transcript:BL95785_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95785_evm1
Unique Nametranscript:BL95785_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95785_evm1

>transcript:BL95785_evm1-protein ID=transcript:BL95785_evm1-protein|Name=transcript:BL95785_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=188bp
MVETFGGTKLIPDDITSEALVLQRMFSAQNIGVGATTICSYWDDYDDDEE
DDGQEDEEDEFEDPDEEDAKTDLAEELEIWEEYLKEEGGPFIAGKEFTMA
DVSFFPVLAYVVWMGFQPKKAYPNLNDYYLAVRDRPTVQDVWPADWNKPS
PEKEFLYLDEYLEEEEKPKDKTKAKTKGKWKGKGKGKK
Run BLAST on NCBI

mRNA from alignment at Sc0000123:190579..192816+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95785_evm1 ID=transcript:BL95785_evm1|Name=transcript:BL95785_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2238bp|location=Sequence derived from alignment at Sc0000123:190579..192816+ (Branchiostoma lanceolatum)
ATGGTTGTTTGTTTGTTTGTTTGTTTCATATCTAAATGTTTTGCTAGTTG
GACATACATTCTTCATAGCTAGGGGGGCCGGTGCTCTCCCCCCTCCCCAT
TTCTGGTATTGGTTGTCCTACAACGTCTTGGTAGCTGGGAGGGGGTGTGA
CATGAGAGGAAGAAGACCGGCCATTGGACCTCTGGAGACGCTCCAGTGCA
AGAACAACCCTTGGGGGAAGACTCAAGTCTCTCTCCCCGACTAGTCTAGC
TCGTTCGGAAGTATCTTCGTTAGCTATCCTGCTGAATACCCTGGCGTTAT
CAGCATTTTCCGTGGTACGCACGATGTTATCATTAATCTTCTTCAGACAA
AGTCCCAAGGCGGTGAGCATCACCCAGATCGCCATGGGAACACACATGAA
GAATACAATGTACCTACTTATTCTTGGGACACATCTAGAGATGATCGTTT
CGGAAATGACATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNACTACTGCCCTGTCTGTACATGCAA
CGTTACATACAATTTACCTGATATGCCATTTTGTCCTAGGAAACCTTCGG
AGGAACAAAACTGATTCCTGATGACATCACGAGCGAGGCTCTGGTGCTAC
AGCGCATGTTCAGTGCGCAGAACATCGGGGTGGGCGCCACGACCATCTGC
AGCTACTGGGATGACTATGATGACGACGAGGAGGATGACGGACAGGAAGA
CGTAAATCATGTTTCTTTACACTTACAATTAACATGTTGGCTTGTTAGCA
TGAAAACTACATGTATAGCCTTCAATATGCGTCCGTGCTTTTGTGCGGGC
TGTTTCCCCAATCTAGATGCCTTCAAGTCCTGGTGCTGTCAGTATGACGT
ACTGTCTTGGTAGGAATGCATAATTTACCTACATTGTACGATACTTAGTA
TATACATATCAATGTCCCCATAAAACATCAAATTTAAGCCATCTTGTATA
ATGATAGACATCATGAAGCTTAATCGGCGACATGATTGAAATATTCTATA
ACGAAATTTTAAAGTTGACATGGTGAAATTTTCCTTCATTGTTATACACG
ACATATAACGTTATGATATACATTTTCATTTGATGTTGTCTATCAGGAGG
AAGATGAGTTCGAGGATCCAGATGAGGAAGATGCGAAGACGGATCTGGCG
GAAGAACTCGAGATTTGGGAGGAATATCTGAAGGAGGTGAGTTGTTTTGC
AGTATGAATTACAAATTGAGGTTCCTAGCGGTCACCCTTATGTCAGCCAG
ATTGTGATCATCTATATTTTCTCTGTGTTGAAAGGCAAGCCATTCTTATC
ATTAGCCTCTTCCGACAGAGTAAGGAAGCTCCATTTAGAATCAGTCTATA
CAACGATTGTTCTACCTCATGTTGCAGCTAATTTGTGGACATTCCGGAAA
TTATATGATGTTATGCAAGTTGAAGTCAAGGAATGATACCATATAGGCGC
CGATAAAAACGTGTTATAGCCAAGTTACCTTGTAGAACTGATTTTTCTGC
GAACGTGTTCAACAGATGACTACTTTTCTTACAAGTGTATCTATATTTCC
AACAGGAAGGGGGTCCATTCATCGCTGGGAAAGAGTTCACCATGGCAGAT
GTTTCTTTCTTCCCCGTGCTGGCCTACGTTGTGTGGATGGGGTTCCAGCC
CAAGAAAGCCTATCCCAACCTGAACGACTACTACTTGGCGGTAAGGTCCT
CTTACACTTACTGAGCTCGTCACCGGTTCCTTCATGTTCTGATGGGATAA
TAACTGACATATGACAGATATGACGCCAAGTTTGTTCAGAAAACATAGCT
TTTGTGCATGGTTTGTTTTTAAGTTTAGCTGAAGCAACATTAATACATCT
ACGATGTATAAATCATGACTTTCTGATTTCTTTGTAGCCGGTTTGAACTG
TCATTGCACTTTCCAGATTTTATAATTAAGCTGTATATTCATTTCTTCAT
TTCATTTTCCGCAGGTCCGGGACCGGCCGACCGTTCAGGATGTTTGGCCG
GCAGACTGGAACAAACCATCACCAGAAAAGGAGTTCCTCTACTTGGACGA
GTACCTGGAGGAGGAGGAAAAGCCCAAGGATAAGACAAAGGCTAAGACTA
AGGGGAAGTGGAAGGGCAAGGGGAAGGGAAAGAAATAG

Coding sequence (CDS) from alignment at Sc0000123:190579..192816+

>transcript:BL95785_evm1 ID=transcript:BL95785_evm1|Name=transcript:BL95785_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=2835bp|location=Sequence derived from alignment at Sc0000123:190579..192816+ (Branchiostoma lanceolatum)
ATGGTTGAAACCTTCGGAGGAACAAAACTGATTCCTGATGACATCACGAG
CGAGGCTCTGGTGCTACAGCGCATGTTCAGTGCGCAGAACATCGGGGTGG
GCGCCACGACCATCTGCAGCTACTGGGATGACTATGATGACGACGAGGAG
GATGACGGACAGGAAGACGAGGAAGATGAGTTCGAGGATCCAGATGAGGA
AGATGCGAAGACGGATCTGGCGGAAGAACTCGAGATTTGGGAGGAATATC
TGAAGGAGGAAGGGGGTCCATTCATCGCTGGGAAAGAGTTCACCATGGCA
GATGTTTCTTTCTTCCCCGTGCTGGCCTACGTTGTGTGGATGGGGTTCCA
GCCCAAGAAAGCCTATCCCAACCTGAACGACTACTACTTGGCGGTCCGGG
ACCGGCCGACCGTTCAGGATGTTTGGCCGGCAGACTGGAACAAACCATCA
CCAGAAAAGGAGTTCCTCTACTTGGACGAGTACCTGGAGGAGGAGGAAAA
GCCCAAGGATAAGACAAAGGCTAAGACTAAGGGGAAGTGGAAGGGCAAGG
GGAAGGGAAAGAAATAGATGGTTGAAACCTTCGGAGGAACAAAACTGATT
CCTGATGACATCACGAGCGAGGCTCTGGTGCTACAGCGCATGTTCAGTGC
GCAGAACATCGGGGTGGGCGCCACGACCATCTGCAGCTACTGGGATGACT
ATGATGACGACGAGGAGGATGACGGACAGGAAGACGAGGAAGATGAGTTC
GAGGATCCAGATGAGGAAGATGCGAAGACGGATCTGGCGGAAGAACTCGA
GATTTGGGAGGAATATCTGAAGGAGGAAGGGGGTCCATTCATCGCTGGGA
AAGAGTTCACCATGGCAGATGTTTCTTTCTTCCCCGTGCTGGCCTACGTT
GTGTGGATGGGGTTCCAGCCCAAGAAAGCCTATCCCAACCTGAACGACTA
CTACTTGGCGGTCCGGGACCGGCCGACCGTTCAGGATGTTTGGCCGGCAG
ACTGGAACAAACCATCACCAGAAAAGGAGTTCCTCTACTTGGACGAGTAC
CTGGAGGAGGAGGAAAAGCCCAAGGATAAGACAAAGGCTAAGACTAAGGG
GAAGTGGAAGGGCAAGGGGAAGGGAAAGAAATAGATGGTTGAAACCTTCG
GAGGAACAAAACTGATTCCTGATGACATCACGAGCGAGGCTCTGGTGCTA
CAGCGCATGTTCAGTGCGCAGAACATCGGGGTGGGCGCCACGACCATCTG
CAGCTACTGGGATGACTATGATGACGACGAGGAGGATGACGGACAGGAAG
ACGAGGAAGATGAGTTCGAGGATCCAGATGAGGAAGATGCGAAGACGGAT
CTGGCGGAAGAACTCGAGATTTGGGAGGAATATCTGAAGGAGGAAGGGGG
TCCATTCATCGCTGGGAAAGAGTTCACCATGGCAGATGTTTCTTTCTTCC
CCGTGCTGGCCTACGTTGTGTGGATGGGGTTCCAGCCCAAGAAAGCCTAT
CCCAACCTGAACGACTACTACTTGGCGGTCCGGGACCGGCCGACCGTTCA
GGATGTTTGGCCGGCAGACTGGAACAAACCATCACCAGAAAAGGAGTTCC
TCTACTTGGACGAGTACCTGGAGGAGGAGGAAAAGCCCAAGGATAAGACA
AAGGCTAAGACTAAGGGGAAGTGGAAGGGCAAGGGGAAGGGAAAGAAATA
GATGGTTGAAACCTTCGGAGGAACAAAACTGATTCCTGATGACATCACGA
GCGAGGCTCTGGTGCTACAGCGCATGTTCAGTGCGCAGAACATCGGGGTG
GGCGCCACGACCATCTGCAGCTACTGGGATGACTATGATGACGACGAGGA
GGATGACGGACAGGAAGACGAGGAAGATGAGTTCGAGGATCCAGATGAGG
AAGATGCGAAGACGGATCTGGCGGAAGAACTCGAGATTTGGGAGGAATAT
CTGAAGGAGGAAGGGGGTCCATTCATCGCTGGGAAAGAGTTCACCATGGC
AGATGTTTCTTTCTTCCCCGTGCTGGCCTACGTTGTGTGGATGGGGTTCC
AGCCCAAGAAAGCCTATCCCAACCTGAACGACTACTACTTGGCGGTCCGG
GACCGGCCGACCGTTCAGGATGTTTGGCCGGCAGACTGGAACAAACCATC
ACCAGAAAAGGAGTTCCTCTACTTGGACGAGTACCTGGAGGAGGAGGAAA
AGCCCAAGGATAAGACAAAGGCTAAGACTAAGGGGAAGTGGAAGGGCAAG
GGGAAGGGAAAGAAATAGATGGTTGAAACCTTCGGAGGAACAAAACTGAT
TCCTGATGACATCACGAGCGAGGCTCTGGTGCTACAGCGCATGTTCAGTG
CGCAGAACATCGGGGTGGGCGCCACGACCATCTGCAGCTACTGGGATGAC
TATGATGACGACGAGGAGGATGACGGACAGGAAGACGAGGAAGATGAGTT
CGAGGATCCAGATGAGGAAGATGCGAAGACGGATCTGGCGGAAGAACTCG
AGATTTGGGAGGAATATCTGAAGGAGGAAGGGGGTCCATTCATCGCTGGG
AAAGAGTTCACCATGGCAGATGTTTCTTTCTTCCCCGTGCTGGCCTACGT
TGTGTGGATGGGGTTCCAGCCCAAGAAAGCCTATCCCAACCTGAACGACT
ACTACTTGGCGGTCCGGGACCGGCCGACCGTTCAGGATGTTTGGCCGGCA
GACTGGAACAAACCATCACCAGAAAAGGAGTTCCTCTACTTGGACGAGTA
CCTGGAGGAGGAGGAAAAGCCCAAGGATAAGACAAAGGCTAAGACTAAGG
GGAAGTGGAAGGGCAAGGGGAAGGGAAAGAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95785gene:BL95785Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95785_evm1transcript:BL95785_evm1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95785_evm1-E1BL95785_evm1-E1-1564476830-325466Branchiostoma lanceolatumexon
BL95785_evm1-E2BL95785_evm1-E2-1564476830-325468Branchiostoma lanceolatumexon
BL95785_evm1-E3BL95785_evm1-E3-1564476830-325470Branchiostoma lanceolatumexon
BL95785_evm1-E4BL95785_evm1-E4-1564476830-325472Branchiostoma lanceolatumexon
BL95785_evm1-E5BL95785_evm1-E5-1564476830-325474Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000123genomeSc0000123:190579..192816 +
Properties
Property NameValue
Transcript idBL95785_evm1
Biotypeprotein_coding