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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL91319_cuf1 >transcript:BL91319_cuf1-protein ID=transcript:BL91319_cuf1-protein|Name=transcript:BL91319_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=168bp
MADTKTSVITKEDLSFKMAASRGFMFGAALAVCFLVTTLTGLVSYTYLRK
QGERLTHYNRPSTRHLLQKQPASQVDNQVADSRCNCSRKALVFANAIPKG
EKEDVLQRKKKELLKYRKRTESARETLLFANGSVPLSYPTQGLAVVPEGV
VEIPGKAPSGCLTYNTYL Run BLAST on NCBI mRNA from alignment at Sc0000769:22785..27494+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL91319_cuf1 ID=transcript:BL91319_cuf1|Name=transcript:BL91319_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4710bp|location=Sequence derived from alignment at Sc0000769:22785..27494+ (Branchiostoma lanceolatum)
GTTCGGCTATGTGTAACCTGGGCTTGTTTAACTTTACATTAAACAGCGCC
TGCGGGTGTTAGCACCACATATACAGAATCAGGTGTATGATAGGGGTATC
GCAGGCTAGTTTAAAGTTACAGCGAGGGCTTATCAAACAAAGGTAATCTA
TATTGCATCAGTGAAGTGATTAACTGATTAGCCAATACTGGACTTTAGCA
TTGCTCTCCACAATACACTACTAGTATGTGATAAAATACGTGTGTGCTAT
TTATGGCTATGTGGCGTGTACGTGACCGAGGAAAGTTCAATGTAACGTTA
CAGACTGTTTTAGAGCTTGTCGTACAGCACACCGTGGAAGGATACGAAGA
TTGAAAACTCAAATACTATGACATCATACATAAACGCATGTACATAAACG
TGGCTGTGTGCAGCGTGTTGTTAATGTACTGATTTCTGGATCTAAATAGG
ATTTGATTACTTGTTATACAACACCGTAATCACGTGATGGCAGATACGAA
AACTTCCGTCATCACAAAAGAAGACTTGAGCTTCAAGATGGCGGCGTCGC
GTGGATTTATGTTTGGAGCAGCCCTCGCGGTGTGTTTTCTTGTGACCACG
TTAACTGGACTCGTCAGCTACACTTATCTAAGGAAGCAGGGGGAAAGGTT
AACACACTACAACAGACCCAGTACAAGACACCTGCTACAGAAACAGCCCG
CCTCACAGTGAGTACCTTTTTCTGAATGATTCTAATTTCCGTGAATTTGA
GACTAGTTTTGACTACGTTTCTCTTCGAGTATGTTCCTGAAAATAGACAC
GAACATAATGGCAGGCAGAAGTTGTTTAAAAGAAAAAGAAAACACATTTA
TATTGATTCTCTGATTATGATAGCAACACTAACGTAGACATGTACATTTG
ATACAGGTATTCTATTATTCATAACTCAGTCCCGATGGCCCGTTTTATCA
TTATTTTCTATCATGTATTGTTGTTTAAGTACATACAAACATGTAACGGT
AGAAAATGTTTCATCGACATTGAGATAGTACCGTTACATAAACTGAGTTC
ATGTCTGTGAATTAGAGCCCGGCCATATTCGTTGCAAGATCGTCGTGCGA
CTGGAAACTGAGGGCATTCTTGGGATAGCCGTGTAAATGTTGGGCAAAAT
TCAGCTTTCTTGATAATGGAAAAGACTGCCTTCAATCATTGTCGGTGGTT
GGTTCTGTCACAGCCTTCTTGAAAACGGCACAATATCAAACTCGCGCGAC
TTACTTCCTTGTGTGACGCATTTCCACGAAGAGCACCTTGGTAGGAGCGC
GCTTCATTTCACACCGTAAGTTCAGTCCTACAGCACCAAGAGAAGGTGTA
CATAAAATTCTTTCAATAAACTTGAAACGTTCATTTCAACAGTAGGATTG
ACGGCAAATTTTCGTCAATCACCCCCCCCCCCCCCCACTAGTGGTGGGTT
TGTCCGCTGAAAAGTTACTCCCGCCATTGTAAATGACTGGACATTGTAGG
TCAGTAGACCGTATACCTTACGGGGCCTGGTATGAGCTGCCACGAACCAT
AAAGGCGAACAGTTTAAGACAAACACCGTGCAGCTAGAATTACCTGTGAC
CTGTACAAAACATCACTGCTACCATGTATCATGTTACGGTAACCTTCGGC
GGGCCACGGCATTTCAAATATCTCAGTAGCGTTTGCCCAGCCCCGATCTT
AATGTTTACACCGATACTTTAAAAGTCAAAACTGACAATTTAGTGAAACG
CATTAAGACCAGTGTACATTGTCGGGAGTTTCAACAAGACTATTCGATGG
GATGATTTATACAACGCAATGAAATTAGTTTTAATCCAGCAACACAACAA
AATAAACTCCTGAAGCCGTGACAATACTAGTTACCTGGAAACGTCAAGCA
TGGCATATTTGATTGGTAATTTTACACCACGTATGTCATCAGTTTTTTTC
TAACTGAAACGACAGCTAGTATCTTTATAAAGAGTCGCTGACATCGATCC
TTTCATTGATATCTAAACTATTCATGATGATTCCAGGTTTGAAACACTTA
TCAGTTTGAGGAAATTTGGATTACCCAGCGACCCACCGCCCCGATATTAC
ATCTTCGCCACCTCAAAACATTCTTGTCTTGCCACGTGTCACTTATGTTG
CCAAAATTGACGAAAAAAAACGTCTTTTTTTAACCGCCTCAAGCAAGCGG
TGTGAACGAATAATAGTTAAAACTATTATTCGTTGCCAGACTATTTTGAA
AATTCTATGGGCATTTTCTGATTTATGTTATTCGTGTAGAGCAGTACATA
GAGAACGACTCAAGTGGACTATAGCTGGTAAACCTAGGCTTGTCCTGGCA
CATTTTTGAAAACCATAGACCGCAGTATAAATACTTCTTCACATGGCGTT
AAACAGGCCATGCAAGAGCTCAATATTTCTTCACGTTGGTAATAAATTTG
GATGTGTCCGATAATTGACGTTCTGACTCAATGGGGCGATAATTACTAGC
GCTAGCGCTACGTTATGTCAAATCATATTTGAACGTGTCCACCGATGAAG
TTGTGGAGCATTCAGATGTGCACGGTACAAACAGCTCAGAATGAATTGTC
CTCTTAACAAATTACATCAAAAGGTAACCGTCCACGCCCGGAGCTTGGGA
GCTGATTTCATTAGTGTTGGAGACTTTCTAGTCTGTGTAACGCAACTCAG
CTGCCCGGGGCTTTAATGGCCGATCCCCGCAGACGCCGGATGTTGGACTG
GCCCCTATAGCGCGAGTCAACCGGGCTAGATCTAGAGAATCTCTGGTGCC
TACATTTTTCTTTATCACACAGGTATTCGAAATGTTTCTGCGGAAGACTT
CAATAGGTTGTCCTTATTTCCTTCCTGTAGGGTGGACAACCAGGTCGCAG
ATAGCCGCTGCAACTGCTCTAGAAAGGCATTAGTCTTCGCCAACGCTATT
CCGAAAGGGGAAAAAGAGGACGTGCTGCAGAGGAAGAAAAAAGAACTACT
GAAGTACAGAAAAAGGTGAGGTTTCACGAGCTCGTGTTTAGAACTAGCTA
TCATTCATAATGTTTTATATGACGTAGTATTCATCCATAGGATTTGACCG
CGAGACCAGCCTAGACGTTTCCTTATTACAACCGTAAACAATCTTTGTTT
TCTGTCTGAGTTATCTATTTGCCTTAAAATGACTTTGTGTCATGAAGGCC
AGGTATCTTGTATTGTTATTACTTAGACTATCTTGATACGGGAGACATAA
TTCTACCTTGTTGTTGTAATGTATACNACCTAAGATTCCAATCTTATAAA
AAACCAGTCCTCTCCGGTGATTGAATGTATTCGCTTTATTTACAAGCTTT
GGCACGATCACTACAAAATATCTTTACCCGGATACACAACAGCAGCAGCA
GCAACTACATGGTAGTCAGAATAGCGCGTATAAGTTAGAAGGTTTCAGGG
CCATTTTACAGGTATGGCTTCGACAAAAAAAACACAGACCGTCCTCCCTT
GATCAATACATACGTGTGTCTTTCATAATTACTGGATGTGACAACTCTCA
GAACCAGCCAGGGGTCTTGATATATATTCATGATATACATATAGTGTATA
CACTGTCGGCCGGCGGTATCTGTAAATAATCGAAATATTTCGTGTCAATA
CAAGACAACTGAACCAAAAAATACATAAACACAGCAATCCTGCTTATAAA
CGTCAGATATGATATATCATATTACAGAGATCAAAGCAGGATATATTCAG
TTTATCAGTTTTTGTAATGCAGTAAAAACTGAGTCAAAGAGCACGATGGA
GTCTAATTGTTGCTTTGAGTAAAACATCAGCACTCACATCAAACTTTTGC
CGTTCGTTTGTGTGAAGTCTTGAAATCTATCGTATTCTATAAAGGTGGCT
GTAACAGATAGACATATATAAAATATTAGCCAATGGTATTATTGTGGCAA
AGATTAGAAAAAGGTGCACACCAGAAATATTGTTTATATCCAATAATCAT
CTTCTTTTTTTATTGAATTGTTCAAAGAAAAATGATAAATACAGGGAACC
ATCCGCCCATTAAAACATAGAGAATATGATTAACTAGATTTCGGCGACCA
TATGCCTCCATGAAATGTTTAGAGCTTTTGTGAATTTCTTGTTTTGTGCT
TGGCGATGTACAACTACAGCTAACTTGTGCATGTCGCAAGTATGCAATTC
CCATCATTTATATGCCATTTTTATATTACTCATGTAAAATGAGTTCCTCT
TTAGCATGTTTGGTATCTATTTTTGTTATTCCTGCCAGAAATTGCATGCG
TTATGTTTATTGAAGTCCAGTTATTGGAAACAGTGGATTTTAGAATTTCC
TCATTATTAATGCAACTAACGTATATTCAATTGTGCACATCTCTCCCTAA
GTTACACATGTACCTGTATGCCTAAAATGACGGAAATCCGTATTTCCTTT
CTTCAGTTACATGTATACTGTTTGGAACATTTGACAAAAATGCCCATGCA
GCTCCAGCTCAATAATAATTAAAACAAGAGTTTCGGCGTCCGTTTTTTTT
TTCACTTTAGGACCGAGTCCGCCAGGGAAACTTTGCTGTTTGCCAATGGC
TCCGTTCCCCTCAGCTACCCAACTCAAGGTTTGGCCGTGGTTCCGGAGGG
AGTGGTAGAAATACCAGGTAAGGCACCGTCAGGCTGTCTTACTTACAACA
CATATCTGCG Coding sequence (CDS) from alignment at Sc0000769:22785..27494+ >transcript:BL91319_cuf1 ID=transcript:BL91319_cuf1|Name=transcript:BL91319_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1512bp|location=Sequence derived from alignment at Sc0000769:22785..27494+ (Branchiostoma lanceolatum)
ATGGCAGATACGAAAACTTCCGTCATCACAAAAGAAGACTTGAGCTTCAA
GATGGCGGCGTCGCGTGGATTTATGTTTGGAGCAGCCCTCGCGGTGTGTT
TTCTTGTGACCACGTTAACTGGACTCGTCAGCTACACTTATCTAAGGAAG
CAGGGGGAAAGGTTAACACACTACAACAGACCCAGTACAAGACACCTGCT
ACAGAAACAGCCCGCCTCACAGGTGGACAACCAGGTCGCAGATAGCCGCT
GCAACTGCTCTAGAAAGGCATTAGTCTTCGCCAACGCTATTCCGAAAGGG
GAAAAAGAGGACGTGCTGCAGAGGAAGAAAAAAGAACTACTGAAGTACAG
AAAAAGGACCGAGTCCGCCAGGGAAACTTTGCTGTTTGCCAATGGCTCCG
TTCCCCTCAGCTACCCAACTCAAGGTTTGGCCGTGGTTCCGGAGGGAGTG
GTAGAAATACCAGGTAAGGCACCGTCAGGCTGTCTTACTTACAACACATA
TCTGATGGCAGATACGAAAACTTCCGTCATCACAAAAGAAGACTTGAGCT
TCAAGATGGCGGCGTCGCGTGGATTTATGTTTGGAGCAGCCCTCGCGGTG
TGTTTTCTTGTGACCACGTTAACTGGACTCGTCAGCTACACTTATCTAAG
GAAGCAGGGGGAAAGGTTAACACACTACAACAGACCCAGTACAAGACACC
TGCTACAGAAACAGCCCGCCTCACAGGTGGACAACCAGGTCGCAGATAGC
CGCTGCAACTGCTCTAGAAAGGCATTAGTCTTCGCCAACGCTATTCCGAA
AGGGGAAAAAGAGGACGTGCTGCAGAGGAAGAAAAAAGAACTACTGAAGT
ACAGAAAAAGGACCGAGTCCGCCAGGGAAACTTTGCTGTTTGCCAATGGC
TCCGTTCCCCTCAGCTACCCAACTCAAGGTTTGGCCGTGGTTCCGGAGGG
AGTGGTAGAAATACCAGGTAAGGCACCGTCAGGCTGTCTTACTTACAACA
CATATCTGATGGCAGATACGAAAACTTCCGTCATCACAAAAGAAGACTTG
AGCTTCAAGATGGCGGCGTCGCGTGGATTTATGTTTGGAGCAGCCCTCGC
GGTGTGTTTTCTTGTGACCACGTTAACTGGACTCGTCAGCTACACTTATC
TAAGGAAGCAGGGGGAAAGGTTAACACACTACAACAGACCCAGTACAAGA
CACCTGCTACAGAAACAGCCCGCCTCACAGGTGGACAACCAGGTCGCAGA
TAGCCGCTGCAACTGCTCTAGAAAGGCATTAGTCTTCGCCAACGCTATTC
CGAAAGGGGAAAAAGAGGACGTGCTGCAGAGGAAGAAAAAAGAACTACTG
AAGTACAGAAAAAGGACCGAGTCCGCCAGGGAAACTTTGCTGTTTGCCAA
TGGCTCCGTTCCCCTCAGCTACCCAACTCAAGGTTTGGCCGTGGTTCCGG
AGGGAGTGGTAGAAATACCAGGTAAGGCACCGTCAGGCTGTCTTACTTAC
AACACATATCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000769 | genome | Sc0000769:22785..27494 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL91319_cuf1 |
| Biotype | protein_coding |
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