTCAG
GATTCCAGTATACAAGATAGCAGATATTCTTACTGTTCAAGATACTTCAC
TTCAACACAAGCAAAAGTTGCTCACCTTGAATTTTCAGTCGCTCTTATGT
CGACCTTCTTTCACTTGTGTTGAAGTGAAGTATCAAACTTTATCATGGAA
TGTACCAACACAGATGAGCTTTCATGCTTAACATTACTCTTTTACATTTA
TTCTTTTCTGTAGACACAGATACTGAGGACCAAAAAACACCCATCTCTCC
TGAGAGCAACACATCCTCAACAGAGGAAAAAAGCATGGACCCACACCCCA
GCTTGTGGGTTCCAGCAGGGTTTCCCTGCCCTGTGA Coding sequence (CDS) from alignment at Sc0000329:192278..195463+ >transcript:BL96035_evm1 ID=transcript:BL96035_evm1|Name=transcript:BL96035_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=5160bp|location=Sequence derived from alignment at Sc0000329:192278..195463+ (Branchiostoma lanceolatum)
ATGTCTGTCCTCCAACAAGACAACACCGAGCTGTGCCTTCAGCTATCCGG
CAAGTCACAACAGCCACAGAAGGTCTACAAGCTGAAGAGCAAAGTGGAAG
ACATGCCGTTCTACAAACCATCGAAATGTAAGAAGAAAGTGCGTAAGCTG
TACGCCTGTGGTCTCTGCCCCGTTAGTACTAACATCTCTGAGCAGCTGTA
TAAACATGTTGCGGAAGAGCATGGCGGCCCGTGCTATTCTGAGCAGCGCT
ACATGTGCGGGGTCTGCGAGCAGAGGTTTGTCTACATGGGCCCCATGAAA
GTCCACATGCGGAGTCACACCAACGAACGACCCTTCAAGTGTCCACAATG
TGCTTATGCTGGTAAAACCCAGTCAGCCCTCTCCAACCATGTGAGGATGC
ACACTGGTGAGAAACCCTGGACCTGTGAGCACTGTGGTCGTGACTTCACC
CGGCTGGACAGTATGAAGCGCCACATCAGTGCACATCACACGGGGCACAG
GCCATTCAAGTGCAACATGTGTTCATATGCAAGTGTGACACAGAACTCAC
TGAAACTACACATCCTTGCTAAACACAAGAAGGAGAAGCCCTACAAGTGT
TCCCAGTGTGATTTTTCCACATGCTACAAGACAGATCTGTCTGTGCATGA
GCGGTCCCACACTGGTGTCAAACCCTACATGTGTCCCCACTGCACCTATG
CCAGCTCTAACAGCAGTGACCTGGTCAAACATGTGCGCAGACACACTGGG
GATAGGCTCTTCAAGTGCAGACATTGTGACTACACCTCGACAGAGAAGCA
TACAGTTGAGGTCCATGAGAGAGGCAGTCACACCAACCTCCGACCCTTCA
AGTGTCCAGACTGCCCCTACCGCACCGCGTACCAGAGCCACCTGCCTCGC
CACATCCAAACACAGATACTGAGGACCAAAAAACACCCATCTCTCCTGAG
AGCAACACATCCTCAACAGAGGAAAAAAGCATGGACCCACACCCCAGCTT
GTGGGTTCCAGCAGGGTTTCCCTGCCCTGTGAATGTCTGTCCTCCAACAA
GACAACACCGAGCTGTGCCTTCAGCTATCCGGCAAGTCACAACAGCCACA
GAAGGTCTACAAGCTGAAGAGCAAAGTGGAAGACATGCCGTTCTACAAAC
CATCGAAATGTAAGAAGAAAGTGCGTAAGCTGTACGCCTGTGGTCTCTGC
CCCGTTAGTACTAACATCTCTGAGCAGCTGTATAAACATGTTGCGGAAGA
GCATGGCGGCCCGTGCTATTCTGAGCAGCGCTACATGTGCGGGGTCTGCG
AGCAGAGGTTTGTCTACATGGGCCCCATGAAAGTCCACATGCGGAGTCAC
ACCAACGAACGACCCTTCAAGTGTCCACAATGTGCTTATGCTGGTAAAAC
CCAGTCAGCCCTCTCCAACCATGTGAGGATGCACACTGGTGAGAAACCCT
GGACCTGTGAGCACTGTGGTCGTGACTTCACCCGGCTGGACAGTATGAAG
CGCCACATCAGTGCACATCACACGGGGCACAGGCCATTCAAGTGCAACAT
GTGTTCATATGCAAGTGTGACACAGAACTCACTGAAACTACACATCCTTG
CTAAACACAAGAAGGAGAAGCCCTACAAGTGTTCCCAGTGTGATTTTTCC
ACATGCTACAAGACAGATCTGTCTGTGCATGAGCGGTCCCACACTGGTGT
CAAACCCTACATGTGTCCCCACTGCACCTATGCCAGCTCTAACAGCAGTG
ACCTGGTCAAACATGTGCGCAGACACACTGGGGATAGGCTCTTCAAGTGC
AGACATTGTGACTACACCTCGACAGAGAAGCATACAGTTGAGGTCCATGA
GAGAGGCAGTCACACCAACCTCCGACCCTTCAAGTGTCCAGACTGCCCCT
ACCGCACCGCGTACCAGAGCCACCTGCCTCGCCACATCCAAACACAGATA
CTGAGGACCAAAAAACACCCATCTCTCCTGAGAGCAACACATCCTCAACA
GAGGAAAAAAGCATGGACCCACACCCCAGCTTGTGGGTTCCAGCAGGGTT
TCCCTGCCCTGTGAATGTCTGTCCTCCAACAAGACAACACCGAGCTGTGC
CTTCAGCTATCCGGCAAGTCACAACAGCCACAGAAGGTCTACAAGCTGAA
GAGCAAAGTGGAAGACATGCCGTTCTACAAACCATCGAAATGTAAGAAGA
AAGTGCGTAAGCTGTACGCCTGTGGTCTCTGCCCCGTTAGTACTAACATC
TCTGAGCAGCTGTATAAACATGTTGCGGAAGAGCATGGCGGCCCGTGCTA
TTCTGAGCAGCGCTACATGTGCGGGGTCTGCGAGCAGAGGTTTGTCTACA
TGGGCCCCATGAAAGTCCACATGCGGAGTCACACCAACGAACGACCCTTC
AAGTGTCCACAATGTGCTTATGCTGGTAAAACCCAGTCAGCCCTCTCCAA
CCATGTGAGGATGCACACTGGTGAGAAACCCTGGACCTGTGAGCACTGTG
GTCGTGACTTCACCCGGCTGGACAGTATGAAGCGCCACATCAGTGCACAT
CACACGGGGCACAGGCCATTCAAGTGCAACATGTGTTCATATGCAAGTGT
GACACAGAACTCACTGAAACTACACATCCTTGCTAAACACAAGAAGGAGA
AGCCCTACAAGTGTTCCCAGTGTGATTTTTCCACATGCTACAAGACAGAT
CTGTCTGTGCATGAGCGGTCCCACACTGGTGTCAAACCCTACATGTGTCC
CCACTGCACCTATGCCAGCTCTAACAGCAGTGACCTGGTCAAACATGTGC
GCAGACACACTGGGGATAGGCTCTTCAAGTGCAGACATTGTGACTACACC
TCGACAGAGAAGCATACAGTTGAGGTCCATGAGAGAGGCAGTCACACCAA
CCTCCGACCCTTCAAGTGTCCAGACTGCCCCTACCGCACCGCGTACCAGA
GCCACCTGCCTCGCCACATCCAAACACAGATACTGAGGACCAAAAAACAC
CCATCTCTCCTGAGAGCAACACATCCTCAACAGAGGAAAAAAGCATGGAC
CCACACCCCAGCTTGTGGGTTCCAGCAGGGTTTCCCTGCCCTGTGAATGT
CTGTCCTCCAACAAGACAACACCGAGCTGTGCCTTCAGCTATCCGGCAAG
TCACAACAGCCACAGAAGGTCTACAAGCTGAAGAGCAAAGTGGAAGACAT
GCCGTTCTACAAACCATCGAAATGTAAGAAGAAAGTGCGTAAGCTGTACG
CCTGTGGTCTCTGCCCCGTTAGTACTAACATCTCTGAGCAGCTGTATAAA
CATGTTGCGGAAGAGCATGGCGGCCCGTGCTATTCTGAGCAGCGCTACAT
GTGCGGGGTCTGCGAGCAGAGGTTTGTCTACATGGGCCCCATGAAAGTCC
ACATGCGGAGTCACACCAACGAACGACCCTTCAAGTGTCCACAATGTGCT
TATGCTGGTAAAACCCAGTCAGCCCTCTCCAACCATGTGAGGATGCACAC
TGGTGAGAAACCCTGGACCTGTGAGCACTGTGGTCGTGACTTCACCCGGC
TGGACAGTATGAAGCGCCACATCAGTGCACATCACACGGGGCACAGGCCA
TTCAAGTGCAACATGTGTTCATATGCAAGTGTGACACAGAACTCACTGAA
ACTACACATCCTTGCTAAACACAAGAAGGAGAAGCCCTACAAGTGTTCCC
AGTGTGATTTTTCCACATGCTACAAGACAGATCTGTCTGTGCATGAGCGG
TCCCACACTGGTGTCAAACCCTACATGTGTCCCCACTGCACCTATGCCAG
CTCTAACAGCAGTGACCTGGTCAAACATGTGCGCAGACACACTGGGGATA
GGCTCTTCAAGTGCAGACATTGTGACTACACCTCGACAGAGAAGCATACA
GTTGAGGTCCATGAGAGAGGCAGTCACACCAACCTCCGACCCTTCAAGTG
TCCAGACTGCCCCTACCGCACCGCGTACCAGAGCCACCTGCCTCGCCACA
TCCAAACACAGATACTGAGGACCAAAAAACACCCATCTCTCCTGAGAGCA
ACACATCCTCAACAGAGGAAAAAAGCATGGACCCACACCCCAGCTTGTGG
GTTCCAGCAGGGTTTCCCTGCCCTGTGAATGTCTGTCCTCCAACAAGACA
ACACCGAGCTGTGCCTTCAGCTATCCGGCAAGTCACAACAGCCACAGAAG
GTCTACAAGCTGAAGAGCAAAGTGGAAGACATGCCGTTCTACAAACCATC
GAAATGTAAGAAGAAAGTGCGTAAGCTGTACGCCTGTGGTCTCTGCCCCG
TTAGTACTAACATCTCTGAGCAGCTGTATAAACATGTTGCGGAAGAGCAT
GGCGGCCCGTGCTATTCTGAGCAGCGCTACATGTGCGGGGTCTGCGAGCA
GAGGTTTGTCTACATGGGCCCCATGAAAGTCCACATGCGGAGTCACACCA
ACGAACGACCCTTCAAGTGTCCACAATGTGCTTATGCTGGTAAAACCCAG
TCAGCCCTCTCCAACCATGTGAGGATGCACACTGGTGAGAAACCCTGGAC
CTGTGAGCACTGTGGTCGTGACTTCACCCGGCTGGACAGTATGAAGCGCC
ACATCAGTGCACATCACACGGGGCACAGGCCATTCAAGTGCAACATGTGT
TCATATGCAAGTGTGACACAGAACTCACTGAAACTACACATCCTTGCTAA
ACACAAGAAGGAGAAGCCCTACAAGTGTTCCCAGTGTGATTTTTCCACAT
GCTACAAGACAGATCTGTCTGTGCATGAGCGGTCCCACACTGGTGTCAAA
CCCTACATGTGTCCCCACTGCACCTATGCCAGCTCTAACAGCAGTGACCT
GGTCAAACATGTGCGCAGACACACTGGGGATAGGCTCTTCAAGTGCAGAC
ATTGTGACTACACCTCGACAGAGAAGCATACAGTTGAGGTCCATGAGAGA
GGCAGTCACACCAACCTCCGACCCTTCAAGTGTCCAGACTGCCCCTACCG
CACCGCGTACCAGAGCCACCTGCCTCGCCACATCCAAACACAGATACTGA
GGACCAAAAAACACCCATCTCTCCTGAGAGCAACACATCCTCAACAGAGG
AAAAAAGCATGGACCCACACCCCAGCTTGTGGGTTCCAGCAGGGTTTCCC
TGCCCTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000329 | genome | Sc0000329:192278..195463 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96035_evm1 |
| Biotype | protein_coding |
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