transcript:BL95166_evm2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95166_evm2
Unique Nametranscript:BL95166_evm2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95166_evm2

>transcript:BL95166_evm2-protein ID=transcript:BL95166_evm2-protein|Name=transcript:BL95166_evm2|organism=Branchiostoma lanceolatum|type=polypeptide|length=344bp
MMASTEDGYQESGEESSCAETDNGSESGEDESESGEKQKRLSCPHCKYET
DHKRRMTKHMKSHRTYQCDQCDYSTARNESLKRHMAVHTGERPYHCGHCD
FSSAWKDGLFSHSGSLKQHLLAVHTSERPFHCGYCDFSAARKGGLFVHVR
TMHGAVTMSDLKKHMANHTGEKPFHCELCDFSTVHKNNMKRHMATHTGEK
PLKCELCDYSTAQSSHLKRHMATHTGEKPYECGICGYATVRISSLKDHMT
KHTGEKPYQCEECDYFTTSKSSLAKHMARHTGEKPYMCGDCGYVGATMDD
LRQHMATHVKPHKCDQCDYSAAQKAHLRMHMAKHAEENNESVTA
Run BLAST on NCBI

mRNA from alignment at Sc0000008:5131540..5133465+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95166_evm2 ID=transcript:BL95166_evm2|Name=transcript:BL95166_evm2|organism=Branchiostoma lanceolatum|type=mRNA|length=1926bp|location=Sequence derived from alignment at Sc0000008:5131540..5133465+ (Branchiostoma lanceolatum)
ATGATGGCATCGACTGAAGATGGATATCAGGAGTCAGGAGAGGAGTCCAG
CTGTGCAGAAACTGACAACGGAAGTGAAAGTGGAGAAGATGAAAGTGAAA
GTGGGGAGAAGCAGAAGAGACTCAGTTGTCCGCACTGTAAGTATGAAACG
GATCACAAGAGGAGGATGACGAAACACATGAAGTCCCACAGAACATACCA
GTGCGACCAGTGCGACTATTCCACAGCACGAAACGAGTCTCTGAAACGCC
ACATGGCTGTACACACCGGTGAGAGACCCTACCACTGCGGCCACTGTGAC
TTTTCATCGGCATGGAAAGACGGTCTTTTCAGCCATGTAAGGGCAGTACA
CAGCGGTGAGAGACCTTATAAGTGTACTTACTGTGATTATTCTACTGCAC
ATAACGCTCTTCTGAAGAACCACATCATGGCCAAACACACTAACACTAAG
CCACACAAGTGCACGCTGTGCGACTATTCTGCAGTCACCAAAAAGAGTTT
GAAGTTTCACATGGCTACCCACACTGGGGAGAAACCGTTCAAGTGTGAGA
TTTGCCCTTACGCCACCCATCGAAAGACAACTTTAAAAATGCACGTGGCC
ACCCACAGTGCCGACAAACCATACAAGTGTCAAGTCTGTGACTATTCCGC
AGTCCAAAAGACAGCTTTAAAAAGACACATGCTCAAACACACAGAACCTA
AAATTAAGATTAAAAAGGAGCCAAAGAAACACAGCTGTCTGTATTGTGAG
TATGAAACTATCAATAAGCCTGCGATGACAAGACATATCAGGACCCACAC
TGGTGAGAAACCGTACAAGTGTGACCAGTGCGACTATTCTGCTGCACAGA
GTGGTTCCCTGAAACAGCACCTGCTGGCTGTGCACACCAGTGAGAGACCT
TTCCACTGTGGCTACTGTGACTTCTCTGCAGCAAGGAAAGGCGGTCTTTT
CGTGCACGTCCGGACAATGCATGGCGGTGAGAGACCTTATCAGTGCACGT
TTTGTGAGTATTCAGCACAACAGTCGGGTCATTTGAAAGAGCACATCATG
TCTAAACACAGCAACGACAGGCCGCACAAATGCACCGAGTGCAGCTTTTC
CTCAGTTAGCAAAAAAGGTTTAAAGCTTCACATGACTACCCACACTGGTG
AGAAACCCTACAACTGTGAGTTGTGCAGTTATGCCTGTCGTCAAAAGGGT
CTGTTAAAGTTACACATGGCTAAACACACCGGGGAGAAACCTTATAAATG
TAAACTTTGTGATTATTCTACTGCAGCAAGTTCGCGTTTAAAATCTCACG
CGGCAACTCATACTGGTGAGAAGCCATTTAAATGTGAACTGTGTGATTAT
TCAGCCGTTACTATGTCTGATTTGAAAAAGCACATGGCCAACCACACTGG
GGAGAAACCCTTCCACTGTGAACTCTGTGACTTTTCCACCGTGCACAAAA
ACAATATGAAGCGGCACATGGCCACGCACACCGGTGAGAAACCGCTCAAA
TGTGAACTTTGTGACTATTCTACGGCACAGAGCAGCCATTTGAAGCGACA
CATGGCCACGCACACTGGCGAGAAGCCGTACGAATGTGGCATTTGTGGCT
ATGCGACGGTACGAATATCCTCTTTAAAAGACCACATGACGAAACACACT
GGTGAGAAGCCTTACCAATGTGAGGAATGTGATTATTTCACAACCAGCAA
ATCAAGCTTAGCGAAGCACATGGCTAGACACACGGGTGAGAAGCCGTACA
TGTGCGGTGATTGTGGTTATGTGGGAGCAACGATGGACGACCTGAGGCAG
CACATGGCCACGCACGTGAAGCCTCACAAATGTGACCAGTGCGACTACTC
TGCAGCACAGAAAGCTCATTTGAGGATGCACATGGCCAAACATGCCGAAG
AAAATAACGAGAGTGTGACTGCTTGA

Coding sequence (CDS) from alignment at Sc0000008:5131540..5133465+

>transcript:BL95166_evm2 ID=transcript:BL95166_evm2|Name=transcript:BL95166_evm2|organism=Branchiostoma lanceolatum|type=CDS|length=3105bp|location=Sequence derived from alignment at Sc0000008:5131540..5133465+ (Branchiostoma lanceolatum)
ATGATGGCATCGACTGAAGATGGATATCAGGAGTCAGGAGAGGAGTCCAG
CTGTGCAGAAACTGACAACGGAAGTGAAAGTGGAGAAGATGAAAGTGAAA
GTGGGGAGAAGCAGAAGAGACTCAGTTGTCCGCACTGTAAGTATGAAACG
GATCACAAGAGGAGGATGACGAAACACATGAAGTCCCACAGAACATACCA
GTGCGACCAGTGCGACTATTCCACAGCACGAAACGAGTCTCTGAAACGCC
ACATGGCTGTACACACCGGTGAGAGACCCTACCACTGCGGCCACTGTGAC
TTTTCATCGGCATGGAAAGACGGTCTTTTCAGCCATAGTGGTTCCCTGAA
ACAGCACCTGCTGGCTGTGCACACCAGTGAGAGACCTTTCCACTGTGGCT
ACTGTGACTTCTCTGCAGCAAGGAAAGGCGGTCTTTTCGTGCACGTCCGG
ACAATGCATGGCGCCGTTACTATGTCTGATTTGAAAAAGCACATGGCCAA
CCACACTGGGGAGAAACCCTTCCACTGTGAACTCTGTGACTTTTCCACCG
TGCACAAAAACAATATGAAGCGGCACATGGCCACGCACACCGGTGAGAAA
CCGCTCAAATGTGAACTTTGTGACTATTCTACGGCACAGAGCAGCCATTT
GAAGCGACACATGGCCACGCACACTGGCGAGAAGCCGTACGAATGTGGCA
TTTGTGGCTATGCGACGGTACGAATATCCTCTTTAAAAGACCACATGACG
AAACACACTGGTGAGAAGCCTTACCAATGTGAGGAATGTGATTATTTCAC
AACCAGCAAATCAAGCTTAGCGAAGCACATGGCTAGACACACGGGTGAGA
AGCCGTACATGTGCGGTGATTGTGGTTATGTGGGAGCAACGATGGACGAC
CTGAGGCAGCACATGGCCACGCACGTGAAGCCTCACAAATGTGACCAGTG
CGACTACTCTGCAGCACAGAAAGCTCATTTGAGGATGCACATGGCCAAAC
ATGCCGAAGAAAATAACGAGAGTGTGACTGCTTGAATGATGGCATCGACT
GAAGATGGATATCAGGAGTCAGGAGAGGAGTCCAGCTGTGCAGAAACTGA
CAACGGAAGTGAAAGTGGAGAAGATGAAAGTGAAAGTGGGGAGAAGCAGA
AGAGACTCAGTTGTCCGCACTGTAAGTATGAAACGGATCACAAGAGGAGG
ATGACGAAACACATGAAGTCCCACAGAACATACCAGTGCGACCAGTGCGA
CTATTCCACAGCACGAAACGAGTCTCTGAAACGCCACATGGCTGTACACA
CCGGTGAGAGACCCTACCACTGCGGCCACTGTGACTTTTCATCGGCATGG
AAAGACGGTCTTTTCAGCCATAGTGGTTCCCTGAAACAGCACCTGCTGGC
TGTGCACACCAGTGAGAGACCTTTCCACTGTGGCTACTGTGACTTCTCTG
CAGCAAGGAAAGGCGGTCTTTTCGTGCACGTCCGGACAATGCATGGCGCC
GTTACTATGTCTGATTTGAAAAAGCACATGGCCAACCACACTGGGGAGAA
ACCCTTCCACTGTGAACTCTGTGACTTTTCCACCGTGCACAAAAACAATA
TGAAGCGGCACATGGCCACGCACACCGGTGAGAAACCGCTCAAATGTGAA
CTTTGTGACTATTCTACGGCACAGAGCAGCCATTTGAAGCGACACATGGC
CACGCACACTGGCGAGAAGCCGTACGAATGTGGCATTTGTGGCTATGCGA
CGGTACGAATATCCTCTTTAAAAGACCACATGACGAAACACACTGGTGAG
AAGCCTTACCAATGTGAGGAATGTGATTATTTCACAACCAGCAAATCAAG
CTTAGCGAAGCACATGGCTAGACACACGGGTGAGAAGCCGTACATGTGCG
GTGATTGTGGTTATGTGGGAGCAACGATGGACGACCTGAGGCAGCACATG
GCCACGCACGTGAAGCCTCACAAATGTGACCAGTGCGACTACTCTGCAGC
ACAGAAAGCTCATTTGAGGATGCACATGGCCAAACATGCCGAAGAAAATA
ACGAGAGTGTGACTGCTTGAATGATGGCATCGACTGAAGATGGATATCAG
GAGTCAGGAGAGGAGTCCAGCTGTGCAGAAACTGACAACGGAAGTGAAAG
TGGAGAAGATGAAAGTGAAAGTGGGGAGAAGCAGAAGAGACTCAGTTGTC
CGCACTGTAAGTATGAAACGGATCACAAGAGGAGGATGACGAAACACATG
AAGTCCCACAGAACATACCAGTGCGACCAGTGCGACTATTCCACAGCACG
AAACGAGTCTCTGAAACGCCACATGGCTGTACACACCGGTGAGAGACCCT
ACCACTGCGGCCACTGTGACTTTTCATCGGCATGGAAAGACGGTCTTTTC
AGCCATAGTGGTTCCCTGAAACAGCACCTGCTGGCTGTGCACACCAGTGA
GAGACCTTTCCACTGTGGCTACTGTGACTTCTCTGCAGCAAGGAAAGGCG
GTCTTTTCGTGCACGTCCGGACAATGCATGGCGCCGTTACTATGTCTGAT
TTGAAAAAGCACATGGCCAACCACACTGGGGAGAAACCCTTCCACTGTGA
ACTCTGTGACTTTTCCACCGTGCACAAAAACAATATGAAGCGGCACATGG
CCACGCACACCGGTGAGAAACCGCTCAAATGTGAACTTTGTGACTATTCT
ACGGCACAGAGCAGCCATTTGAAGCGACACATGGCCACGCACACTGGCGA
GAAGCCGTACGAATGTGGCATTTGTGGCTATGCGACGGTACGAATATCCT
CTTTAAAAGACCACATGACGAAACACACTGGTGAGAAGCCTTACCAATGT
GAGGAATGTGATTATTTCACAACCAGCAAATCAAGCTTAGCGAAGCACAT
GGCTAGACACACGGGTGAGAAGCCGTACATGTGCGGTGATTGTGGTTATG
TGGGAGCAACGATGGACGACCTGAGGCAGCACATGGCCACGCACGTGAAG
CCTCACAAATGTGACCAGTGCGACTACTCTGCAGCACAGAAAGCTCATTT
GAGGATGCACATGGCCAAACATGCCGAAGAAAATAACGAGAGTGTGACTG
CTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95166gene:BL95166Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95166_evm2-E1BL95166_evm2-E1-1564476830-86608Branchiostoma lanceolatumexon
BL95166_evm2-E2BL95166_evm2-E2-1564476830-86610Branchiostoma lanceolatumexon
BL95166_evm2-E3BL95166_evm2-E3-1564476830-86612Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95166_evm2transcript:BL95166_evm2-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000008genomeSc0000008:5131540..5133465 +
Properties
Property NameValue
Transcript idBL95166_evm2
Biotypeprotein_coding