transcript:BL95156_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95156_evm1
Unique Nametranscript:BL95156_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95156_evm1

>transcript:BL95156_evm1-protein ID=transcript:BL95156_evm1-protein|Name=transcript:BL95156_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=218bp
MADENNTQLQMANDNNAQLQVADDKHVQLEVHPEPSLPALDVKSTXHPEP
GLPALDVKSTEVTTSDTEQDSGTYDGVENASVSSDDTTNSDLYTGSDLED
QPAAEPESAYEDVQVYEEVTVAGEEEAKTEETLTEKQDDKETKEKKKKKT
PGCTGNLFSCMKKPGSKKKKETAIKEEAKKDAEEQVEEKKEETQAEEKVD
EGITMKDDGYVTIINGEA
Run BLAST on NCBI

mRNA from alignment at Sc0000008:2530828..2533232+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95156_evm1 ID=transcript:BL95156_evm1|Name=transcript:BL95156_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=2405bp|location=Sequence derived from alignment at Sc0000008:2530828..2533232+ (Branchiostoma lanceolatum)
ATGGCAGACGAAAATAACACCCAACTCCAAATGGCAAACGACAACAACGC
CCAACTCCAAGTTGCAGACGACAAACACGTCCAACTTGAAGTCCACCCCG
AGCCCAGTCTTCCAGCACTAGATGTGAAGTCTACGGANCACCCCGAGCCC
GGTCTTCCAGCACTAGATGTGAAGTCAACAGAAGTGACTACCAGCGATAC
CGAGCAAGATTCGGGCACGTACGATGGCGTGGAAAACGCGAGCGTTAGTT
CTGACGATACAACCAATTCGGACCTCTACACAGGCTCGGGTACGTATATA
CTCGGTGAAAACAAGTCTTTCTCACCTCCTAAATCATCATTTACCAATGC
ATTTATAGTTCCTAGCCAAGTACATGTAAGAGGAAAGGAATCAAGTGTTC
AAATGCATTTATATGCTCGTATGCAGAGATGCATTTATAGTCAAGCATAT
GTAAGAAATCAAATGTTCAAGAGCACGCGAACGGATGGCCGAAGACCAGT
TTTTTTCCAATTATATCTTAGCACATGATTGCCTAGTTGAGACCAAATAT
GAGTGACTGCATGTGTAGTTGCAGACACTTAGTACCCAAACCTTAAATGC
AGTAGCTGCATTTCATCCTTAGAGGCACTGAAATGATGGATCTAACGTTG
ACTTTATACATCACTCATGTTAATCTTCTGTACATGTATATTCTGTATAT
GCTGTTTTCCTGTGTAGTTTTGTGCAGTGTTTGTTAATAAGGACCGCAGG
AAGAATAGCTGCGATGGACATTAGTAAACTCAAATGAATTATTGTTGAAA
TGAACAGCAAATGTTGTTCTTGAACAAAAGACAGAGATGTTCAGTGGATA
TTAAAATGTGTCCTGACTATCACCTCCAGATCTAGAGGACCAGCCAGCTG
CAGAGCCGGAGTCAGCTTATGAAGATGTACAAGTGTATGAGGAAGTTACA
GTAGCAGGGGAAGGTAGGAATGTTGTTGTTGTTCACTTTGTACTGCCTAG
TGGCACACAGGTCAGCAAGTTCACTTGCTGTTTCAGTAACAGGGTATATT
TTTACAGGGATGGGTTACTAGCCCTTCCGTTTTAACGTGCCCAAGGCACC
TCTTCGAACACGGGACCCCCATTTTACGTCCCTTCCGAAAGACGGGTGCA
GCCCCAACCGAAAATCCTTTCCCAGGATTTGAACTGAGGTCTTCAAGTTC
CCAACTAATTGGAACCAGGAGCTCAACTGTGAGACTACCAGTTGAGCTAT
AGGGACATCCCTAGGAAAACTAAGGGCCCCCATTTATCACTATTTCTAGG
TATTCTATCTAATATGATAAAGTGTATGTACTGTAAAAGAGGATTTTTTT
ATGTTTGCAGTTTTCGGCATGAACTCTTGACTGCAAACTTAAAACTACTG
CAAATACTACATTTTCTCCCTTTTGTGAAATCAAATTCCAACGAATTTTT
TTTCCTCCATTTTACAGCATGTCTTACAGGATTACCTGCATGTCTTGCAA
GTATAGTAGTATCTCGTGTGCTTGTGCAACAAGAACTTTGTAAGACATTA
AATCACCAATTGCAACCTGAAGAAACTATTCAAAGCACAAGTTGTATATC
CTTGATATAAAAAGACTCTATTTTTGCACAAAATGTATCATGGGCACATT
TTGTACTGCGATCTTCAAAACTATGATCTACCGGTCCACAGTCAATAGTA
ACTAACTCAATGTTATATTTGAATCCACCTTCTGTAGAAGAGGCTAAAAC
TGAAGAAACACTGACAGAAAAACAAGATGACAAAGAAACTAAGGAGAAGA
AGAAGAAAAAGACACCAGGATGCACAGGTAAGGAACTAAATCATAGAACA
AAGTATCAGTGAGGAAAAGATGGTGCTTAAGTTTTCCGTTCGGTAAATAA
ATTTAAAGAAAAAGCAAATATGTTTTTAGAAGAGTTAACTTATCAAACAA
GGATACACTGCATCAATATTAATGTAGGTATCAGTACTGGTGACTATTCA
GCGAGCTGGGGTTGACTTTGCATAGAATGTTGCAAGAAGAAATTCCCTTT
TGTAACTGTAACTTAAAATCAACTGTGAATAAAGCAGGAAACATATAACA
TTGTATTCCCAGAGTTAAAAATGAGTACATGTATAGTGTGGTCAATGTAT
GTTTTGGATATCATAAGTTTAAAGTCAGGTTTATACATTCAAATGTATTT
TATTTTCACAGGGAACCTATTCAGTTGCATGAAGAAACCAGGATCAAAGA
AGAAAAAAGAGACAGCAATAAAAGAAGAGGCCAAAAAAGATGCTGAAGAG
CAAGTGGAAGAAAAGAAAGAGGAAACACAGGCGGAAGAGAAAGTGGATGA
AGGAATAACAATGAAAGATGATGGGTACGTAACTATTATAAATGGAGAAG
CTTAA

Coding sequence (CDS) from alignment at Sc0000008:2530828..2533232+

>transcript:BL95156_evm1 ID=transcript:BL95156_evm1|Name=transcript:BL95156_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=2628bp|location=Sequence derived from alignment at Sc0000008:2530828..2533232+ (Branchiostoma lanceolatum)
ATGGCAGACGAAAATAACACCCAACTCCAAATGGCAAACGACAACAACGC
CCAACTCCAAGTTGCAGACGACAAACACGTCCAACTTGAAGTCCACCCCG
AGCCCAGTCTTCCAGCACTAGATGTGAAGTCTACGGANCACCCCGAGCCC
GGTCTTCCAGCACTAGATGTGAAGTCAACAGAAGTGACTACCAGCGATAC
CGAGCAAGATTCGGGCACGTACGATGGCGTGGAAAACGCGAGCGTTAGTT
CTGACGATACAACCAATTCGGACCTCTACACAGGCTCGGATCTAGAGGAC
CAGCCAGCTGCAGAGCCGGAGTCAGCTTATGAAGATGTACAAGTGTATGA
GGAAGTTACAGTAGCAGGGGAAGAAGAGGCTAAAACTGAAGAAACACTGA
CAGAAAAACAAGATGACAAAGAAACTAAGGAGAAGAAGAAGAAAAAGACA
CCAGGATGCACAGGGAACCTATTCAGTTGCATGAAGAAACCAGGATCAAA
GAAGAAAAAAGAGACAGCAATAAAAGAAGAGGCCAAAAAAGATGCTGAAG
AGCAAGTGGAAGAAAAGAAAGAGGAAACACAGGCGGAAGAGAAAGTGGAT
GAAGGAATAACAATGAAAGATGATGGGTACGTAACTATTATAAATGGAGA
AGCTTAAATGGCAGACGAAAATAACACCCAACTCCAAATGGCAAACGACA
ACAACGCCCAACTCCAAGTTGCAGACGACAAACACGTCCAACTTGAAGTC
CACCCCGAGCCCAGTCTTCCAGCACTAGATGTGAAGTCTACGGANCACCC
CGAGCCCGGTCTTCCAGCACTAGATGTGAAGTCAACAGAAGTGACTACCA
GCGATACCGAGCAAGATTCGGGCACGTACGATGGCGTGGAAAACGCGAGC
GTTAGTTCTGACGATACAACCAATTCGGACCTCTACACAGGCTCGGATCT
AGAGGACCAGCCAGCTGCAGAGCCGGAGTCAGCTTATGAAGATGTACAAG
TGTATGAGGAAGTTACAGTAGCAGGGGAAGAAGAGGCTAAAACTGAAGAA
ACACTGACAGAAAAACAAGATGACAAAGAAACTAAGGAGAAGAAGAAGAA
AAAGACACCAGGATGCACAGGGAACCTATTCAGTTGCATGAAGAAACCAG
GATCAAAGAAGAAAAAAGAGACAGCAATAAAAGAAGAGGCCAAAAAAGAT
GCTGAAGAGCAAGTGGAAGAAAAGAAAGAGGAAACACAGGCGGAAGAGAA
AGTGGATGAAGGAATAACAATGAAAGATGATGGGTACGTAACTATTATAA
ATGGAGAAGCTTAAATGGCAGACGAAAATAACACCCAACTCCAAATGGCA
AACGACAACAACGCCCAACTCCAAGTTGCAGACGACAAACACGTCCAACT
TGAAGTCCACCCCGAGCCCAGTCTTCCAGCACTAGATGTGAAGTCTACGG
ANCACCCCGAGCCCGGTCTTCCAGCACTAGATGTGAAGTCAACAGAAGTG
ACTACCAGCGATACCGAGCAAGATTCGGGCACGTACGATGGCGTGGAAAA
CGCGAGCGTTAGTTCTGACGATACAACCAATTCGGACCTCTACACAGGCT
CGGATCTAGAGGACCAGCCAGCTGCAGAGCCGGAGTCAGCTTATGAAGAT
GTACAAGTGTATGAGGAAGTTACAGTAGCAGGGGAAGAAGAGGCTAAAAC
TGAAGAAACACTGACAGAAAAACAAGATGACAAAGAAACTAAGGAGAAGA
AGAAGAAAAAGACACCAGGATGCACAGGGAACCTATTCAGTTGCATGAAG
AAACCAGGATCAAAGAAGAAAAAAGAGACAGCAATAAAAGAAGAGGCCAA
AAAAGATGCTGAAGAGCAAGTGGAAGAAAAGAAAGAGGAAACACAGGCGG
AAGAGAAAGTGGATGAAGGAATAACAATGAAAGATGATGGGTACGTAACT
ATTATAAATGGAGAAGCTTAAATGGCAGACGAAAATAACACCCAACTCCA
AATGGCAAACGACAACAACGCCCAACTCCAAGTTGCAGACGACAAACACG
TCCAACTTGAAGTCCACCCCGAGCCCAGTCTTCCAGCACTAGATGTGAAG
TCTACGGANCACCCCGAGCCCGGTCTTCCAGCACTAGATGTGAAGTCAAC
AGAAGTGACTACCAGCGATACCGAGCAAGATTCGGGCACGTACGATGGCG
TGGAAAACGCGAGCGTTAGTTCTGACGATACAACCAATTCGGACCTCTAC
ACAGGCTCGGATCTAGAGGACCAGCCAGCTGCAGAGCCGGAGTCAGCTTA
TGAAGATGTACAAGTGTATGAGGAAGTTACAGTAGCAGGGGAAGAAGAGG
CTAAAACTGAAGAAACACTGACAGAAAAACAAGATGACAAAGAAACTAAG
GAGAAGAAGAAGAAAAAGACACCAGGATGCACAGGGAACCTATTCAGTTG
CATGAAGAAACCAGGATCAAAGAAGAAAAAAGAGACAGCAATAAAAGAAG
AGGCCAAAAAAGATGCTGAAGAGCAAGTGGAAGAAAAGAAAGAGGAAACA
CAGGCGGAAGAGAAAGTGGATGAAGGAATAACAATGAAAGATGATGGGTA
CGTAACTATTATAAATGGAGAAGCTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95156gene:BL95156Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95156_evm1-E1BL95156_evm1-E1-1564476830-83713Branchiostoma lanceolatumexon
BL95156_evm1-E2BL95156_evm1-E2-1564476830-83715Branchiostoma lanceolatumexon
BL95156_evm1-E3BL95156_evm1-E3-1564476830-83717Branchiostoma lanceolatumexon
BL95156_evm1-E4BL95156_evm1-E4-1564476830-83719Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95156_evm1transcript:BL95156_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000008genomeSc0000008:2530828..2533232 +
Properties
Property NameValue
Transcript idBL95156_evm1
Biotypeprotein_coding