transcript:BL95287_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95287_evm1
Unique Nametranscript:BL95287_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95287_evm1

>transcript:BL95287_evm1-protein ID=transcript:BL95287_evm1-protein|Name=transcript:BL95287_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=103bp
MMSGALAQFTCPADHVPPYPLFCPQPGDPPNATACCYDSGRIPQTYCCNP
GDILAGLAGWVIAVIVVVFLLFFGSILMCICCCCSCCLLAQRRQQSQYVV
ITP
Run BLAST on NCBI

mRNA from alignment at Sc0000017:3025252..3027150-

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95287_evm1 ID=transcript:BL95287_evm1|Name=transcript:BL95287_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1899bp|location=Sequence derived from alignment at Sc0000017:3025252..3027150- (Branchiostoma lanceolatum)
ATGATGTCCGGTAAGTACATGCCAATACTTCCGTAAAAATGTTAGAACAA GTTGCTAGATTTGTTACTCATTGATTAACATTACAGTAGCAAAGTAGTTG GTTCCCTATAATCTACAAAGTTGCGTATATACCTCGGAGAATTGTTCTAG TTGACCGTATAGGAAAATTCCTGACGTGACTTATAATTGCTGTACAGCAT ATATACTATGTAGTAGGTTATCTAGAGTTACGACCAATATGGCGAATGAG AATTGTGTGTGTCCCGACTAAAGGTATACGGGCGTAATAATAGCGTATGA TATGCACAGATAATAGACAAGTTCAGTATATCATGGATACCACTAGATTT GCAACGTCTCAACCTATTATGATTCAATATAATTACTAAGAGGTCATTTC GTTTCTTCTAATCTTCATGAAAAGCATGGCGTCTTGCCCCCAAATTTTGT TCAGTTAAGTTTTCCATTGGCAAACGCAAGGTGCGGATGTTTGTTGTGAC GTCACCACGTCACATGGTTGAAGTGTTTAATCAAGTCTAATTTGCATACG TCCGTACATGACCTCTGTACATCAAACTGCAAAAGTAGCCTTTACTATCC AAGGCTTTTGTAGGATAAATATCGTCTTTGTAGCTAGTCTCGTGGCTTGT TTTCGGTCTGTGTATGTTTGTCTTGGTGTGTGTCTGCAATTATTTGAATC TATAGAGTGACAGGATGTGAGGTGGAAGATAGTGTAGCCGGACATTTGCA GGATGGACTTGGCCATAGATCAAAGTTGTATACATGTAGTCACAACATGT ATACAACTTTGATCTATGGCCAAGTCCATCCTGCAAATGTCCGGCTACAC TTTCTTCCACCTTTTTTTGTAGTCATAAAATGCATAGACAGACTTATTGA TACATTCACAATGACTGATAAAACACGAAAGCTACAATATTAAAAAAGCA ACAACAACAGATTAGATCTTTGATTCCTTATTTTGCTCTTCTGCTGGTGT TCCATATTTTGGACCCTCATGGTGATTTGGGCCCCTCTCCACATCTGCTT GGAATCTGCGCGTGACCTCAAAACTACGAAGGCCCACAGTGACATAAACC CTAGGAACACCAGAAGAAAGTTTAATATTTAGGAAGTAAATGTTGATATT CTTTTTCTGCAGGAGCGCTAGCTCAGTTCACGTGCCCGGCGGACCACGTT CCGCCCTACCCGCTCTTCTGCCCACAGCCGGGAGACCCGCCCAACGCCAC CGCCTGCTGCTACGACTCTGGCCGGATACCTCAGACGTACTGCTGTAACC CTGGTGACATCCTCGCGGGCCTGGCGTAAGTCTACATTTTTATCTATTTA CAGGTTTGCGGTAGAAAAACCTGTGCTATTTTTGCTGGCCGCCGCCATCA TGTTTGCTTGTAGACGCCATTTTGTTTCTTTGTTTTTATCTATTATTTGT TTATTGCTTTGTTTGAAATATACAAACATGAAGCAGACAAGGTTGCCCAA CTACTAGCTTATTGTGAGATTATGCAATTTCTACACAATCAATAAGTTAC AAGGTAAAAAAAATGAATTTGAAATGTGTACAAATGTGTAAAGGAATAAT TTGATTTTACTTCACCCCAATGTAGTGAAGAATTGTGTGTTTCTGCACTG CAGTTTTTGTATGTACTGCAAGAAGTCACTTGCCAGCAAGACGGTGAAGT CTGCTATCGCTGATTTCTTCATTGTACTTAGAGGATGATTTTCTTTTTTG TCTCTTGCAGGGGTTGGGTCATTGCAGTTATTGTGGTGGTGTTTCTGCTG TTCTTCGGGAGTATCCTGATGTGCATCTGCTGTTGCTGTAGCTGCTGTCT CCTCGCCCAACGTCGCCAACAGTCACAATACGTCGTCATCACTCCGTAA

Coding sequence (CDS) from alignment at Sc0000017:3025252..3027150-

>transcript:BL95287_evm1 ID=transcript:BL95287_evm1|Name=transcript:BL95287_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=936bp|location=Sequence derived from alignment at Sc0000017:3025252..3027150- (Branchiostoma lanceolatum)
ATGATGTCCGGAGCGCTAGCTCAGTTCACGTGCCCGGCGGACCACGTTCC
GCCCTACCCGCTCTTCTGCCCACAGCCGGGAGACCCGCCCAACGCCACCG
CCTGCTGCTACGACTCTGGCCGGATACCTCAGACGTACTGCTGTAACCCT
GGTGACATCCTCGCGGGCCTGGCGGGTTGGGTCATTGCAGTTATTGTGGT
GGTGTTTCTGCTGTTCTTCGGGAGTATCCTGATGTGCATCTGCTGTTGCT
GTAGCTGCTGTCTCCTCGCCCAACGTCGCCAACAGTCACAATACGTCGTC
ATCACTCCGTAAATGATGTCCGGAGCGCTAGCTCAGTTCACGTGCCCGGC
GGACCACGTTCCGCCCTACCCGCTCTTCTGCCCACAGCCGGGAGACCCGC
CCAACGCCACCGCCTGCTGCTACGACTCTGGCCGGATACCTCAGACGTAC
TGCTGTAACCCTGGTGACATCCTCGCGGGCCTGGCGGGTTGGGTCATTGC
AGTTATTGTGGTGGTGTTTCTGCTGTTCTTCGGGAGTATCCTGATGTGCA
TCTGCTGTTGCTGTAGCTGCTGTCTCCTCGCCCAACGTCGCCAACAGTCA
CAATACGTCGTCATCACTCCGTAAATGATGTCCGGAGCGCTAGCTCAGTT
CACGTGCCCGGCGGACCACGTTCCGCCCTACCCGCTCTTCTGCCCACAGC
CGGGAGACCCGCCCAACGCCACCGCCTGCTGCTACGACTCTGGCCGGATA
CCTCAGACGTACTGCTGTAACCCTGGTGACATCCTCGCGGGCCTGGCGGG
TTGGGTCATTGCAGTTATTGTGGTGGTGTTTCTGCTGTTCTTCGGGAGTA
TCCTGATGTGCATCTGCTGTTGCTGTAGCTGCTGTCTCCTCGCCCAACGT
CGCCAACAGTCACAATACGTCGTCATCACTCCGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95287gene:BL95287Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95287_evm1-E1BL95287_evm1-E1-1564476830-134837Branchiostoma lanceolatumexon
BL95287_evm1-E2BL95287_evm1-E2-1564476830-134835Branchiostoma lanceolatumexon
BL95287_evm1-E3BL95287_evm1-E3-1564476830-134833Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95287_evm1transcript:BL95287_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000017genomeSc0000017:3025252..3027150 -
Properties
Property NameValue
Transcript idBL95287_evm1
Biotypeprotein_coding