transcript:BL95065_evm0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95065_evm0
Unique Nametranscript:BL95065_evm0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95065_evm0

>transcript:BL95065_evm0-protein ID=transcript:BL95065_evm0-protein|Name=transcript:BL95065_evm0|organism=Branchiostoma lanceolatum|type=polypeptide|length=389bp
MSEVHFKDAGIVMARYGEDWKVKRRIGLTALRQFGMGKRSLEGKITEEAR
SLCDVLAEKNGTATDMSLLLSNGVSNVICVMSFGERFEYNDMEFQRLMRL
ISVIAGNAGSSIAKSIPFLRKLPFVRKELEKVDRNDKELVDFIKAKINEN
KETFDPADIRDIIDVYLMETQHQTPDEADRTISEIGMINTVRDLFIAGAE
TTATTLKWGLLYLARHLEVQRKVQDEIDREFGASPPTFSQRGKLPYTEAT
IMEIQRIRPIVPLFPHTTSAATVLRGFDIPANTFVIPNLWSAMTDPEVTP
DPETFNPDRFLDEDGSLVRPEWFIPFSLGRRQCLGEQLAKMELFIFLATL
LQHFTFKLPDGAPAPSMEGSLGVVLAPKAYQTCAVPRDD
Run BLAST on NCBI

mRNA from alignment at Sc0000003:6256939..6261071+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95065_evm0 ID=transcript:BL95065_evm0|Name=transcript:BL95065_evm0|organism=Branchiostoma lanceolatum|type=mRNA|length=4133bp|location=Sequence derived from alignment at Sc0000003:6256939..6261071+ (Branchiostoma lanceolatum)
ATGTCCGAAGTACATTTCAAGGACGCAGGTATGTATACGAAAGGGAGGAG
ATATCGATGTTTACACGCAGAAAAAAAATGACGTATAGCAATGGCCGGGT
TCAATACTTTTCTGTATGGTATTTGAATGTCTGTTTCGATTACATGACCG
GGAAACCACCTCATGTCGTAACACACCAGGTTTGTACGGAAAATATCTGG
ACAGATTGATCTGATTCACTCACACAGGGAAGGTCCCCTACTCTTCTCAA
TAAGAGTGGTGTTTTTTTTTACGTGCTCGAAGTGTGGCTATCCTCAAACT
CGGGACCTCCCATCCTTTATAACGTCCTATCCGAGGGACGTCCCTAACCG
AAGCTAGATACTCATTTTCATCTGAGTGAAGTAAAAAAAATAAGTGAAAA
GTGCATGTCCCAAGGACTCTACGTCAGGGTTTGACAGGGGATTTGAACCT
ATGCTCTGGGCCAAAACACCCTGCCATTACGCCACTGCAAAAAGCCATAA
ATTGTGTTTATTGTCGACATGTTTCCAACTAAGCGACTGTACGATATTTA
GCGGGGGAAGAGCCAATCCTTAGAGGACAGAGCCCAGGGGAAACAATTGG
CAAGGGGGGAGGGCCAAGGAAACTTGAAATCTCATTCGGAACCTCCAAAC
ACATACATTGTGTATCTAAATATCTAAAATGGACTCCCAACCGAATTGCG
GAGTGAACTTTTTTTTCCATTTTTATCCTGCAGGAATCGTCATGGCCCGT
TACGGGGAGGATTGGAAGGTGAAACGCCGAATTGGCCTGACCGCTCTCCG
TCAGTTCGGCATGGGCAAACGGAGTCTGGAGGGCAAAATCACAGAGGAGG
CTCGGTCCTTGTGTGACGTTCTTGCGGAAAAGAACGGCACTGCAACGGAC
ATGTCGCTTCTTTTGTCAAATGGCGTTTCTAACGTTATTTGCGTCATGTC
GTTTGGTGAGCGATTCGAATACAACGACATGGAGTTCCAGAGGCTCATGC
GACTGATTTCGGTGATCGCAGGAAATGCCGGATCTTCCATTGCTAAATCT
ATCCCCTTCTTGCGCAAGTTGCCCTTTGTCAGAAAGGAACTGGAAAAAGT
AGACAGAAATGACAAGGAGCTCGTTGACTTTATCAAAGCAAAGATCAATG
AAAACAAAGAAACTTTTGACCCAGCCGACATCCGGGACATTATCGACGTG
TACTTGATGGAGACCCAGCACCAGACCCCGGATGAAGCGGACCGCACCAT
TTCAGAAATAGGGATGATCAACACAGTGAGAGACTTGTTCATCGCTGGAG
CAGAAACTACAGCCACGACCCTGAAATGGGGGTTGCTGTACCTAGCGCGC
CACCTGGAGGTGCAGCGAAAAGTGCAGGATGAGATCGACCGAGAGTTCGG
CGCCAGTCCTCCCACCTTCTCCCAGCGAGGGAAACTGCCCTACACCGAGG
CCACCATAATGGAAATCCAGCGGATCCGACCTATCGTGCCGCTCTTTCCT
CATACTACCTCCGCTGCAACAGTGTTGCGCGGGTTCGACATACCGGCCAA
CACTTTCGTCATCCCGAACCTGTGGTCCGCCATGACGGATCCGGAAGTGA
CCCCTGACCCCGAGACCTTCAACCCGGATAGGTTTCTCGATGAAGATGGA
AGTCTTGTCCGTCCAGAATGGTTCATTCCATTCTCGCTAGGTAACATATT
TTAACAAGTTGTTTTTTGATTTCCATGGTTATTACATCCAATCGTAGAAA
AGTGTTAGTAATACTAAACGCTCGATGTTGAAGTTAATGCCCCTAACAGG
CTAACCATGATATACATGTATAAGGGATTTACAACCTATTGATGAATATC
GAATGAAGGTAACCCGTATAATTAATGAATGGCGCATGCAATTAATAGGA
AATACAATTAACAAGTAATATATGGTTGTGGTCATGAATTTCTGATATGA
CTCGTGATTGGTTGATTGGGCTAAGNTTACACATTTTATTGTTTTACTCA
GGTTCTACTCTAGCGCAGTCATTACCTTCGCCGGGAATGTATGCATTCGC
GGTAAGGTTATGTTATCGGTTACGCCAGCTGTAAAGTGGGTCCGTATGTA
TGTCGAGATCATAAGTCGAGAGAACTTTGACGGATCTTGCTGATTTTTGG
TAGGTAAGTGGCAGTTGTGGGAACGAAGGTCAAGTTCGAAAATGGTTAAC
CTTGCGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAAAAGTTATGATACCAATTAAGCAAAAATATTCTTACAGTGATTATT
TTTATAACTCTTGGGAGAACTCGTGTAGGTATAGGTATGGGTTTGTTTTA
AACTTTGAAAGAGAATACTAGTAACTCAAGAAGGTGATGACGGATCGTCA
TGATTTGTAGGGATGTACATAGTTTGAGTGATGATTTACATGATCGTATA
AGAATCATGCAAATCAGGATCTGTGATGTGAAAAAGTATACAAACCCTTG
CATTCCATTGTAGTCAAACACGTGACATGTAACTGAGAAAGAGAGGAATA
TTGATAGATATCAATTATGCAAACGAATACCTAATTTGCATAATTTATGA
CAAAATACTATAATTCCAGAGTGGTAAATGATGGGATTTCATTCTTGTGG
CGTTTGGGAGATAATCAAATGTGGACGTTATCAGACATAAATCATGATGG
CCTCATTTACATAATATATGAGGAAATGCTACAATGGCCCTCTTTTCTAA
GATTTTACTTTAATGCTGTGTTTTGTGTAGAGAAAAGGATCACTTGAAAT
TCATGCAATCGAGGACCTTATTTACATACTGAGTGATAAGCATTCACTCG
AAAAGGCTAACATCAGTCGGCGAAGGTATGAGGTCGTGGAACTTTAGTTC
TATGATTGTTCCTGATGGAAAAAGATGGAGCCTGCATGACGTCAAAATCC
AACATGGCAGCGACCATGGGCGCCAATGACGGCAATATAGTTTTGACATT
CGTCAAGCCTGTAATATCATTTCATTTCTAATTTCGTCCTCATTTCCCTT
TCTNAATATCATTTCATTTCTAATTTTGTCCTCATTTCCCTTTCTTAGGG
CGGCGTCAGTGCCTTGGTGAGCAACTGGCCAAGATGGAACTTTTCATCTT
CTTGGCAACCTTGCTGCAGCACTTCACATTCAAGCTGCCAGACGGCGCTC
CTGCACCATCGATGGAAGGCTCCTTGGGTGTTGTCCTTGCACCCAAAGCC
TACCAGACTTGCGCCGTCCCTAGGGATGATTAG

Coding sequence (CDS) from alignment at Sc0000003:6256939..6261071+

>transcript:BL95065_evm0 ID=transcript:BL95065_evm0|Name=transcript:BL95065_evm0|organism=Branchiostoma lanceolatum|type=CDS|length=3510bp|location=Sequence derived from alignment at Sc0000003:6256939..6261071+ (Branchiostoma lanceolatum)
ATGTCCGAAGTACATTTCAAGGACGCAGGAATCGTCATGGCCCGTTACGG
GGAGGATTGGAAGGTGAAACGCCGAATTGGCCTGACCGCTCTCCGTCAGT
TCGGCATGGGCAAACGGAGTCTGGAGGGCAAAATCACAGAGGAGGCTCGG
TCCTTGTGTGACGTTCTTGCGGAAAAGAACGGCACTGCAACGGACATGTC
GCTTCTTTTGTCAAATGGCGTTTCTAACGTTATTTGCGTCATGTCGTTTG
GTGAGCGATTCGAATACAACGACATGGAGTTCCAGAGGCTCATGCGACTG
ATTTCGGTGATCGCAGGAAATGCCGGATCTTCCATTGCTAAATCTATCCC
CTTCTTGCGCAAGTTGCCCTTTGTCAGAAAGGAACTGGAAAAAGTAGACA
GAAATGACAAGGAGCTCGTTGACTTTATCAAAGCAAAGATCAATGAAAAC
AAAGAAACTTTTGACCCAGCCGACATCCGGGACATTATCGACGTGTACTT
GATGGAGACCCAGCACCAGACCCCGGATGAAGCGGACCGCACCATTTCAG
AAATAGGGATGATCAACACAGTGAGAGACTTGTTCATCGCTGGAGCAGAA
ACTACAGCCACGACCCTGAAATGGGGGTTGCTGTACCTAGCGCGCCACCT
GGAGGTGCAGCGAAAAGTGCAGGATGAGATCGACCGAGAGTTCGGCGCCA
GTCCTCCCACCTTCTCCCAGCGAGGGAAACTGCCCTACACCGAGGCCACC
ATAATGGAAATCCAGCGGATCCGACCTATCGTGCCGCTCTTTCCTCATAC
TACCTCCGCTGCAACAGTGTTGCGCGGGTTCGACATACCGGCCAACACTT
TCGTCATCCCGAACCTGTGGTCCGCCATGACGGATCCGGAAGTGACCCCT
GACCCCGAGACCTTCAACCCGGATAGGTTTCTCGATGAAGATGGAAGTCT
TGTCCGTCCAGAATGGTTCATTCCATTCTCGCTAGGGCGGCGTCAGTGCC
TTGGTGAGCAACTGGCCAAGATGGAACTTTTCATCTTCTTGGCAACCTTG
CTGCAGCACTTCACATTCAAGCTGCCAGACGGCGCTCCTGCACCATCGAT
GGAAGGCTCCTTGGGTGTTGTCCTTGCACCCAAAGCCTACCAGACTTGCG
CCGTCCCTAGGGATGATTAGATGTCCGAAGTACATTTCAAGGACGCAGGA
ATCGTCATGGCCCGTTACGGGGAGGATTGGAAGGTGAAACGCCGAATTGG
CCTGACCGCTCTCCGTCAGTTCGGCATGGGCAAACGGAGTCTGGAGGGCA
AAATCACAGAGGAGGCTCGGTCCTTGTGTGACGTTCTTGCGGAAAAGAAC
GGCACTGCAACGGACATGTCGCTTCTTTTGTCAAATGGCGTTTCTAACGT
TATTTGCGTCATGTCGTTTGGTGAGCGATTCGAATACAACGACATGGAGT
TCCAGAGGCTCATGCGACTGATTTCGGTGATCGCAGGAAATGCCGGATCT
TCCATTGCTAAATCTATCCCCTTCTTGCGCAAGTTGCCCTTTGTCAGAAA
GGAACTGGAAAAAGTAGACAGAAATGACAAGGAGCTCGTTGACTTTATCA
AAGCAAAGATCAATGAAAACAAAGAAACTTTTGACCCAGCCGACATCCGG
GACATTATCGACGTGTACTTGATGGAGACCCAGCACCAGACCCCGGATGA
AGCGGACCGCACCATTTCAGAAATAGGGATGATCAACACAGTGAGAGACT
TGTTCATCGCTGGAGCAGAAACTACAGCCACGACCCTGAAATGGGGGTTG
CTGTACCTAGCGCGCCACCTGGAGGTGCAGCGAAAAGTGCAGGATGAGAT
CGACCGAGAGTTCGGCGCCAGTCCTCCCACCTTCTCCCAGCGAGGGAAAC
TGCCCTACACCGAGGCCACCATAATGGAAATCCAGCGGATCCGACCTATC
GTGCCGCTCTTTCCTCATACTACCTCCGCTGCAACAGTGTTGCGCGGGTT
CGACATACCGGCCAACACTTTCGTCATCCCGAACCTGTGGTCCGCCATGA
CGGATCCGGAAGTGACCCCTGACCCCGAGACCTTCAACCCGGATAGGTTT
CTCGATGAAGATGGAAGTCTTGTCCGTCCAGAATGGTTCATTCCATTCTC
GCTAGGGCGGCGTCAGTGCCTTGGTGAGCAACTGGCCAAGATGGAACTTT
TCATCTTCTTGGCAACCTTGCTGCAGCACTTCACATTCAAGCTGCCAGAC
GGCGCTCCTGCACCATCGATGGAAGGCTCCTTGGGTGTTGTCCTTGCACC
CAAAGCCTACCAGACTTGCGCCGTCCCTAGGGATGATTAGATGTCCGAAG
TACATTTCAAGGACGCAGGAATCGTCATGGCCCGTTACGGGGAGGATTGG
AAGGTGAAACGCCGAATTGGCCTGACCGCTCTCCGTCAGTTCGGCATGGG
CAAACGGAGTCTGGAGGGCAAAATCACAGAGGAGGCTCGGTCCTTGTGTG
ACGTTCTTGCGGAAAAGAACGGCACTGCAACGGACATGTCGCTTCTTTTG
TCAAATGGCGTTTCTAACGTTATTTGCGTCATGTCGTTTGGTGAGCGATT
CGAATACAACGACATGGAGTTCCAGAGGCTCATGCGACTGATTTCGGTGA
TCGCAGGAAATGCCGGATCTTCCATTGCTAAATCTATCCCCTTCTTGCGC
AAGTTGCCCTTTGTCAGAAAGGAACTGGAAAAAGTAGACAGAAATGACAA
GGAGCTCGTTGACTTTATCAAAGCAAAGATCAATGAAAACAAAGAAACTT
TTGACCCAGCCGACATCCGGGACATTATCGACGTGTACTTGATGGAGACC
CAGCACCAGACCCCGGATGAAGCGGACCGCACCATTTCAGAAATAGGGAT
GATCAACACAGTGAGAGACTTGTTCATCGCTGGAGCAGAAACTACAGCCA
CGACCCTGAAATGGGGGTTGCTGTACCTAGCGCGCCACCTGGAGGTGCAG
CGAAAAGTGCAGGATGAGATCGACCGAGAGTTCGGCGCCAGTCCTCCCAC
CTTCTCCCAGCGAGGGAAACTGCCCTACACCGAGGCCACCATAATGGAAA
TCCAGCGGATCCGACCTATCGTGCCGCTCTTTCCTCATACTACCTCCGCT
GCAACAGTGTTGCGCGGGTTCGACATACCGGCCAACACTTTCGTCATCCC
GAACCTGTGGTCCGCCATGACGGATCCGGAAGTGACCCCTGACCCCGAGA
CCTTCAACCCGGATAGGTTTCTCGATGAAGATGGAAGTCTTGTCCGTCCA
GAATGGTTCATTCCATTCTCGCTAGGGCGGCGTCAGTGCCTTGGTGAGCA
ACTGGCCAAGATGGAACTTTTCATCTTCTTGGCAACCTTGCTGCAGCACT
TCACATTCAAGCTGCCAGACGGCGCTCCTGCACCATCGATGGAAGGCTCC
TTGGGTGTTGTCCTTGCACCCAAAGCCTACCAGACTTGCGCCGTCCCTAG
GGATGATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95065gene:BL95065Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95065_evm0-E1BL95065_evm0-E1-1564476830-46946Branchiostoma lanceolatumexon
BL95065_evm0-E2BL95065_evm0-E2-1564476830-46948Branchiostoma lanceolatumexon
BL95065_evm0-E3BL95065_evm0-E3-1564476830-46950Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95065_evm0transcript:BL95065_evm0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000003genomeSc0000003:6256939..6261071 +
Properties
Property NameValue
Transcript idBL95065_evm0
Biotypeprotein_coding