transcript:BL95047_evm1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL95047_evm1
Unique Nametranscript:BL95047_evm1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL95047_evm1

>transcript:BL95047_evm1-protein ID=transcript:BL95047_evm1-protein|Name=transcript:BL95047_evm1|organism=Branchiostoma lanceolatum|type=polypeptide|length=152bp
MKIIAASVMVLTVALLTDVGHGWRRRTEGRKKLEALEKIDQKLKEKITEL
KEEAAWEQAMENLESLAEKLKVKTGGDLQDDAGSLQKKEESGLQFDEEAA
EFVEDDGGLEMEEETGGGLEEEEKETDGGLVMEKLEELEDELDVLKEGLQ
KG
Run BLAST on NCBI

mRNA from alignment at Sc0000002:5681798..5683242+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL95047_evm1 ID=transcript:BL95047_evm1|Name=transcript:BL95047_evm1|organism=Branchiostoma lanceolatum|type=mRNA|length=1445bp|location=Sequence derived from alignment at Sc0000002:5681798..5683242+ (Branchiostoma lanceolatum)
ATGAAGATCATTGCAGCCTCAGTGATGGTCCTTACTGTAGCCCTGCTGAC CGACGTTGGACATGGATGGCGACGACGTAGTACGTACACAGATAGAGATC TATCTTTTAGTTTCTTTGGTGCGCTATTATCTTTTTTATCGGCCATCATA ACCTGTTATGGTGCATGCGGTGCACGAACCAACAAGCTTGGCGCTAGATG TCGAAATGTACATTTTGCGTTTTCTTGCGTGTGTGTTTCTGTGTGTGTTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCG TGTGTGTGTGTTTATGTGTGTGTATGTGTGTGTGTATGTGTGTGTGTGTC TGTGTGTTTATATGTGATTGTGTGCTTATATGTGTGTGTGTGTTTGTGTG TGCGTTTGTGTGTGTGTGTGTGTTTTTTGTTTGTTTTGTTTTGTTTCAAC GGTATTGCATACCCAGTAACCCGCATCAAGGTGTAACACACCAGGTTTGT ACTGAAGAGCTGCATATCTGGACAGACTAATATGATCCACACACACCGGG AAGGACCCCTACTCTTTTCGATAAGAGTGTTGGGTTCTTTAACGTGCCTG AGGTGTGGATCTCCTCAAACACGGGACCTCCATTTCACGTCCTATCCGAG GGCCGTTCCTAATCTAAGCTGGGTACTCATTTAAAAGTGCCTTTCCCAAG GGACAAATCAGGGAACCCCGGATTCGAACCCGGTATCTCTGGGTTCTGGA GCCAAATACCCTGCCACTACGCCACCGCGACTCCACTTTGTGCGTGTGTG TGTGCGTGTTTCTGTGTGTTTTTGTTTGTTTATGTGTGTGTGTTTGACTC AAATGGAATATCATTGTGACATTACCTGTAAGACAATGACCTTACCTTAA GAATACATAGCCATTTGTCTTGTGTTTTGCTTTTCACCAAGCTGAGGGAC GCAAGAAGCTAGAGGCCTTAGAGAAAATCGACCAGAAATTAAAGGAAAAG ATTACGGAGCTTAAGGAGGAGGCAGCCTGGGAACAGGCGATGGAGAACTT GGAGAGTCTGGCCGAGAAACTGAAGGTAAAAACTGGAGGTGACCTTCAAG ATGATGCAGGTACGGCGTGAAATATTTATTAATGAATGTCAAACTGAAAA TGAATTATTTGCACTTCCCAATTTCAATTTGACTCATATTTCAGTGATTC GCCAATTTAGAGTTAGCGCTGCCTTTTTTGTAGGCTCACTCCAGAAGAAG GAAGAATCTGGGTTGCAGTTTGATGAAGAAGCTGCAGAGTTCGTGGAGGA CGATGGAGGTTTGGAGATGGAGGAGGAGACCGGTGGAGGTTTGGAGGAGG AGGAGAAGGAGACCGATGGAGGTCTTGTGATGGAGAAGTTAGAGGAGCTG GAGGACGAGCTAGATGTTCTGAAGGAAGGTCTTCAGAAGGGGTAG

Coding sequence (CDS) from alignment at Sc0000002:5681798..5683242+

>transcript:BL95047_evm1 ID=transcript:BL95047_evm1|Name=transcript:BL95047_evm1|organism=Branchiostoma lanceolatum|type=CDS|length=1377bp|location=Sequence derived from alignment at Sc0000002:5681798..5683242+ (Branchiostoma lanceolatum)
ATGAAGATCATTGCAGCCTCAGTGATGGTCCTTACTGTAGCCCTGCTGAC
CGACGTTGGACATGGATGGCGACGACGTACTGAGGGACGCAAGAAGCTAG
AGGCCTTAGAGAAAATCGACCAGAAATTAAAGGAAAAGATTACGGAGCTT
AAGGAGGAGGCAGCCTGGGAACAGGCGATGGAGAACTTGGAGAGTCTGGC
CGAGAAACTGAAGGTAAAAACTGGAGGTGACCTTCAAGATGATGCAGGCT
CACTCCAGAAGAAGGAAGAATCTGGGTTGCAGTTTGATGAAGAAGCTGCA
GAGTTCGTGGAGGACGATGGAGGTTTGGAGATGGAGGAGGAGACCGGTGG
AGGTTTGGAGGAGGAGGAGAAGGAGACCGATGGAGGTCTTGTGATGGAGA
AGTTAGAGGAGCTGGAGGACGAGCTAGATGTTCTGAAGGAAGGTCTTCAG
AAGGGGTAGATGAAGATCATTGCAGCCTCAGTGATGGTCCTTACTGTAGC
CCTGCTGACCGACGTTGGACATGGATGGCGACGACGTACTGAGGGACGCA
AGAAGCTAGAGGCCTTAGAGAAAATCGACCAGAAATTAAAGGAAAAGATT
ACGGAGCTTAAGGAGGAGGCAGCCTGGGAACAGGCGATGGAGAACTTGGA
GAGTCTGGCCGAGAAACTGAAGGTAAAAACTGGAGGTGACCTTCAAGATG
ATGCAGGCTCACTCCAGAAGAAGGAAGAATCTGGGTTGCAGTTTGATGAA
GAAGCTGCAGAGTTCGTGGAGGACGATGGAGGTTTGGAGATGGAGGAGGA
GACCGGTGGAGGTTTGGAGGAGGAGGAGAAGGAGACCGATGGAGGTCTTG
TGATGGAGAAGTTAGAGGAGCTGGAGGACGAGCTAGATGTTCTGAAGGAA
GGTCTTCAGAAGGGGTAGATGAAGATCATTGCAGCCTCAGTGATGGTCCT
TACTGTAGCCCTGCTGACCGACGTTGGACATGGATGGCGACGACGTACTG
AGGGACGCAAGAAGCTAGAGGCCTTAGAGAAAATCGACCAGAAATTAAAG
GAAAAGATTACGGAGCTTAAGGAGGAGGCAGCCTGGGAACAGGCGATGGA
GAACTTGGAGAGTCTGGCCGAGAAACTGAAGGTAAAAACTGGAGGTGACC
TTCAAGATGATGCAGGCTCACTCCAGAAGAAGGAAGAATCTGGGTTGCAG
TTTGATGAAGAAGCTGCAGAGTTCGTGGAGGACGATGGAGGTTTGGAGAT
GGAGGAGGAGACCGGTGGAGGTTTGGAGGAGGAGGAGAAGGAGACCGATG
GAGGTCTTGTGATGGAGAAGTTAGAGGAGCTGGAGGACGAGCTAGATGTT
CTGAAGGAAGGTCTTCAGAAGGGGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL95047gene:BL95047Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL95047_evm1-E1BL95047_evm1-E1-1564476830-36902Branchiostoma lanceolatumexon
BL95047_evm1-E2BL95047_evm1-E2-1564476830-36904Branchiostoma lanceolatumexon
BL95047_evm1-E3BL95047_evm1-E3-1564476830-36906Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL95047_evm1transcript:BL95047_evm1-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000002genomeSc0000002:5681798..5683242 +
Properties
Property NameValue
Transcript idBL95047_evm1
Biotypeprotein_coding