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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL95217_evm1 >transcript:BL95217_evm1-protein ID=transcript:BL95217_evm1-protein|Name=transcript:BL95217_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=501bp
MAGVGLFPFVTMDLQTLLVLLLLFLAAVLLVYRRGRRPNLPPGPWGIPIV
GNLLSLRPSKLLSNMAAWRQQYGDVYSLRALNRVIVVLYGHKAIHDALVK
QPEIFSDRPPLRLMKRDPGLVMAPYGEGWAERRRFALAALRQFGMGRRSA
EGRIQEEATALCTAIRSLNGAPTDISHLLGNAVSNIICSMSFGNRFEYDD
EEFKRISHAFSCLVGPNNRTMLALFRQIVMPYVRKLPMMANYREHGIKMN
DYIIDFIMKSAEEHKTIFDKSDIRDIIDVFLSEGSSEKGNGVNEEALGTI
IRDLFIAGSETTATTLKWGLLYTALNPDVQTKVQEEINREFGTDTPPWSE
RGRLPYTEATIMEIQRVRPIAPLNVPHGTTCATTLYGYDIPAGTYIIPSL
WSAMMDPEVTPEPEKFRPERFLDDEGKVVKPEWFLPFSTGRRRCLGEQLA
KMELFLFYTSLLQHFTFSLPDGAPAPPMDGSLGFVLAPTPYDVCAVPRHN
P Run BLAST on NCBI mRNA from alignment at Sc0000012:345094..347682- Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL95217_evm1 ID=transcript:BL95217_evm1|Name=transcript:BL95217_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2589bp|location=Sequence derived from alignment at Sc0000012:345094..347682- (Branchiostoma lanceolatum)
ATGGCGGGTGTAGGTTTGTTTCCCTTCGTGACAATGGATCTGCAAACACT
CTTGGTCCTCCTCCTGTTGTTCCTGGCGGCAGTCCTCCTCGTGTATCGGA
GGGGACGTCGACCAAACCTTCCCCCCGGACCCTGGGGTATTCCTATTGTG
GGGAATCTTCTAAGCCTACGGCCCAGCAAACTGCTGTCCAACATGGCGGC
CTGGCGACAGCAGTACGGAGATGTGTACAGTTTGAGGGCCTTGAATCGGG
TCATTGTTGTGCTGTACGGGTGAGTAAAATGTTTTATTAAACTACACTAG
TCTAGTTTAACGCAGTGCCAGTGCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGAAGGTGAGAGAGAGAGATAGTTTATATGTGTGTGTGT
GTACTAGTATGTGTGTGTGTGTGTGTGTCTGTACGTGACTGACTGGCGAT
GTACACTGTTGTTTTCTTTAATGTTCCATAATGACAATAGTTCCCATCTC
TTGCATAGCTTGGTGGAGCAACGAAAACAACTGTTGCATTGTTGTCCTTT
TATGTAGACACAAGGCGATCCATGATGCTCTTGTGAAACAGCCGGAGATA
TTCTCAGACCGACCGCCATTGAGGCTCATGAAACGCGACCCTGGTACGAC
TACGCTATATGTTTTGTGGATAGCATCCATACACTGCTGTGACATAGACA
TATCAGTAATACCTTGCCCTGGTCAAGAAAATCGTTTTCAAGCCACAATT
GTTGTTTGATTTCCCAGACGTGATTAGCATTAGCAGCAGAAATAATTTGC
TTTATATTCTAGAAGTGTTCTTAAAAACACTTTATCAAGTTGTCCTACCC
TGTTATTATGTACATATTAGGTACAGGTGTTGCGCTGCTTCTTTTGTTTC
AAACAACATAATGCATCTATCAACTACTGCTGTACACATTGACTAAAGCA
CCGCTGTATTGGCCAAACATTCTGCATAAGCTATATATGTGTGAACTACA
AGTAAAAAAGAGGGTGAGATTGGCAATAAAAAGCATATCTTTTTTTTTTA
ACTACAGGGTTGGTCATGGCTCCTTACGGGGAAGGTTGGGCCGAGAGGCG
CCGGTTCGCCCTGGCAGCCCTCCGACAGTTCGGCATGGGAAGACGCAGTG
CGGAGGGAAGGATTCAGGAAGAGGCGACGGCTTTGTGCACTGCCATAAGG
TCTCTTAATGGCGCACCGACGGACATATCCCACCTTCTAGGAAACGCGGT
CTCAAACATCATCTGCTCCATGTCGTTCGGCAACCGCTTCGAGTACGACG
ACGAAGAGTTTAAGCGCATTTCTCACGCGTTTTCCTGCCTTGTCGGCCCG
AACAACAGAACCATGCTTGCCTTGTTTCGACAAATTGTCATGCCGTACGT
GAGGAAGCTGCCCATGATGGCCAACTATCGAGAGCATGGTATAAAAATGA
ACGATTACATCATAGACTTTATCATGAAGAGTGCAGAAGAACACAAGACA
ATTTTCGACAAGTCTGACATCAGAGATATCATCGATGTCTTCTTAAGCGA
AGGTAGTAGTGAGAAGGGCAATGGTGTGAATGAAGAGGCGCTTGGCACTA
TCATCAGAGATCTCTTCATTGCTGGTTCCGAAACAACGGCGACAACTTTA
AAGTGGGGACTTCTCTACACTGCTCTAAACCCAGACGTTCAGACCAAGGT
ACAAGAAGAAATCAACCGCGAGTTTGGGACTGATACCCCGCCGTGGTCGG
AGCGCGGAAGACTGCCGTACACCGAGGCGACCATCATGGAAATCCAGCGG
GTACGCCCGATTGCGCCTCTGAATGTGCCCCACGGGACCACCTGCGCCAC
CACGCTGTACGGGTACGACATCCCTGCTGGCACGTACATCATACCCAGTC
TGTGGTCGGCCATGATGGACCCGGAAGTGACGCCGGAACCCGAGAAGTTC
CGACCAGAAAGGTTCTTGGACGACGAAGGAAAGGTGGTCAAGCCGGAATG
GTTTTTACCTTTTTCCACAGGTACATGTTTAAGTTATTATGTTTCTTTTC
TTCAGATTTCCCTAACTTATCAACGTTAGGGCCGATTAGGGAAATATTTT
CTTCAATATTAAATGTGTTCTCGTTCCCTATTTATTCCCGTATCGGTGTA
GGTCGGCGACGGTGTTTGGGAGAACAACTTGCCAAAATGGAACTGTTCCT
TTTCTACACCAGCCTACTGCAGCACTTCACCTTCAGTCTACCAGATGGCG
CCCCTGCACCGCCTATGGACGGCAGTCTTGGCTTTGTCTTGGCTCCAACA
CCGTATGACGTATGCGCCGTTCCCAGGCACAACCCATAA Coding sequence (CDS) from alignment at Sc0000012:345094..347682- >transcript:BL95217_evm1 ID=transcript:BL95217_evm1|Name=transcript:BL95217_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=6024bp|location=Sequence derived from alignment at Sc0000012:345094..347682- (Branchiostoma lanceolatum)
ATGGCGGGTGTAGGTTTGTTTCCCTTCGTGACAATGGATCTGCAAACACT
CTTGGTCCTCCTCCTGTTGTTCCTGGCGGCAGTCCTCCTCGTGTATCGGA
GGGGACGTCGACCAAACCTTCCCCCCGGACCCTGGGGTATTCCTATTGTG
GGGAATCTTCTAAGCCTACGGCCCAGCAAACTGCTGTCCAACATGGCGGC
CTGGCGACAGCAGTACGGAGATGTGTACAGTTTGAGGGCCTTGAATCGGG
TCATTGTTGTGCTGTACGGACACAAGGCGATCCATGATGCTCTTGTGAAA
CAGCCGGAGATATTCTCAGACCGACCGCCATTGAGGCTCATGAAACGCGA
CCCTGGGTTGGTCATGGCTCCTTACGGGGAAGGTTGGGCCGAGAGGCGCC
GGTTCGCCCTGGCAGCCCTCCGACAGTTCGGCATGGGAAGACGCAGTGCG
GAGGGAAGGATTCAGGAAGAGGCGACGGCTTTGTGCACTGCCATAAGGTC
TCTTAATGGCGCACCGACGGACATATCCCACCTTCTAGGAAACGCGGTCT
CAAACATCATCTGCTCCATGTCGTTCGGCAACCGCTTCGAGTACGACGAC
GAAGAGTTTAAGCGCATTTCTCACGCGTTTTCCTGCCTTGTCGGCCCGAA
CAACAGAACCATGCTTGCCTTGTTTCGACAAATTGTCATGCCGTACGTGA
GGAAGCTGCCCATGATGGCCAACTATCGAGAGCATGGTATAAAAATGAAC
GATTACATCATAGACTTTATCATGAAGAGTGCAGAAGAACACAAGACAAT
TTTCGACAAGTCTGACATCAGAGATATCATCGATGTCTTCTTAAGCGAAG
GTAGTAGTGAGAAGGGCAATGGTGTGAATGAAGAGGCGCTTGGCACTATC
ATCAGAGATCTCTTCATTGCTGGTTCCGAAACAACGGCGACAACTTTAAA
GTGGGGACTTCTCTACACTGCTCTAAACCCAGACGTTCAGACCAAGGTAC
AAGAAGAAATCAACCGCGAGTTTGGGACTGATACCCCGCCGTGGTCGGAG
CGCGGAAGACTGCCGTACACCGAGGCGACCATCATGGAAATCCAGCGGGT
ACGCCCGATTGCGCCTCTGAATGTGCCCCACGGGACCACCTGCGCCACCA
CGCTGTACGGGTACGACATCCCTGCTGGCACGTACATCATACCCAGTCTG
TGGTCGGCCATGATGGACCCGGAAGTGACGCCGGAACCCGAGAAGTTCCG
ACCAGAAAGGTTCTTGGACGACGAAGGAAAGGTGGTCAAGCCGGAATGGT
TTTTACCTTTTTCCACAGGTCGGCGACGGTGTTTGGGAGAACAACTTGCC
AAAATGGAACTGTTCCTTTTCTACACCAGCCTACTGCAGCACTTCACCTT
CAGTCTACCAGATGGCGCCCCTGCACCGCCTATGGACGGCAGTCTTGGCT
TTGTCTTGGCTCCAACACCGTATGACGTATGCGCCGTTCCCAGGCACAAC
CCATAAATGGCGGGTGTAGGTTTGTTTCCCTTCGTGACAATGGATCTGCA
AACACTCTTGGTCCTCCTCCTGTTGTTCCTGGCGGCAGTCCTCCTCGTGT
ATCGGAGGGGACGTCGACCAAACCTTCCCCCCGGACCCTGGGGTATTCCT
ATTGTGGGGAATCTTCTAAGCCTACGGCCCAGCAAACTGCTGTCCAACAT
GGCGGCCTGGCGACAGCAGTACGGAGATGTGTACAGTTTGAGGGCCTTGA
ATCGGGTCATTGTTGTGCTGTACGGACACAAGGCGATCCATGATGCTCTT
GTGAAACAGCCGGAGATATTCTCAGACCGACCGCCATTGAGGCTCATGAA
ACGCGACCCTGGGTTGGTCATGGCTCCTTACGGGGAAGGTTGGGCCGAGA
GGCGCCGGTTCGCCCTGGCAGCCCTCCGACAGTTCGGCATGGGAAGACGC
AGTGCGGAGGGAAGGATTCAGGAAGAGGCGACGGCTTTGTGCACTGCCAT
AAGGTCTCTTAATGGCGCACCGACGGACATATCCCACCTTCTAGGAAACG
CGGTCTCAAACATCATCTGCTCCATGTCGTTCGGCAACCGCTTCGAGTAC
GACGACGAAGAGTTTAAGCGCATTTCTCACGCGTTTTCCTGCCTTGTCGG
CCCGAACAACAGAACCATGCTTGCCTTGTTTCGACAAATTGTCATGCCGT
ACGTGAGGAAGCTGCCCATGATGGCCAACTATCGAGAGCATGGTATAAAA
ATGAACGATTACATCATAGACTTTATCATGAAGAGTGCAGAAGAACACAA
GACAATTTTCGACAAGTCTGACATCAGAGATATCATCGATGTCTTCTTAA
GCGAAGGTAGTAGTGAGAAGGGCAATGGTGTGAATGAAGAGGCGCTTGGC
ACTATCATCAGAGATCTCTTCATTGCTGGTTCCGAAACAACGGCGACAAC
TTTAAAGTGGGGACTTCTCTACACTGCTCTAAACCCAGACGTTCAGACCA
AGGTACAAGAAGAAATCAACCGCGAGTTTGGGACTGATACCCCGCCGTGG
TCGGAGCGCGGAAGACTGCCGTACACCGAGGCGACCATCATGGAAATCCA
GCGGGTACGCCCGATTGCGCCTCTGAATGTGCCCCACGGGACCACCTGCG
CCACCACGCTGTACGGGTACGACATCCCTGCTGGCACGTACATCATACCC
AGTCTGTGGTCGGCCATGATGGACCCGGAAGTGACGCCGGAACCCGAGAA
GTTCCGACCAGAAAGGTTCTTGGACGACGAAGGAAAGGTGGTCAAGCCGG
AATGGTTTTTACCTTTTTCCACAGGTCGGCGACGGTGTTTGGGAGAACAA
CTTGCCAAAATGGAACTGTTCCTTTTCTACACCAGCCTACTGCAGCACTT
CACCTTCAGTCTACCAGATGGCGCCCCTGCACCGCCTATGGACGGCAGTC
TTGGCTTTGTCTTGGCTCCAACACCGTATGACGTATGCGCCGTTCCCAGG
CACAACCCATAAATGGCGGGTGTAGGTTTGTTTCCCTTCGTGACAATGGA
TCTGCAAACACTCTTGGTCCTCCTCCTGTTGTTCCTGGCGGCAGTCCTCC
TCGTGTATCGGAGGGGACGTCGACCAAACCTTCCCCCCGGACCCTGGGGT
ATTCCTATTGTGGGGAATCTTCTAAGCCTACGGCCCAGCAAACTGCTGTC
CAACATGGCGGCCTGGCGACAGCAGTACGGAGATGTGTACAGTTTGAGGG
CCTTGAATCGGGTCATTGTTGTGCTGTACGGACACAAGGCGATCCATGAT
GCTCTTGTGAAACAGCCGGAGATATTCTCAGACCGACCGCCATTGAGGCT
CATGAAACGCGACCCTGGGTTGGTCATGGCTCCTTACGGGGAAGGTTGGG
CCGAGAGGCGCCGGTTCGCCCTGGCAGCCCTCCGACAGTTCGGCATGGGA
AGACGCAGTGCGGAGGGAAGGATTCAGGAAGAGGCGACGGCTTTGTGCAC
TGCCATAAGGTCTCTTAATGGCGCACCGACGGACATATCCCACCTTCTAG
GAAACGCGGTCTCAAACATCATCTGCTCCATGTCGTTCGGCAACCGCTTC
GAGTACGACGACGAAGAGTTTAAGCGCATTTCTCACGCGTTTTCCTGCCT
TGTCGGCCCGAACAACAGAACCATGCTTGCCTTGTTTCGACAAATTGTCA
TGCCGTACGTGAGGAAGCTGCCCATGATGGCCAACTATCGAGAGCATGGT
ATAAAAATGAACGATTACATCATAGACTTTATCATGAAGAGTGCAGAAGA
ACACAAGACAATTTTCGACAAGTCTGACATCAGAGATATCATCGATGTCT
TCTTAAGCGAAGGTAGTAGTGAGAAGGGCAATGGTGTGAATGAAGAGGCG
CTTGGCACTATCATCAGAGATCTCTTCATTGCTGGTTCCGAAACAACGGC
GACAACTTTAAAGTGGGGACTTCTCTACACTGCTCTAAACCCAGACGTTC
AGACCAAGGTACAAGAAGAAATCAACCGCGAGTTTGGGACTGATACCCCG
CCGTGGTCGGAGCGCGGAAGACTGCCGTACACCGAGGCGACCATCATGGA
AATCCAGCGGGTACGCCCGATTGCGCCTCTGAATGTGCCCCACGGGACCA
CCTGCGCCACCACGCTGTACGGGTACGACATCCCTGCTGGCACGTACATC
ATACCCAGTCTGTGGTCGGCCATGATGGACCCGGAAGTGACGCCGGAACC
CGAGAAGTTCCGACCAGAAAGGTTCTTGGACGACGAAGGAAAGGTGGTCA
AGCCGGAATGGTTTTTACCTTTTTCCACAGGTCGGCGACGGTGTTTGGGA
GAACAACTTGCCAAAATGGAACTGTTCCTTTTCTACACCAGCCTACTGCA
GCACTTCACCTTCAGTCTACCAGATGGCGCCCCTGCACCGCCTATGGACG
GCAGTCTTGGCTTTGTCTTGGCTCCAACACCGTATGACGTATGCGCCGTT
CCCAGGCACAACCCATAAATGGCGGGTGTAGGTTTGTTTCCCTTCGTGAC
AATGGATCTGCAAACACTCTTGGTCCTCCTCCTGTTGTTCCTGGCGGCAG
TCCTCCTCGTGTATCGGAGGGGACGTCGACCAAACCTTCCCCCCGGACCC
TGGGGTATTCCTATTGTGGGGAATCTTCTAAGCCTACGGCCCAGCAAACT
GCTGTCCAACATGGCGGCCTGGCGACAGCAGTACGGAGATGTGTACAGTT
TGAGGGCCTTGAATCGGGTCATTGTTGTGCTGTACGGACACAAGGCGATC
CATGATGCTCTTGTGAAACAGCCGGAGATATTCTCAGACCGACCGCCATT
GAGGCTCATGAAACGCGACCCTGGGTTGGTCATGGCTCCTTACGGGGAAG
GTTGGGCCGAGAGGCGCCGGTTCGCCCTGGCAGCCCTCCGACAGTTCGGC
ATGGGAAGACGCAGTGCGGAGGGAAGGATTCAGGAAGAGGCGACGGCTTT
GTGCACTGCCATAAGGTCTCTTAATGGCGCACCGACGGACATATCCCACC
TTCTAGGAAACGCGGTCTCAAACATCATCTGCTCCATGTCGTTCGGCAAC
CGCTTCGAGTACGACGACGAAGAGTTTAAGCGCATTTCTCACGCGTTTTC
CTGCCTTGTCGGCCCGAACAACAGAACCATGCTTGCCTTGTTTCGACAAA
TTGTCATGCCGTACGTGAGGAAGCTGCCCATGATGGCCAACTATCGAGAG
CATGGTATAAAAATGAACGATTACATCATAGACTTTATCATGAAGAGTGC
AGAAGAACACAAGACAATTTTCGACAAGTCTGACATCAGAGATATCATCG
ATGTCTTCTTAAGCGAAGGTAGTAGTGAGAAGGGCAATGGTGTGAATGAA
GAGGCGCTTGGCACTATCATCAGAGATCTCTTCATTGCTGGTTCCGAAAC
AACGGCGACAACTTTAAAGTGGGGACTTCTCTACACTGCTCTAAACCCAG
ACGTTCAGACCAAGGTACAAGAAGAAATCAACCGCGAGTTTGGGACTGAT
ACCCCGCCGTGGTCGGAGCGCGGAAGACTGCCGTACACCGAGGCGACCAT
CATGGAAATCCAGCGGGTACGCCCGATTGCGCCTCTGAATGTGCCCCACG
GGACCACCTGCGCCACCACGCTGTACGGGTACGACATCCCTGCTGGCACG
TACATCATACCCAGTCTGTGGTCGGCCATGATGGACCCGGAAGTGACGCC
GGAACCCGAGAAGTTCCGACCAGAAAGGTTCTTGGACGACGAAGGAAAGG
TGGTCAAGCCGGAATGGTTTTTACCTTTTTCCACAGGTCGGCGACGGTGT
TTGGGAGAACAACTTGCCAAAATGGAACTGTTCCTTTTCTACACCAGCCT
ACTGCAGCACTTCACCTTCAGTCTACCAGATGGCGCCCCTGCACCGCCTA
TGGACGGCAGTCTTGGCTTTGTCTTGGCTCCAACACCGTATGACGTATGC
GCCGTTCCCAGGCACAACCCATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000012 | genome | Sc0000012:345094..347682 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL95217_evm1 |
| Biotype | protein_coding |
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