transcript:BL91133_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL91133_cuf0
Unique Nametranscript:BL91133_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL91133_cuf0

>transcript:BL91133_cuf0-protein ID=transcript:BL91133_cuf0-protein|Name=transcript:BL91133_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=228bp
GVSRDRDASNAEDQSTGTKPSLDNQPGAHTGEKPYMCGECGYRTIRKSQL
SIHMRTHTDGKPYMCEECGYKTIKWSRFTRHMRTHTGERPYKCDDCDYSA
AQKGDLDRHLAKHSGDKPYMCGECGYRATQKTALTKHMRTHTGEKPYKCD
QCDYSAAQKSTLNSHLAKHTCEKPYMCGECGYRTADRGSLYRHMRTHTGE
KPYKCDQCDYSAAQKVHLDSHLAKHTGD
Run BLAST on NCBI

mRNA from alignment at Sc0000114:104147..104831-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL91133_cuf0 ID=transcript:BL91133_cuf0|Name=transcript:BL91133_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=685bp|location=Sequence derived from alignment at Sc0000114:104147..104831- (Branchiostoma lanceolatum)
TGGAGTTTCACGTGACAGGGACGCAAGCAATGCTGAGGACCAGTCGACAG
GAACCAAACCCAGTTTGGACAACCAGCCAGGAGCACATACCGGTGAGAAA
CCCTACATGTGTGGCGAGTGCGGGTACAGAACCATCAGAAAGTCTCAGTT
GTCCATACATATGAGAACCCACACTGATGGGAAACCTTACATGTGTGAGG
AGTGCGGGTACAAGACTATCAAATGGTCCAGGTTCACCAGACATATGAGA
ACCCACACAGGTGAAAGACCCTACAAATGTGACGACTGTGATTATTCTGC
TGCACAGAAAGGTGATTTAGACCGGCATTTAGCAAAACACTCTGGTGACA
AACCCTACATGTGTGGGGAGTGTGGATACAGGGCAACTCAAAAGACTGCC
TTAACCAAACATATGAGAACCCATACAGGTGAGAAACCCTACAAGTGTGA
CCAGTGTGATTATTCTGCTGCACAGAAATCCACATTGAACAGTCATCTAG
CAAAACACACCTGTGAGAAACCCTACATGTGTGGCGAGTGCGGGTACAGG
ACAGCTGACAGGGGTAGCCTATACAGACATATGAGAACCCATACTGGTGA
AAAACCCTACAAGTGTGACCAATGTGACTATTCTGCTGCACAAAAAGTCC
ATTTGGACAGCCATCTGGCCAAACATACCGGTGAC

Coding sequence (CDS) from alignment at Sc0000114:104147..104831-

>transcript:BL91133_cuf0 ID=transcript:BL91133_cuf0|Name=transcript:BL91133_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=684bp|location=Sequence derived from alignment at Sc0000114:104147..104831- (Branchiostoma lanceolatum)
GGAGTTTCACGTGACAGGGACGCAAGCAATGCTGAGGACCAGTCGACAGG
AACCAAACCCAGTTTGGACAACCAGCCAGGAGCACATACCGGTGAGAAAC
CCTACATGTGTGGCGAGTGCGGGTACAGAACCATCAGAAAGTCTCAGTTG
TCCATACATATGAGAACCCACACTGATGGGAAACCTTACATGTGTGAGGA
GTGCGGGTACAAGACTATCAAATGGTCCAGGTTCACCAGACATATGAGAA
CCCACACAGGTGAAAGACCCTACAAATGTGACGACTGTGATTATTCTGCT
GCACAGAAAGGTGATTTAGACCGGCATTTAGCAAAACACTCTGGTGACAA
ACCCTACATGTGTGGGGAGTGTGGATACAGGGCAACTCAAAAGACTGCCT
TAACCAAACATATGAGAACCCATACAGGTGAGAAACCCTACAAGTGTGAC
CAGTGTGATTATTCTGCTGCACAGAAATCCACATTGAACAGTCATCTAGC
AAAACACACCTGTGAGAAACCCTACATGTGTGGCGAGTGCGGGTACAGGA
CAGCTGACAGGGGTAGCCTATACAGACATATGAGAACCCATACTGGTGAA
AAACCCTACAAGTGTGACCAATGTGACTATTCTGCTGCACAAAAAGTCCA
TTTGGACAGCCATCTGGCCAAACATACCGGTGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL91133gene:BL91133Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL91133_cuf0-E1BL91133_cuf0-E1-1564476830-316229Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL91133_cuf0transcript:BL91133_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000114genomeSc0000114:104147..104831 -
Properties
Property NameValue
Transcript idBL91133_cuf0
Biotypeprotein_coding