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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95378_evm1 >transcript:BL95378_evm1-protein ID=transcript:BL95378_evm1-protein|Name=transcript:BL95378_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=505bp
MTFHPSRRASVQTQKRDHFIGRVNVPLRDVTHANSTTFVVLNPEREYRQG
DVLTAVIVARDARGRPKTYGGDFFRAKLVSVRPREASSAGHVTDHGNGTY
TVQFPLYWTGDVTVSVQLVHPSEAVRVLRRIRDVPAKRGYECIFLNSQTG
TREERPCFTSQPPGRPLHQLCDFSRKEANGSWFCERPDTLPCSAIAGCRR
NVTEKGKLSSSRLGLASDQEMKLFRRPFVEAEPLEQENPRPIHVQVSGQP
LLHHLPACSVSTPEVLGHGYWSGNVWKSSVCRVRYFSRIDTRKCLTNKTI
YIQGDSTIRQWFLWLAAGHSKGSLKPGPAIVVNKESNVFVTYRSHGLPVL
GSQWMNISNIRYVVDELDSIHGGPNTVIVLGLWAHFTPEPLEMVRARLHA
IQTAIRRLLQRCPGTRVFVRTGTTREHKGMSFYLRGSDWLAYQITREIRQ
IFGPDRNVAVLDTWDMSVCQWEEDDVHPGPAMIGSQMNMLLSHICPEKVN
ITAIK Run BLAST on NCBI mRNA from alignment at Sc0000033:360903..363490+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95378_evm1 ID=transcript:BL95378_evm1|Name=transcript:BL95378_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2588bp|location=Sequence derived from alignment at Sc0000033:360903..363490+ (Branchiostoma lanceolatum)
ATGACCTTTCACCCATCTCGTCGAGCAAGTGTTCAGACGCAAAAGCGAGA
TCACTTCATTGGACGAGTTAATGTCCCCCTGAGGGATGTTACACATGCAA
ACAGCACGACGTTTGTCGTGCTCAACCCAGAGCGGGAGTACCGACAAGGA
GACGTCCTTACTGCCGTCATAGTGGCGAGGGACGCCAGAGGAAGGCCCAA
GACGTACGGAGGAGATTTCTTCCGCGCCAAGCTCGTCAGTGTGCGGCCCA
GGGAGGCGAGCAGCGCTGGGCACGTGACCGACCATGGCAACGGCACTTAC
ACGGTGCAGTTCCCGCTGTACTGGACAGGGGACGTTACGGTGAGTGCCTG
GCGAACTTATTTGATGTTATGGAGAGCGCATTGAACAACTCTGAGCAATT
CGTGTCGGAGCACCAGTATGGTCAATTATGTTCTGTGTTTCGTGTGGACT
AAATGCACTATACTTGGGCGCACGCACGTGACGTGACAGCAATCGCCTTG
CTAGTGTCTTAGATGTATCCAAGATGACTATCTTTAAGGAAATCCATAGT
CTGGTGTGCTTCGTGTACGCCGAGGCATAGGCTGGCAGGCATGTTGAAAC
AATGGGAAATCAACCAACCAACTAAATGTATCAAAACATATTACAACTTG
GCCACGTATTCAACCCCCCAAAACAACTAAATGTATCAAAACTAAATATA
CCATTTAACTCATTTGTATGGCCTATGATGTGGCTGAAAATATATATATC
TTTCTAAAATGTCATCTATTACAGGTGTCGGTCCAACTTGTCCACCCGAG
TGAAGCGGTGAGGGTACTGCGGCGCATACGAGACGTCCCCGCGAAGAGAG
GGTACGAGTGTATCTTCTTAAACTCCCAGACGGGTACCCGGGAGGAACGA
CCGTGCTTCACCTCCCAGCCCCCGGGACGACCGCTCCACCAACTGTGCGA
TTTCTCAAGAAAGGAAGCGAACGGAAGCTGGTTCTGTGAAAGACCGGACA
CCTTGCCGTGCTCTGCCATCGCGGGATGTCGTCGAAACGTCACCGAAAAG
GGAAAGCTGTCGTCGTCAAGACTTGGCCTCGCATCAGATCAAGAAATGAA
ACTATTTAGAAGGTTTAGAAATACCATATCTTTTCATTTCTGCGCCATGT
ATGAATCAATGTAGAATGTAAAATTATGGGAGCTAAACGTTTCCAATAGC
GAAACGAAAAGACTGGAAACTATCTTCAAAGCCGGGCTGAGTAAGCCACT
CAATCAACAGTTTTATGAATTCACAAAGTTCACAGATAGATGTAAGGACT
CCATGTCGAAATTGATGTGCCTGTTAATATAATGTAGCCCTTTTTGTCCT
TATACAGACCGTTTGTAGAGGCAGAACCTCTTGAGCAGGAGAACCCAAGA
CCCATACATGTCCAGGTATCAGGACAGCCTCTCCTCCACCATCTTCCCGC
GTGTTCTGTGAGCACGCCCGAAGTTCTAGGTCATGGTTACTGGTCTGGCA
ACGTGTGGAAGTCCTCGGTCTGCAGAGTGAGATACTTTTCAAGGATAGAC
ACGCGAAAATGTCTTACCAATAAGACTATCTACATTCAGGGCGATTCAAC
CATCAGACAGTGGTTCCTTTGGTTGGCCGCGGGGCACAGCAAGGGAAGCC
TCAAACCAGGTAGGACAAGGTTTTGCAATTCATCGACATTTTATCGACCA
CAACGAAAAACGACAAAAAATTAAACCCTCTGAATGTTCAGTCGTTCTCA
TGTGTTGCGTTGTGTTGGCCCGCCCACTAATTTCTGACTTGAGAGTTAAC
GTTTCCTGAGCCATTACGTCAAAATAAGTGGCTTTCATGTGCCCGAAGTC
TGCAACGCCCCCCGACTTCGTTCGGCTTTGGTGTATATTCCTGACATTCA
CCACCATAAGACCAAAAAGTCTGTCAAAATTTGTGAGTAGATGCTTTTTT
TTCTTTCCTCCGTTAAACTTCAGTTTGATCTTCAATTATGTTTTCCATCA
CTAAAAATATGTGATATAGTTTCAGTTCTTGTACGCTTTGTTGTTTTAGG
GCCTGCGATTGTTGTCAACAAAGAATCGAACGTCTTCGTTACCTACCGGT
CACACGGCCTGCCCGTGCTGGGATCGCAGTGGATGAATATCTCCAACATC
AGGTACGTTGTTGACGAGCTGGACTCCATCCATGGCGGCCCAAATACAGT
CATAGTTCTTGGTCTGTGGGCTCACTTTACTCCGGAGCCTCTAGAGATGG
TTCGGGCTCGACTACACGCCATACAGACCGCCATACGCCGTCTTCTCCAG
CGCTGTCCAGGCACACGGGTGTTCGTGAGAACTGGAACAACGCGAGAACA
CAAAGGCATGTCCTTCTACCTGCGGGGAAGCGACTGGCTGGCGTATCAGA
TCACGCGAGAAATCAGACAGATATTCGGGCCTGACAGGAACGTGGCGGTG
TTGGACACGTGGGACATGAGCGTCTGTCAGTGGGAGGAGGATGACGTTCA
CCCAGGGCCCGCGATGATAGGCAGTCAGATGAACATGCTCCTGTCTCACA
TATGCCCCGAGAAGGTTAATATTACAGCAATCAAATAG Coding sequence (CDS) from alignment at Sc0000033:360903..363490+ >transcript:BL95378_evm1 ID=transcript:BL95378_evm1|Name=transcript:BL95378_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=6072bp|location=Sequence derived from alignment at Sc0000033:360903..363490+ (Branchiostoma lanceolatum)
ATGACCTTTCACCCATCTCGTCGAGCAAGTGTTCAGACGCAAAAGCGAGA
TCACTTCATTGGACGAGTTAATGTCCCCCTGAGGGATGTTACACATGCAA
ACAGCACGACGTTTGTCGTGCTCAACCCAGAGCGGGAGTACCGACAAGGA
GACGTCCTTACTGCCGTCATAGTGGCGAGGGACGCCAGAGGAAGGCCCAA
GACGTACGGAGGAGATTTCTTCCGCGCCAAGCTCGTCAGTGTGCGGCCCA
GGGAGGCGAGCAGCGCTGGGCACGTGACCGACCATGGCAACGGCACTTAC
ACGGTGCAGTTCCCGCTGTACTGGACAGGGGACGTTACGGTGTCGGTCCA
ACTTGTCCACCCGAGTGAAGCGGTGAGGGTACTGCGGCGCATACGAGACG
TCCCCGCGAAGAGAGGGTACGAGTGTATCTTCTTAAACTCCCAGACGGGT
ACCCGGGAGGAACGACCGTGCTTCACCTCCCAGCCCCCGGGACGACCGCT
CCACCAACTGTGCGATTTCTCAAGAAAGGAAGCGAACGGAAGCTGGTTCT
GTGAAAGACCGGACACCTTGCCGTGCTCTGCCATCGCGGGATGTCGTCGA
AACGTCACCGAAAAGGGAAAGCTGTCGTCGTCAAGACTTGGCCTCGCATC
AGATCAAGAAATGAAACTATTTAGAAGACCGTTTGTAGAGGCAGAACCTC
TTGAGCAGGAGAACCCAAGACCCATACATGTCCAGGTATCAGGACAGCCT
CTCCTCCACCATCTTCCCGCGTGTTCTGTGAGCACGCCCGAAGTTCTAGG
TCATGGTTACTGGTCTGGCAACGTGTGGAAGTCCTCGGTCTGCAGAGTGA
GATACTTTTCAAGGATAGACACGCGAAAATGTCTTACCAATAAGACTATC
TACATTCAGGGCGATTCAACCATCAGACAGTGGTTCCTTTGGTTGGCCGC
GGGGCACAGCAAGGGAAGCCTCAAACCAGGGCCTGCGATTGTTGTCAACA
AAGAATCGAACGTCTTCGTTACCTACCGGTCACACGGCCTGCCCGTGCTG
GGATCGCAGTGGATGAATATCTCCAACATCAGGTACGTTGTTGACGAGCT
GGACTCCATCCATGGCGGCCCAAATACAGTCATAGTTCTTGGTCTGTGGG
CTCACTTTACTCCGGAGCCTCTAGAGATGGTTCGGGCTCGACTACACGCC
ATACAGACCGCCATACGCCGTCTTCTCCAGCGCTGTCCAGGCACACGGGT
GTTCGTGAGAACTGGAACAACGCGAGAACACAAAGGCATGTCCTTCTACC
TGCGGGGAAGCGACTGGCTGGCGTATCAGATCACGCGAGAAATCAGACAG
ATATTCGGGCCTGACAGGAACGTGGCGGTGTTGGACACGTGGGACATGAG
CGTCTGTCAGTGGGAGGAGGATGACGTTCACCCAGGGCCCGCGATGATAG
GCAGTCAGATGAACATGCTCCTGTCTCACATATGCCCCGAGAAGGTTAAT
ATTACAGCAATCAAATAGATGACCTTTCACCCATCTCGTCGAGCAAGTGT
TCAGACGCAAAAGCGAGATCACTTCATTGGACGAGTTAATGTCCCCCTGA
GGGATGTTACACATGCAAACAGCACGACGTTTGTCGTGCTCAACCCAGAG
CGGGAGTACCGACAAGGAGACGTCCTTACTGCCGTCATAGTGGCGAGGGA
CGCCAGAGGAAGGCCCAAGACGTACGGAGGAGATTTCTTCCGCGCCAAGC
TCGTCAGTGTGCGGCCCAGGGAGGCGAGCAGCGCTGGGCACGTGACCGAC
CATGGCAACGGCACTTACACGGTGCAGTTCCCGCTGTACTGGACAGGGGA
CGTTACGGTGTCGGTCCAACTTGTCCACCCGAGTGAAGCGGTGAGGGTAC
TGCGGCGCATACGAGACGTCCCCGCGAAGAGAGGGTACGAGTGTATCTTC
TTAAACTCCCAGACGGGTACCCGGGAGGAACGACCGTGCTTCACCTCCCA
GCCCCCGGGACGACCGCTCCACCAACTGTGCGATTTCTCAAGAAAGGAAG
CGAACGGAAGCTGGTTCTGTGAAAGACCGGACACCTTGCCGTGCTCTGCC
ATCGCGGGATGTCGTCGAAACGTCACCGAAAAGGGAAAGCTGTCGTCGTC
AAGACTTGGCCTCGCATCAGATCAAGAAATGAAACTATTTAGAAGACCGT
TTGTAGAGGCAGAACCTCTTGAGCAGGAGAACCCAAGACCCATACATGTC
CAGGTATCAGGACAGCCTCTCCTCCACCATCTTCCCGCGTGTTCTGTGAG
CACGCCCGAAGTTCTAGGTCATGGTTACTGGTCTGGCAACGTGTGGAAGT
CCTCGGTCTGCAGAGTGAGATACTTTTCAAGGATAGACACGCGAAAATGT
CTTACCAATAAGACTATCTACATTCAGGGCGATTCAACCATCAGACAGTG
GTTCCTTTGGTTGGCCGCGGGGCACAGCAAGGGAAGCCTCAAACCAGGGC
CTGCGATTGTTGTCAACAAAGAATCGAACGTCTTCGTTACCTACCGGTCA
CACGGCCTGCCCGTGCTGGGATCGCAGTGGATGAATATCTCCAACATCAG
GTACGTTGTTGACGAGCTGGACTCCATCCATGGCGGCCCAAATACAGTCA
TAGTTCTTGGTCTGTGGGCTCACTTTACTCCGGAGCCTCTAGAGATGGTT
CGGGCTCGACTACACGCCATACAGACCGCCATACGCCGTCTTCTCCAGCG
CTGTCCAGGCACACGGGTGTTCGTGAGAACTGGAACAACGCGAGAACACA
AAGGCATGTCCTTCTACCTGCGGGGAAGCGACTGGCTGGCGTATCAGATC
ACGCGAGAAATCAGACAGATATTCGGGCCTGACAGGAACGTGGCGGTGTT
GGACACGTGGGACATGAGCGTCTGTCAGTGGGAGGAGGATGACGTTCACC
CAGGGCCCGCGATGATAGGCAGTCAGATGAACATGCTCCTGTCTCACATA
TGCCCCGAGAAGGTTAATATTACAGCAATCAAATAGATGACCTTTCACCC
ATCTCGTCGAGCAAGTGTTCAGACGCAAAAGCGAGATCACTTCATTGGAC
GAGTTAATGTCCCCCTGAGGGATGTTACACATGCAAACAGCACGACGTTT
GTCGTGCTCAACCCAGAGCGGGAGTACCGACAAGGAGACGTCCTTACTGC
CGTCATAGTGGCGAGGGACGCCAGAGGAAGGCCCAAGACGTACGGAGGAG
ATTTCTTCCGCGCCAAGCTCGTCAGTGTGCGGCCCAGGGAGGCGAGCAGC
GCTGGGCACGTGACCGACCATGGCAACGGCACTTACACGGTGCAGTTCCC
GCTGTACTGGACAGGGGACGTTACGGTGTCGGTCCAACTTGTCCACCCGA
GTGAAGCGGTGAGGGTACTGCGGCGCATACGAGACGTCCCCGCGAAGAGA
GGGTACGAGTGTATCTTCTTAAACTCCCAGACGGGTACCCGGGAGGAACG
ACCGTGCTTCACCTCCCAGCCCCCGGGACGACCGCTCCACCAACTGTGCG
ATTTCTCAAGAAAGGAAGCGAACGGAAGCTGGTTCTGTGAAAGACCGGAC
ACCTTGCCGTGCTCTGCCATCGCGGGATGTCGTCGAAACGTCACCGAAAA
GGGAAAGCTGTCGTCGTCAAGACTTGGCCTCGCATCAGATCAAGAAATGA
AACTATTTAGAAGACCGTTTGTAGAGGCAGAACCTCTTGAGCAGGAGAAC
CCAAGACCCATACATGTCCAGGTATCAGGACAGCCTCTCCTCCACCATCT
TCCCGCGTGTTCTGTGAGCACGCCCGAAGTTCTAGGTCATGGTTACTGGT
CTGGCAACGTGTGGAAGTCCTCGGTCTGCAGAGTGAGATACTTTTCAAGG
ATAGACACGCGAAAATGTCTTACCAATAAGACTATCTACATTCAGGGCGA
TTCAACCATCAGACAGTGGTTCCTTTGGTTGGCCGCGGGGCACAGCAAGG
GAAGCCTCAAACCAGGGCCTGCGATTGTTGTCAACAAAGAATCGAACGTC
TTCGTTACCTACCGGTCACACGGCCTGCCCGTGCTGGGATCGCAGTGGAT
GAATATCTCCAACATCAGGTACGTTGTTGACGAGCTGGACTCCATCCATG
GCGGCCCAAATACAGTCATAGTTCTTGGTCTGTGGGCTCACTTTACTCCG
GAGCCTCTAGAGATGGTTCGGGCTCGACTACACGCCATACAGACCGCCAT
ACGCCGTCTTCTCCAGCGCTGTCCAGGCACACGGGTGTTCGTGAGAACTG
GAACAACGCGAGAACACAAAGGCATGTCCTTCTACCTGCGGGGAAGCGAC
TGGCTGGCGTATCAGATCACGCGAGAAATCAGACAGATATTCGGGCCTGA
CAGGAACGTGGCGGTGTTGGACACGTGGGACATGAGCGTCTGTCAGTGGG
AGGAGGATGACGTTCACCCAGGGCCCGCGATGATAGGCAGTCAGATGAAC
ATGCTCCTGTCTCACATATGCCCCGAGAAGGTTAATATTACAGCAATCAA
ATAGATGACCTTTCACCCATCTCGTCGAGCAAGTGTTCAGACGCAAAAGC
GAGATCACTTCATTGGACGAGTTAATGTCCCCCTGAGGGATGTTACACAT
GCAAACAGCACGACGTTTGTCGTGCTCAACCCAGAGCGGGAGTACCGACA
AGGAGACGTCCTTACTGCCGTCATAGTGGCGAGGGACGCCAGAGGAAGGC
CCAAGACGTACGGAGGAGATTTCTTCCGCGCCAAGCTCGTCAGTGTGCGG
CCCAGGGAGGCGAGCAGCGCTGGGCACGTGACCGACCATGGCAACGGCAC
TTACACGGTGCAGTTCCCGCTGTACTGGACAGGGGACGTTACGGTGTCGG
TCCAACTTGTCCACCCGAGTGAAGCGGTGAGGGTACTGCGGCGCATACGA
GACGTCCCCGCGAAGAGAGGGTACGAGTGTATCTTCTTAAACTCCCAGAC
GGGTACCCGGGAGGAACGACCGTGCTTCACCTCCCAGCCCCCGGGACGAC
CGCTCCACCAACTGTGCGATTTCTCAAGAAAGGAAGCGAACGGAAGCTGG
TTCTGTGAAAGACCGGACACCTTGCCGTGCTCTGCCATCGCGGGATGTCG
TCGAAACGTCACCGAAAAGGGAAAGCTGTCGTCGTCAAGACTTGGCCTCG
CATCAGATCAAGAAATGAAACTATTTAGAAGACCGTTTGTAGAGGCAGAA
CCTCTTGAGCAGGAGAACCCAAGACCCATACATGTCCAGGTATCAGGACA
GCCTCTCCTCCACCATCTTCCCGCGTGTTCTGTGAGCACGCCCGAAGTTC
TAGGTCATGGTTACTGGTCTGGCAACGTGTGGAAGTCCTCGGTCTGCAGA
GTGAGATACTTTTCAAGGATAGACACGCGAAAATGTCTTACCAATAAGAC
TATCTACATTCAGGGCGATTCAACCATCAGACAGTGGTTCCTTTGGTTGG
CCGCGGGGCACAGCAAGGGAAGCCTCAAACCAGGGCCTGCGATTGTTGTC
AACAAAGAATCGAACGTCTTCGTTACCTACCGGTCACACGGCCTGCCCGT
GCTGGGATCGCAGTGGATGAATATCTCCAACATCAGGTACGTTGTTGACG
AGCTGGACTCCATCCATGGCGGCCCAAATACAGTCATAGTTCTTGGTCTG
TGGGCTCACTTTACTCCGGAGCCTCTAGAGATGGTTCGGGCTCGACTACA
CGCCATACAGACCGCCATACGCCGTCTTCTCCAGCGCTGTCCAGGCACAC
GGGTGTTCGTGAGAACTGGAACAACGCGAGAACACAAAGGCATGTCCTTC
TACCTGCGGGGAAGCGACTGGCTGGCGTATCAGATCACGCGAGAAATCAG
ACAGATATTCGGGCCTGACAGGAACGTGGCGGTGTTGGACACGTGGGACA
TGAGCGTCTGTCAGTGGGAGGAGGATGACGTTCACCCAGGGCCCGCGATG
ATAGGCAGTCAGATGAACATGCTCCTGTCTCACATATGCCCCGAGAAGGT
TAATATTACAGCAATCAAATAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000033 | genome | Sc0000033:360903..363490 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95378_evm1 |
| Biotype | protein_coding |
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