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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL91437_cuf1 >transcript:BL91437_cuf1-protein ID=transcript:BL91437_cuf1-protein|Name=transcript:BL91437_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=121bp
MVRTTAAGFLTTRVQQLSPARKEEKRRRDGRRSGGDWRGENIEEKRGGED
WRGETKRRHCKKKRTSITIVLNSTQRKELVSPVFFSLLLFCFGYEKKRTS
YHRYFFLHFLFVKGKKYRTTY Run BLAST on NCBI mRNA from alignment at Sc0000014:1376134..1381826+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL91437_cuf1 ID=transcript:BL91437_cuf1|Name=transcript:BL91437_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5693bp|location=Sequence derived from alignment at Sc0000014:1376134..1381826+ (Branchiostoma lanceolatum)
CTGTTGTAAATGCTGAGTCAAGGATATCTTGTTTTCTATTTCTGTACAGA
TACTGAATAACCCATTCAACAGACGACACAGCATTGAACTGTCAGCTTTT
GGCAACAGGACTAAAGAAAGATAAGAAGCTCTTCATGATCATCTTTATAC
ATCAGTATTGAAACAAGGCTGGACACAGAATATAGGTGTAAACTTAAACT
ATAACATTCTGAAGTTTGTGTATTGTATCTGTCATTAGTTTAAGCCTGGG
TGCCATCCAATTTCTACCAGGGCTCTTAATACTTGCTTTCCTGAAAAAAA
GTAGGGAAGCTCTGATAGTAATCCGATGGCACTTAGGCTAGTTCTTAGTT
TGAGTTGGTTAGTTTTTCAAATGCTAACACTGTTGCTTTTTGTTCATTGA
CAGAATGACTTCTTGGACAGATGACCTTGCCTCGAGGCGACTTGAAGGAA
GAATGTCTTGAGAGAGGATGCAGATTTGTGACATCAGAAGATGTGTGCAG
GTCTGTTCCTGTGAACGGCCTTACTGGGGAGATGGTGGCAGTGGTATAGG
TCTTTGCATACCAGCTGTCATGATGAAATGCTGTAAATGCGTTTAAGTTT
GCATGGTTTTTATTTTGCGGTAGGAAGAAAATGAAGTGTTTGCGGTGGTT
TTAAGTTCACGTTTTAAACAATAGTAACGCTACAGTCGTACATGTAGGTG
GGCAAAAGTTTTGCGGTGGTTTTAAGTTTGTGGTCTTTTCTTAAGAGTTC
ACTACAAAAAACTGCGAACATAAAACCACCGCAAACATTTCTGCATTCAT
AGTATATTGCATAGACCATTGCACTGCATCATTATCAATGTTTTTTCATA
GGATAGTTTTGCCTCATCGGATGGCTTTTCAGCACCATGTGTGTCATACT
TCAAGCGAGTAATCAAGTGTGTGTGTGTGTTTATAAGAGTGTTTGCATCT
GTGTGTACATGTGTTTGTGTGTATGAAAGAGAGTGTGCGTGTATGAGGAG
TATATGTGTGCATATGTTTGTGTGTGTCTGTACATGTTTGTGTATGTGTG
TGTTTGAAAGAATTTTGATGTGAGAAGTGAATGTGTATATTGTGCAGTGT
AAGTGTGCATGAGAGAGAGAGTGTGCACATATTGAGTGTGTGTGTGTGTT
TTTGTAGGTGAATCTCCAAGAAGTACACTGCAATTCTGTTTATCAGTTTC
CTTACATTTTTGCTTGTTTCATTGTTACTTAGGTCAACAATGAAAAGCTA
GAGGGGTTCCTGACTACAAGGGGGCAGCAGCTCATTCTTGTAGCACAAGA
AGAAAAGAACTGTGAGAAGAGAGAAGATGGCTGAAGAGATATTGAAGAAA
GAAAAGAACTAGTATCACTTCAGTCTTGACTTTGATCAAGGAAAAGAACT
AGCTAGTGTCACAAAATTGATTTATTTCCTTTGTTTCTTTTTTTCTTCAT
TTCAACTCAAGATTGTTTATTGCTTATTTTGCCAATGTGAAAGGAAATGA
CTTTTTTCTTGTCTGTTTTGCTTTCTTGTGGTCAAATCAATGAACTAGTA
TCTTCTCTTTATTTCAATTTTTGCTACGTCAAAGAAAAGAACTAGTATCA
CAGATATTCTGGTGAGTTTTGACTTGGCCTTGGTGAGACCAGCAGCTGTG
TGTGGTTTGTGACTTCAAGAGTGCAACTACTCAGCAAGAAGAGAAGAAGA
TAGATCGAAAGGAGCAGAGAATAACAAACGGATGAAGAAGACTGGGGAAG
AGAGAAGATAGAAGAAAAGAAGACTGAAAAATGAAAAGAACTAGTATCAC
TTTAATCTCCAGGCTATCGTCAAAGAAAAGAACGAGCTAGTATCACTAGT
TTCCATTTTGTTTTTGTTTGTTACTTTGGACTCTAGATAGTTTTTTGCTT
GTTTTGCCTATGCAAATGGAAGAACTTTGAATCACACAATTAGTTATATT
TTTCTTGTCTGTTTTGCTTTGTTTTGGTCAAATCAAAGGAAAGAACTAGT
ATCACTGAGAATCTCTTTGTTTTGCTTTTGGTTATGTCAAAGAAAATAAC
TTAAGTATCACAGGTAAGTTTGGACCTGGCCTTGGTGAGACCAGCAGCAG
TGGTTCTTGACAGGAGTGCAACAACTCTGCAAGCCCTGCAAGACTAGGAG
AGAAGAGAGCCAAGCAAAGGAGGAGAGGAGATTGGAGAAGAGAGAAGATA
GAAGAAAAGAAAACTGACAAAAAGAAAAGAGCTAGTGTCACTTTAATGTT
GGCTTTGGTCAAGGAAAAGAACTAGCTCATATCACAAGACATACTTTTTT
CCCCTTTGTTTCTGTTTTGCCTTTGATTTTGGTCATTTCACATCTGCTTT
CTTTTGTTTTGGCCATGTCAAAGGAAAGAACTGGTGTCACTGAGAATCTT
CTCTTTGTTTTGTTTACTTTTGCTTATGTCAAAGAAAAGAACTAATTTAT
ATAAGTATCTTATTCACGTAAGATTGGACCTCAGTCCTTGGTGAGACCAG
CAGCAGCTGTGGTCTCTGACTACAAGAATGCAACAACTCAGCCCTGCAAG
AAGAGAAGAGGGGAAGAAACAGGAGGAGAAGACTCACTTTCCAGGAGAAG
GGAGAAGAGAGAAGAAAAGAAGACTGACAAAAAGATAAGAACTAAAGTGT
CACTTTGAAAAGAACTAGCTCGTATCACAAGACATACTTTTATTTCCTTT
GTTTCTATTTTGCCTTTAATTTGTTGTTTTCTTATGGCCAATTTTGTCAA
AGAAAAGAACTGAGTATCACAGGACTATTTGTTACCTCTGTTTTGCATTC
TTTTGACCACATCAAGGAAAAGAACTAGTATCACAGGTAAATTCTTTTAT
TTTTATTTTTGGCCATGTCATTAAAAGAAAGAAACTGGTGTCACAGAATA
TAATTTTCTTGCCTCTGTTTAATGCTGTCATTTGGCCATGTCAAAGAAAA
GAGCTTGTATCACTCAGGTATCTGACTGGTAAGTTTGGACTTAGCCATGG
TGAGAACAACAGCAGCCGGGTTCCTGACTACAAGAGTGCAACAACTCAGC
CCAGCAAGAAAAGAAGAAAAGAGGAGAAGAGATGGGAGGAGGTCAGGAGG
AGACTGGAGAGGGGAGAATATAGAAGAGAAGAGGGGAGGAGAAGACTGGA
GAGGAGAGACAAAAAGAAGACATTGCAAAAAGAAAAGAACTAGTATCACT
ATAGTCTTGAACTCAACTCAAAGAAAAGAACTTGTGTCACCAGTATTTTT
TTCTTTGCTACTGTTTTGTTTTGGCTATGAAAAGAAAAGAACTTCGTATC
ACAGGTATTTTTTCTTACATTTTCTTTTCGTCAAAGGAAAGAAATATAGA
ACCACTTACTAAAATCTTCTCTTTGTTTCTGTTTTCATTATATCAAAGAA
AAGAACCAAGTATCACTCTGGTATTCTGGTAAGTTTGAACTTGGCCTTGG
TGAGACCAGAAGCAGCACAGTGGTTCCTGACTACAAGCTAGGGTGTACAA
GAACTCAGCCCTCCTACAAGAGAAGAAGAGAGATTTACTACAGAGGAAGC
AGAGGACAAGAGAGGAAGCTGGAAGAAAATAGGACATTTCAAAAGAAAAG
AACTATGTATCACTTGTGTCATGTCTCTTTCTTGTCTCTTTGATCATAAC
CTGTGTCCATTGCAATACATTGACAGAAACTAGAAAGATAACATTTCCAA
AGAAGCCTAGATTGGTTCCTCTGCACCTTTGGTAAGAAAACTTAATCTCC
AAGCAGATCAAACGGTTGCAAAGACCGTATCCAACTGGCAAAAGGAGTTT
TTATTGCAACCGGGGCAATAAAAACTCCTTTAGCCAGTTGGATAAGGTCT
TTGCAACTGTTGGATCTGCTTGGAGATTAAAGAAAACAACCCTTGGTGCA
TAAATGGCCAAAAATACATTCTTGTTCCAAAAAGAGCACCTTGGCAAAAT
TACTCTTCCTGACTAATTACCAGTACTTCCTGTACAAAAACTGCTTTTCC
AATCACTTCCTGTATATAATAGACGGCTCCAACAATTGACCTCTCTGAAA
AAATGTACATTTCAAAATTGCCCTTATATAAAAAGCAATCATTTTTAACT
ACCTTAGTAACCTGCCCTAAAATAGAGAATTTTAAGTTACCTCAATTGTA
GAAATCAACTTTAAAATCACTCTGTTCAAAACTGTCCAAAATTACCCCCT
TGTGTAAAATGGCCTGTTCCTAGCCCTCCCCATTGCAAAAATGTACCTTT
CCAAAAATATTGTCCCTATAGAAAAATAGCTAATTACAAACTTCCCCTTA
CAAAAATGTGATCATAAATTACCCCGTGCTTAAGTTATCTTTGAAATCAC
TTTGTTCTGAACTTTCCAAAATGACCCCCTTGTGTAAAATGGCCTGTTCC
TAGCCCTCCCCATTGCAAAATGTACCTTTCCAAATTGTCCCTTAGAAAAA
TGGCTAATTCAAAACTTTCCCATACAAAAAAAGTTCCTAGATTACCCCAC
GTTTAAGTTATCTTTGAAATAACTTGTGTGGAGAAATAAACTTTGAAATC
ACTCTGTTCTAAATTTTCCAAAATGAACCCCTAGTGCAAAATGTTTTTTT
TCTAACCCACCCCTGTGCAAAACTGTACCTTGTGGGGAAAATAACGTATT
TCAAACTACCCCATACAGAAACAGAATTCCTAAAACACTTCCTGTGCTGA
ACTTTGAAATAACCTTTGCAAAAAAACAACTCCCCAAAAGAACCCATGTG
ATAAATTGGACTAAGTCTAACCCTTTGCAAAAATGTACCTAACCCCTGTT
TAAAACTGAGTATTTTTCCAAACACAAAATAGGAATAAAAAAATAGAGCA
TTTATAAATCATCCATGAAATTGGATATCTAAATCNGGAATAAAAAAAGT
AGAGCATTTATAAATCATCCATGAAATTGGATGTCTAAATCACTCCCTGC
ACAAAATTGACAGCTAGAAAATGACCTCCAGTATAAAATAGATAAGATAA
TCCCTAATCCACCCGTGGCATTCTTCACAAAAAATTGATCTTGCAGACAG
GAAAAATTATCATCTTACTTAGGTTAAGACCTAATGAGTTCTTGAAAACA
TCAAATTGAAATTGTCAGGCAGGACTTGAAAACAAATTACTGTGAGGAAA
TAAAGTGACCATAAACCAAATCTTAATCAAGAACTAGTATCATAAGACAT
ACTTTTAGTTCCTAGTGTTTTGATAAGTTTTAGCCAAGTCAGAGAAAAAC
AATGTGTGTCCCTGGTATTCTGGCAATTCTGGCCTTTGTAAGGACATAGG
CACATGTTTCTGACTACAACGGTGCAACAACTCAGACTGCAAGACAAGAC
AAGAGATGAGGACAGTAGAAGAGCCAACGATAGAAGAAAAGAAGACTGCA
AAGGGAAAATAACTAGTATTGATTATTGACTATTGATACAAGGAGGAGGC
TCTGAAGTATTTTTTCTTGCTTCTGTTTTGTTTCCTTTCGGCCATGTCAA
AGAAGTAAACTTTCTTACTTTTGTTTTGTTTTGTTTGGCTGTCAAAGAAA
GGAACTCGTATCACAGGTTTTCTGGTATGTTTGGACATCATCCTGGTGAG
CCCAGCAGGAGCGCAGACTACAATATGCAACAACTCAGACCCGCAAGGAG
GAGAAGAGGGTTCTCCGAGCTGCAGAAGAAAAAAATATGGAAG Coding sequence (CDS) from alignment at Sc0000014:1376134..1381826+ >transcript:BL91437_cuf1 ID=transcript:BL91437_cuf1|Name=transcript:BL91437_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=366bp|location=Sequence derived from alignment at Sc0000014:1376134..1381826+ (Branchiostoma lanceolatum)
ATGGTGAGAACAACAGCAGCCGGGTTCCTGACTACAAGAGTGCAACAACT
CAGCCCAGCAAGAAAAGAAGAAAAGAGGAGAAGAGATGGGAGGAGGTCAG
GAGGAGACTGGAGAGGGGAGAATATAGAAGAGAAGAGGGGAGGAGAAGAC
TGGAGAGGAGAGACAAAAAGAAGACATTGCAAAAAGAAAAGAACTAGTAT
CACTATAGTCTTGAACTCAACTCAAAGAAAAGAACTTGTGTCACCAGTAT
TTTTTTCTTTGCTACTGTTTTGTTTTGGCTATGAAAAGAAAAGAACTTCG
TATCACAGGTATTTTTTCTTACATTTTCTTTTCGTCAAAGGAAAGAAATA
TAGAACCACTTACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000014 | genome | Sc0000014:1376134..1381826 + |
Properties
| Property Name | Value |
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| Transcript id | BL91437_cuf1 |
| Biotype | protein_coding |
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