|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96025_evm0 >transcript:BL96025_evm0-protein ID=transcript:BL96025_evm0-protein|Name=transcript:BL96025_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=251bp
MTMVIMLYKLRLWTGLQRLSGGMIKLFPYVRAQTSESAMTKEQRVLQYVQ
QNASRGDPDSVLAAVDKFGWETEWAMNVGDVKGQILDRFVKETAPQTMLE
LGTYMGYSAIRTVRLLPETAKFMTVEFDQENAAVAREMIAFAGLQNRIVQ
ITSDTADVIPQLKTKYDVETLDMVFIDHWKDVYLRDIKLLETNKLLRKGT
VVVADNIIYPGAPDYADYVRTCGKYDSTFHESLLEYSKDEIDGLEKSVFR
G Run BLAST on NCBI mRNA from alignment at Sc0000308:97987..103934- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96025_evm0 ID=transcript:BL96025_evm0|Name=transcript:BL96025_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=5948bp|location=Sequence derived from alignment at Sc0000308:97987..103934- (Branchiostoma lanceolatum)
ATGACGATGGTTATAATGCTTTATAAGCTGCGTCTGTGGACAGGACTGCA
AAGACTGTCAGGTGGTATGATCAAGCTATTCCCGTATGTGAGAGCGCAGA
CGTCAGAAAGTGGTAAGGCATTAATACTGATAGGACGATCTCATGTTTTC
GTTACATTACATTATGTTATGGCTAAATTTGTCGTGCCCATCATCATCAT
CATCATCGGTCTTCCTCTTCAGTTTTGCCCATGTCACTCACAAATTATTG
CGTACATCGTCCGTCGTCTTTACAATAGCCATTCATTAGCGGTGGGTGTG
TACATTTTTAGAAATGTAGAATTATCACAATCAACCGGGAAATTATCTAT
TTATGGGGTCAGTGCACAAAAATCAAATGTAGGTCACTGGAAACAGGACG
AGCAACTATTGGACTAGTCACGCTACTAAGTAAGCTTTCTTATTTCATTC
GCGAGTCGGCTGGATCCTGCTTTTGGGGGTTACAGAGAAATTGTGAACCT
GAAAAATCTACGCCAAGAGTAGGAATCATTCAAATTTCGACAGTCGGTAA
TACCTCTATACCGATAACCGACATTGTACATGCCATACATAATAATACAT
AGACTCCTCGATCGATTGCCTGTCTCGTTATGCATGTATTACTGCAAATC
GCTAGGTGGCGCAACACAGACAACAAACAGACAACAAAGGTCAGCGAGTT
CAGGAAACGTTGGGTCCACGTATATCTGTACCTCCTTACGGAAAAGTGAC
GCTGATCTTCTATTTTGTGTTCTGATGGCTTCCGACACCAACGGTAAGGG
GTTAGCTCGTTGGTTAGCTAGTTAGTAAGGTATTCTTGAAAGCATGGAAG
TCCTTTGCAATGAGGGAATATGACCCAGAAAAGCTGGAAAGTGTATGTAT
CAACTCGACCTTTAGACCTTCTGACCACGTAACTGTAGTCTGCTTAGCAG
GTTCTACGAGCCTGCCTTTTTATCTGATGTCACATCAGTACTATTGCACT
CGAATCGTTATTTCCAGCCTTCGAGTGCAACAGAAACCGAGTGATTAGAT
TCATTTATTTGGCTGTAAAATAAGTACAGCCAGGGCTACCCAACTAGCCG
AAAAATGTTACAAAGGACTAATAATGCTAGGGTCACATTTCCGATCCGGG
GCCCGGCCGGGCAGTCTTTGGGAACGAAAAGTATGATATAAAAGACAAAA
GAAACACAAAACGTACCCAAAATTATTTGAGAGCATAGCTTGTGCAAATT
TATTGACACACACTTTGATTTTTCGTTATCGCAAACGGCCCGGCCGGGCC
CCGGTTAGGAAATGTCACCCTAGCATTAGCCCTGGGAGCAATATTCAAAA
TTCAATACAAACTTTCACAAAACACATCAAAATACACATGAAGGCTTACC
CAAAACGCAAGACTGAAATACATAGAGGAAACAAAATTGCAATAGAACTG
ATTTCCCATCAGGAAAAAACAACAGACCGGGCGTATGTACAACTTAATAC
ATCTTAGAAGAGTGAATACCAGATGGATCATTGATAACAACAACCCTCTC
GTTCTGTCTTGACAATCATTTTACCTTCCAGCTATGACTAAAGAACAGCG
CGTCCTGCAGTATGTTCAGCAGAACGCGTCACGTGGGGACCCGGACAGCG
TCCTGGCAGCAGTGGACAAGTTCGGTTGGGAGACGGAGTGGGCCATGAAT
GTAGGGGATGTCAAAGGTAAAATATCATCGTTCGATATGTATTGCACTTG
TGATCTAAGTACTATTGTCCAAAGCCCAGCACTTAGTGGGGTGGGGTAAA
AAAAGCCCGGCAGCCTGATGTGACTAATGATAATAATAATAATCTTTATT
GCATGCCGGGAAAGCATTCTGAACCTTTTAGATCTGTGTTATATTTTAAA
AATCCTTCAAGTAGAAACAGATGTAGAAGAGTTATTCTGCTTCGATTCAT
TAATGTATTTAATTTTTTTTCTCTTGTTAGGTATACACACGGTGTATGTA
ATTATTTTGTTTTGTTTACAATTAGCAATCGGGCATGGATTTGGAAGTTA
TTGATTATCATAAATATAATTATCAAACCTACAGGAGCGATCCTGGACCG
GTTCGTGAAGGAGACGGCGCCCCAGACCATGCTGGAGCTGGGCACGTACA
GTTATTAATTATCGTTATTATAATTATCACACCTACAGGAGCGGTCCTGG
ACCGGTTCGTGAAGGAGACTGCGCCCAGACCATGCTTGAGCTGGGCACGT
ACAGTTAGTTATTAATTATCGTTATTATAATTATCACACCTACAGGAGCG
ATCCTGGACCGGTTCGTGGAGGAGACTGCGCCCAGACCATGCTGGAGCTG
GGCACGTGCAATTATTAATTATCATTATTATAATTATGAACCCTACAGGA
GCGATCCTGGACCGGTTCGTGAAGGAGAAGGTGCCCCAGACCATGCTGGA
GCTGGGCACGTACAATTATTGATTATCATTATTATAATTATCAACCCTAC
AGGACAGATCCTGGACCGGTTCGTGAAGGAGAAGGTGTCCCAGACCATGC
TGGAGCTGGGCACGTACAGTTATTAATTACCTTCGCCGGGAATGTATGCA
TTCGCGGTAAGGTTATGTTATCGGTTACGCCAGCTGTAAAGTGGGTCCGT
ATGTATGTCGAGATCATAAGTCGAGAGAACTTTGACGGATCTTGCTGATT
TTTGGTAGGTAAGTGGCGGTTGTGGGAACGAAGGTCAAGTTCGAAAATGG
TTAACCTGGCGTTTTTTGAAAGTGCTCCAGTGGACTTTTTTGTTAGTGTG
TTTGTATGTAGACAACATAACTCGACGTATTGATGATGGATCTGCATGAT
TTTTGGTGGGTACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGTAAATGATGGGATTTCATTCTTGTGGCGTTTGGGAG
ATAATCAAATGTGGACGTTATCAGACATAAATCATGATGGCCTCATTTAC
ATAATATATGAGGAAATGCTACAATGGCCCTCTTTTCTAAGATTTTACTT
TAATGCTGTGTTTTGTGTAGAGAAAAGGATCACTTGAAATTCATGCAATC
GAGGACCTTATTTACATACTGAGTGATAAGCATTCACTCGAAAAGGCTAA
CATCAGTCGGCGAAGGTATGAGGTCGTGGAACTCTAGTTATCATTATTAT
CAAATCTACAGGAGCGATCCTGGACCGGTTTGTGAAGGAGACTGCGCCCC
AGACCATGCTGGAGCTGGACACGTACAGTTATTAATTATCGTTATCATAA
TTATCACACCTACAGGACAGATCCTGGACCGGTTCGTGAAGGAGACGGCG
CCCCAGACCATGCTGGAGCTGGGCACGTACATGGGCTACTCCGCCATCAG
GACCGTTAGGCTGCTGCCGGAAACAGCCAAGTTCATGACCGTGGAGTTCG
ATCAAGAGAACGCCGCGGTTGCCAGGGAGATGATCGCATTTGCAGGGCTA
CAAAACAGGGTAATTTGTTTCGCATTTCCACTAAAGCCTAGACTCTACCA
GTCTCCCCCGGTCGCTGGGAAAATAGTAGAAATTGGCCAAATAGAGTCAA
ATGTTTGAAGGGAGTCGGCTACGGAGAGAGGGTCAAATTGGCAACCGAGC
CAATTTGACCCTCTCTCCGTAGCTGACTCCCTTCAAACATTTGACTCTAT
TTGGCCAATTTCTACTATTTTCCCAGCGACCGGGGGAGACTGGTAGAGTC
TAACTAAAGCCTGCGCCCGCTGAGCAAATTCGAACAAAAATTTGGCAGCT
CGCTCAACGATTTTCATAGAGGGGGTCTATCCGGTAAAACACTTTTAGCG
TGACACATCAGTTTTCTACAGTAGGTACAAGAGTAGTACTGTAAGGTACT
CACACTGGGATGGACCCCTGCTCTTTATGGTGAGATTGGTGGCTCCCCTC
AAACGCGGGGCCTCCGGCTTTACGTTCCAGCGGTGACGTCACTTACATTC
CATCATTTTCACGTGAGTCGTGTGAGGAACTTGCTGGGCTTTTTCCCAAG
GTACAATATTGGGGCCTGCTTGGGGTTTGAACACAGAACCTTCAGATTTT
GAGTCAAAAACCCATAACCACAGTGCCACCTTGCTATCATTGTACCTTTC
AACTAGTTCATCACATGAATCGTTTATTGTCAGTGTTTTTACTACTTCGC
GTATTCACGAGAGGACGTCCCTTATCAACGCCAAGTTCTCATTTCCACCT
GAGTCAAGTAAGAAAATAGGTGTTAAGGCACAACACTGGGGCCTGCAGGG
GATTTTAAGTCAATGTCTCTAGCCACAAGCCTATGTTGCCACCATTGCAC
CATTCAAGGATATCTGAACACGTTATCACCTCGGCAATTCTTCATTGCCA
GTCTTTTTGATATGTCATGACTTGAAATCATTTTTTCTCAGATTGTCCAG
ATCACATCTGACACCGCTGACGTCATTCCCCAGCTGAAGACGAAGTATGA
CGTAGAAACGCTTGACATGGTGTTTATAGACCACTGGAAGGACGTATACC
TCAGGGATATCAAACTACTTGAGACAAACAAGTTACTACGCAAAGGTAGT
CAGTAGTATAAAACATACCTTACTTGCAGACGTAAATAACAATATTGAGT
CCGATTCATTGTTGTATTGAAAATAGTAGCCTGTAAAACAGGTCAAACTT
GTGACCTGAGTGGGGGTTTAATAGATAAATGATGAATTAGATGAAATGTT
TGCCAGGTGAACGAAAGGTTATTGTAGCCTGGAGTCAGAATAGCAATCGC
TGAATGTAGCATACAGTAACTGTACTAAAATATATTGATAAATCTAACAA
GGCTGGACTCCGGGCTAAGCTGTTTAGCTTATATTTCGCCCAGCCTACTT
CTTTCTGCAAAATTTAAAACATATTCGCCAAAACAGCAGTTACTCAAGCA
ACTGGATATGGTTTTGGAAACGGTCAGACGTTTCAAGTAACATCCACTAC
TTTTCGTCAGTGACTGTGAGCAAGATTAGTCGAGCTACTTGAAACGTCTG
ACCGTTTGCAAAATCATATCCCGTTGCTTCAGTAACTGCTTTTTTGGCGT
ATCTTATTACCTGGATGTCTAATCTTCATCGACGTTTGAAACATATCTTT
GGAAATCAAACTTATACAATATATTTTATGCCCCCAGGTACTGTAGTAGT
AGCTGACAACATCATCTACCCTGGTGCTCCAGACTATGCGGACTACGTGC
GGACATGCGGCAAGTATGACTCCACATTCCACGAGAGTCTTCTTGAGTAC
AGCAAGGACGAAATCGACGGGCTCGAGAAATCTGTGTTTCGAGGCTAA Coding sequence (CDS) from alignment at Sc0000308:97987..103934- >transcript:BL96025_evm0 ID=transcript:BL96025_evm0|Name=transcript:BL96025_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=3780bp|location=Sequence derived from alignment at Sc0000308:97987..103934- (Branchiostoma lanceolatum)
ATGACGATGGTTATAATGCTTTATAAGCTGCGTCTGTGGACAGGACTGCA
AAGACTGTCAGGTGGTATGATCAAGCTATTCCCGTATGTGAGAGCGCAGA
CGTCAGAAAGTGCTATGACTAAAGAACAGCGCGTCCTGCAGTATGTTCAG
CAGAACGCGTCACGTGGGGACCCGGACAGCGTCCTGGCAGCAGTGGACAA
GTTCGGTTGGGAGACGGAGTGGGCCATGAATGTAGGGGATGTCAAAGGAC
AGATCCTGGACCGGTTCGTGAAGGAGACGGCGCCCCAGACCATGCTGGAG
CTGGGCACGTACATGGGCTACTCCGCCATCAGGACCGTTAGGCTGCTGCC
GGAAACAGCCAAGTTCATGACCGTGGAGTTCGATCAAGAGAACGCCGCGG
TTGCCAGGGAGATGATCGCATTTGCAGGGCTACAAAACAGGATTGTCCAG
ATCACATCTGACACCGCTGACGTCATTCCCCAGCTGAAGACGAAGTATGA
CGTAGAAACGCTTGACATGGTGTTTATAGACCACTGGAAGGACGTATACC
TCAGGGATATCAAACTACTTGAGACAAACAAGTTACTACGCAAAGGTACT
GTAGTAGTAGCTGACAACATCATCTACCCTGGTGCTCCAGACTATGCGGA
CTACGTGCGGACATGCGGCAAGTATGACTCCACATTCCACGAGAGTCTTC
TTGAGTACAGCAAGGACGAAATCGACGGGCTCGAGAAATCTGTGTTTCGA
GGCTAAATGACGATGGTTATAATGCTTTATAAGCTGCGTCTGTGGACAGG
ACTGCAAAGACTGTCAGGTGGTATGATCAAGCTATTCCCGTATGTGAGAG
CGCAGACGTCAGAAAGTGCTATGACTAAAGAACAGCGCGTCCTGCAGTAT
GTTCAGCAGAACGCGTCACGTGGGGACCCGGACAGCGTCCTGGCAGCAGT
GGACAAGTTCGGTTGGGAGACGGAGTGGGCCATGAATGTAGGGGATGTCA
AAGGACAGATCCTGGACCGGTTCGTGAAGGAGACGGCGCCCCAGACCATG
CTGGAGCTGGGCACGTACATGGGCTACTCCGCCATCAGGACCGTTAGGCT
GCTGCCGGAAACAGCCAAGTTCATGACCGTGGAGTTCGATCAAGAGAACG
CCGCGGTTGCCAGGGAGATGATCGCATTTGCAGGGCTACAAAACAGGATT
GTCCAGATCACATCTGACACCGCTGACGTCATTCCCCAGCTGAAGACGAA
GTATGACGTAGAAACGCTTGACATGGTGTTTATAGACCACTGGAAGGACG
TATACCTCAGGGATATCAAACTACTTGAGACAAACAAGTTACTACGCAAA
GGTACTGTAGTAGTAGCTGACAACATCATCTACCCTGGTGCTCCAGACTA
TGCGGACTACGTGCGGACATGCGGCAAGTATGACTCCACATTCCACGAGA
GTCTTCTTGAGTACAGCAAGGACGAAATCGACGGGCTCGAGAAATCTGTG
TTTCGAGGCTAAATGACGATGGTTATAATGCTTTATAAGCTGCGTCTGTG
GACAGGACTGCAAAGACTGTCAGGTGGTATGATCAAGCTATTCCCGTATG
TGAGAGCGCAGACGTCAGAAAGTGCTATGACTAAAGAACAGCGCGTCCTG
CAGTATGTTCAGCAGAACGCGTCACGTGGGGACCCGGACAGCGTCCTGGC
AGCAGTGGACAAGTTCGGTTGGGAGACGGAGTGGGCCATGAATGTAGGGG
ATGTCAAAGGACAGATCCTGGACCGGTTCGTGAAGGAGACGGCGCCCCAG
ACCATGCTGGAGCTGGGCACGTACATGGGCTACTCCGCCATCAGGACCGT
TAGGCTGCTGCCGGAAACAGCCAAGTTCATGACCGTGGAGTTCGATCAAG
AGAACGCCGCGGTTGCCAGGGAGATGATCGCATTTGCAGGGCTACAAAAC
AGGATTGTCCAGATCACATCTGACACCGCTGACGTCATTCCCCAGCTGAA
GACGAAGTATGACGTAGAAACGCTTGACATGGTGTTTATAGACCACTGGA
AGGACGTATACCTCAGGGATATCAAACTACTTGAGACAAACAAGTTACTA
CGCAAAGGTACTGTAGTAGTAGCTGACAACATCATCTACCCTGGTGCTCC
AGACTATGCGGACTACGTGCGGACATGCGGCAAGTATGACTCCACATTCC
ACGAGAGTCTTCTTGAGTACAGCAAGGACGAAATCGACGGGCTCGAGAAA
TCTGTGTTTCGAGGCTAAATGACGATGGTTATAATGCTTTATAAGCTGCG
TCTGTGGACAGGACTGCAAAGACTGTCAGGTGGTATGATCAAGCTATTCC
CGTATGTGAGAGCGCAGACGTCAGAAAGTGCTATGACTAAAGAACAGCGC
GTCCTGCAGTATGTTCAGCAGAACGCGTCACGTGGGGACCCGGACAGCGT
CCTGGCAGCAGTGGACAAGTTCGGTTGGGAGACGGAGTGGGCCATGAATG
TAGGGGATGTCAAAGGACAGATCCTGGACCGGTTCGTGAAGGAGACGGCG
CCCCAGACCATGCTGGAGCTGGGCACGTACATGGGCTACTCCGCCATCAG
GACCGTTAGGCTGCTGCCGGAAACAGCCAAGTTCATGACCGTGGAGTTCG
ATCAAGAGAACGCCGCGGTTGCCAGGGAGATGATCGCATTTGCAGGGCTA
CAAAACAGGATTGTCCAGATCACATCTGACACCGCTGACGTCATTCCCCA
GCTGAAGACGAAGTATGACGTAGAAACGCTTGACATGGTGTTTATAGACC
ACTGGAAGGACGTATACCTCAGGGATATCAAACTACTTGAGACAAACAAG
TTACTACGCAAAGGTACTGTAGTAGTAGCTGACAACATCATCTACCCTGG
TGCTCCAGACTATGCGGACTACGTGCGGACATGCGGCAAGTATGACTCCA
CATTCCACGAGAGTCTTCTTGAGTACAGCAAGGACGAAATCGACGGGCTC
GAGAAATCTGTGTTTCGAGGCTAAATGACGATGGTTATAATGCTTTATAA
GCTGCGTCTGTGGACAGGACTGCAAAGACTGTCAGGTGGTATGATCAAGC
TATTCCCGTATGTGAGAGCGCAGACGTCAGAAAGTGCTATGACTAAAGAA
CAGCGCGTCCTGCAGTATGTTCAGCAGAACGCGTCACGTGGGGACCCGGA
CAGCGTCCTGGCAGCAGTGGACAAGTTCGGTTGGGAGACGGAGTGGGCCA
TGAATGTAGGGGATGTCAAAGGACAGATCCTGGACCGGTTCGTGAAGGAG
ACGGCGCCCCAGACCATGCTGGAGCTGGGCACGTACATGGGCTACTCCGC
CATCAGGACCGTTAGGCTGCTGCCGGAAACAGCCAAGTTCATGACCGTGG
AGTTCGATCAAGAGAACGCCGCGGTTGCCAGGGAGATGATCGCATTTGCA
GGGCTACAAAACAGGATTGTCCAGATCACATCTGACACCGCTGACGTCAT
TCCCCAGCTGAAGACGAAGTATGACGTAGAAACGCTTGACATGGTGTTTA
TAGACCACTGGAAGGACGTATACCTCAGGGATATCAAACTACTTGAGACA
AACAAGTTACTACGCAAAGGTACTGTAGTAGTAGCTGACAACATCATCTA
CCCTGGTGCTCCAGACTATGCGGACTACGTGCGGACATGCGGCAAGTATG
ACTCCACATTCCACGAGAGTCTTCTTGAGTACAGCAAGGACGAAATCGAC
GGGCTCGAGAAATCTGTGTTTCGAGGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000308 | genome | Sc0000308:97987..103934 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96025_evm0 |
| Biotype | protein_coding |
|
