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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL91112_cuf0 >transcript:BL91112_cuf0-protein ID=transcript:BL91112_cuf0-protein|Name=transcript:BL91112_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=150bp
MKPTVLVLALSAVVLKVLVLSPSGGQAQTTEVTVTDVDGFQVVTATPIPG
SFTTLKCAEACLNATSCLAFQGGISPSTTACNLYKTDESGRSGDYLYFKI
LTKVTYDSGVIPGLIGFFVGFVTCVVVFVVRCVVQKVRGCKDDVKFFFCC Run BLAST on NCBI mRNA from alignment at Sc0000132:444248..450662+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL91112_cuf0 ID=transcript:BL91112_cuf0|Name=transcript:BL91112_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=6415bp|location=Sequence derived from alignment at Sc0000132:444248..450662+ (Branchiostoma lanceolatum)
AGTGTGAGCAGCCCAAAGTTTCGGTCGCACCTCAGGGTTTAAGCGGAACC
GAAACTTAACTTTCACTTTAGAGCTTGTCAGTCGTCTCCTAAACCAGATC
TGAGAAACAACAGCTAGCTACCTGACTGTCGTTCCTATCATATCAAAATG
AAGCCCACAGTCCTGGTGTTAGCCTTGTCAGCAGTTGTACTCAAGGTGTT
GGTGTTGAGTCCCAGTGGCGGTCAAGCTCAAACAACCGGTAGGTAAAGTC
ACCTATCAAAGTAAACAAGACTAGCATTGTTGTACTCCGCGGCGACTCTG
TGAGGATTACAAATACGAGGGTGCGTAAAGAACTAATGGAAATCGTTTTG
TAACAGGCTCATTTTTTCATCGAATGAGTAAGATTTTCCTGATCCACTTT
TAGTTTTTGTAGTGTATCTCTATAAACCCTTGCTTGTTTTCATTTCTGAA
ATCTTATCAGTTTTTCTTTTTCCGTTGCTGGAGAGGAGTGAGGTATGAGT
TGAACTCAAAGTGGTCGACAGGGTCCTGAATATGGGGTTCTGATGATTAA
AGGTTTCTGTAGACCACGTTCCGAAAAACTAAGGGAGACGAAACTTAACG
CCTGTTGGTCTTGAAACACTTAATAATTGGATGAAGTTTCGGTTCTCCTA
GTTAATGGAAAAGTAGTCTAATCAATACGTAACACTGAAGATTTGGCGGT
GAATCTAACAGGCTCTAACGTCTCATCTTACTCGTCGGCTGTAAAAGAGG
AACTTTTGGGATGAAAATTGGCGTGTAAACTGAAGAGACATTTATGCTTT
TACATGTGTAATTTCAGCTTCGTACATAAATTGTAAGTGGTAAGATCTGG
AAAGCGGGTAAGATAGTGGAACTGATCTACTAACATAGTGCCAATTAAGG
ATGTGGTAATTTTCAAGTCAACTCATTCCCTCATACAAATCTAAACAACA
AATGGCTATATTTCAGTCTCAAGAAGATATGTGAATTTGTCTTTGTGCCA
AATTTCAACTCATTCGATGAAGGAAATGAGCCTGTTTTATAAAACGACTT
TCATTAGTTATTATGCACCCTCGTACGTCCTCCCCGTCTGAGTCGCCGCG
GCTACCTCCGTTACAGACTTCCCTCGGTATCAGGACTGCTTGGCCCCTGA
ACAGTTCTGCCCCTGGATAATTCTGCCCCTGGACTGGTCGGCCCCGACGT
TTCGGCCCCGAGTCCAGGAGAGCATGGCCCCAAGTCCAGGACGGGTTCGG
CCCCAAGTCCAGGACGGGCTCGGCCCCAAGTCCAGGACAGGTTCGGCCCC
AAGTCCAGGACGGGTTCGGCCCCAAGTCCAGGACGGCATGGCTCCAGGGC
CAGGGAGCTATACCTTAGCCAGGACGTTCCGGCCCCGTTAGTTCTTCTTA
TGTGTATAAGTGTTCGCGCGTATATCGTATTACGTTATTTTACCTCCTTG
GTATATCGGAAAGTCAACATGGTTTTCAATAGAGACCATGGCCACGTCCC
TTTGTCTCTTTGTACTTGGTACGCGTATCCTTGATATCGGCGATCAACAT
GGCATGCTTCGTAAATAGAGACAGCGTCCCTTTGTCTGCCTACATTAGAC
GACACATTTGTTTTTATTTTTTTGCTAAGTAGACATCATTTTATCTAGAA
AATGACTGAAAATAGAATTTGAAATTCACACGCATTCCTGACATACATTA
GCTGTCACGACCAGTGGACTGTTAATTTATCAAGGTAAACCGAAATCACT
TTCACTTTCGTGTTTGTGTAGTAAATCATACTAAATGACAAATATTTTGT
CATGTTTTCTCCAACAGAAAGGTTATATTAAGAGCAGCTGTCTGTAAAAA
CCAAGCATAAGGTGGCCAAGTTCAAAAAATGAAATTTTCTTAGATTTTGT
GTGGTGGTAGGGTCTTGGCCCAAACCTACAAAAATGGGAAAGTTTTTGGT
CGGAGGTTACCAGTTGCCATGGTAACGGCCATTTTTCAAAATGGCGGATT
TTCGCCTTGTGAAGGCCTCTCTCTCGCTCAAAATGGACCATCTTTGGCCT
ACTGTAACTCCCACAAATGAATAGAAATGTTGCTGCCTCTAACATATTAT
ATTATCCATATCTTGACAAGAAAAACGATGTAAAGTTTTGCTCAAAATGT
TTTCGCAGTGAGATGCAACAAACGTTTAAAGATGACCTGTTTTTGTGAAA
TTTCAAAATTGACAAAACGCAATTTTTTGGACGTTTTTAGCAAGCAATAC
CTCCTTAAAAGACACTTCAAATTTGTTGATTTTTGGCACAGCTCTAGTTT
AGACCTTTATAAATATCATATTGTAAAAGAAGTCTGGGTTCTCAATGGGG
CGGGCCACAGTGACCCGGAGACTAAGCCATTGTTTCCATTGTAGCAGAAT
TTCAACTACAGAATTGAAGGTGAAATAAACATGTGCAACTTGGTGATTGA
GATAAGAATGACTTTTCTTGAACTTTTTTATGGTGCAAGAAACCTGCCTG
GCACTTAGAAAAGTATTTTGTAACAGTTGACTGTTGGTTGCCATGGCAAC
GGTCATCTTTGTTGTTAATGATGGATTTTCACATGGTTGTATTAGGAAAA
CATCCCTATAGCTACCTGCTGATTGCACTAGAGATATGGACATAACTTTT
ATATTTCCATATAGCATGGTTTCCAACGTTTCATAGACCAAAAGTTCAAG
ATCAAGCATTAAGATTAAGAGGGTGTACTAGGGGGTTATCAGAACCAATG
AAATCAGAATTTTCATCTTGCTAAATTTTAGTCATTTTCAAGGGGCTTTT
TCTTCCATCATGGGCAAAGTTGATGAATGCATGGCACATAGAAAAGTATT
TTGTAACAGTTGACTGCTGGTTGCCATGGCAACGGCCATCTTTGTTCTTG
ATGGTGGATGTTCACATTGTTGTAGGAGGAAAACATCCATAGCTTTGTTA
CATATGTAAAGAAAATGAAATCTGACGTTTTTTCATGTAACAAAGAATCC
TACCTATTACTTAGGAAAGTAGGTTTCTTCATTGTAACAGTCTTTCAAAG
GTTCAAAATTGGTTCAAAATTGGTTCTTATTCAGGATTGGCAAGTTGGAA
ATTGAGATGATAATATGATTTTTTTTAAACCTTTATGCTGCAAGGAACCT
ACCTGGCACTTCTAATTTTTTATTGCTGGTTGCCATGGCAACGGCCATTC
TTTTATTTTCTATCTTTACTGGTTTTTCAAAGTGAATTACCGATGCAACT
ACTAACAGGATATGGACATACATGGGTCACAACAAAAGCCAAATAAAAAC
TGGGACAATGTGTACATGTGCAGCACACAATACAATCATACACTTACAGA
TAATCATAGCTTCCCTTAATACCCTTATAAATATTAATTCTAATTTGCCT
CCAAACAACATTTTTTAAGTATATAATTACATATCATTATTTCTTACATC
TATATTATTATATAAATGTGAAACGGCCATACTTAATGACGGATATTCAC
AAGGTAAATGTCATAGTTATGCACACAGTAAAGTATTTGACCTTCTGCAA
TTCCCACTGACAAAAAAGGGGAGTAGTAGGACGCTATGCATCTGATATGA
TACATCCGGATGCGGAGACAGTTGCTTTTAAGATTGTTTATACAATTTGA
AAATTATAATGGGTAGACCATCATAAAATTGAAGACGAAGTAGTACTTTT
AACCAATAGCTCACTAAAACAAAGTTAATGAACTGAGCTTAAGAGGGGCC
TTGTATTTTTGTCAGGGACTATACTTTGATTTGACTATTTATGCTAATAA
AGTTAAGATTTCTTTCTATAGAATTATTCTATATATACTGCATACTTTTT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTA
GGGATGTTTTCCTAATACAACCATGTGAAAATCCATCATTAACAACAAAG
ATGACCGTTGCCATGGCAACCAACAGTCAACTGTTACAAAATACTTTACT
AAGTGCCAGGCAGGTTTCTTGCACCATAAAAAAGTTCAAGAAAAGTCATT
CTTATCTCAATCACCAAGTTGCACATGTTTATTTCACCTTCAATTCTGTA
GTTGAAATTCTGCTACAATGGAAACAATGGCTTAGTCTCCGGGTCACTGT
GGCCCGCCCCATTGAGAACCCAAACTTCTTTTACAATATGATATTTATAA
AGATCTAAACTAGAGCTGTGCCAAAAATCAACAAATTTGAAGTGCCCTTT
AAGGAGGTATTGCTTGCTAAAAACGTCCAAAAAATTGCGTTTTGTCAATT
TTGAAATTTCACAAAAACAGGTCATCTTTAAACATTTGTTGCATCTCACT
GCGAAAACATTTTGAGCAACACTTTACATCGTTTTTCTTGTTAAGATATG
GATAATATAATATGTTAGAGGCAGCAACATTTCTATTCATTTGTGGGAGT
TACAGTAGGCCAAAGATGGTCCATTTTGAGCGAGAGAGAGGCCTTCACAA
GGCGAAAATCCGCCATTTTGAAAAATGGCCGTTACCATGGCAACTGGTAA
CCTCCGACCAAAAACTTTCCCATTTTTGTAGGTTTGGGCCAAGACCTTAC
CACCACACAAAATCTAAGAAAATTTCATTTTTTGAACTTGGCCACTTTTT
CCTCATTTTGCTTGGTTTTTACAGACAGCTGCTCTTAAACCTGCCCTCAA
ATGCACTTGGTTTGGGTACTAACTAAAAAAAAAAATTCTATTGCAGAAGT
CACAGTGACAGACGTGGACGGATTTCAGGTAGTCACAGCCACGCCCATTC
CCGGCAGTTTTACCACACTCAAATGTGCGGAAGCTTGCCTGAACGCCACC
TCCTGCCTGGCCTTTCAGGGTGGAATCTCTCCATCCACTACAGCCTGCAA
CCTGTACAAAACGGACGAGAGTGGCAGGAGCGGCGACTACTTGTACTTCA
AGATTCTCACTAAGGGTAAATGCGATATTTCTCAAATATCATGTTTGCAT
TATCTATTTTTGCCATTTAGAAAACAAATGTAAGTAACGGCTAGGCATTT
TTAAATATTTATCTTACTTGCAATGTCCTTAACATACAGATTGTAAGTGT
AACCTTTATCTAAAGAACCGCTTTGTCCCTTTTTCTACAGTTACATACGA
CAGTGGTGTCATTCCGGGTTTAATCGGTTTTTTTGTTGGATTTGTAACGT
GCGTGGTAGTGTTCGTGGTGCGGTGTGTCGTCCAGAAAGTACGAGGTTGC
AAAGATGACGTCAAGTTCTTCTTTTGTTGCTAGGGTCATTTTAAACTGCA
GCCGGGTTTACCCTGGAATTACTCCCCACTGTGACCTTCCCAGCAGTTTG
AGAGGTAAATTGGCCCCATAAGTACATCAACACATAAAACTTAAAGACTG
TCTTCAAGCTGAAAGCAAAGGCGGGAGCAGATTAGCATAATACTGACCAA
AATATTCAAATATTCTTCTCTACTGTCAGACTTGTATCAAAGTTATTTTA
TTAGGCTAGCTATGTTTGTAACTTGAAAATGTCTTCCTCATAGCTGAATT
AGCTTTGATTGTTGTGTGTCTAGAAATGTGGCTAATAATGACTGGTATCT
ATTTGTCAGTCTAAGAAACTAGTACAGACAGGGACTACATGTAGAACTAT
ACAGTCAAACTGCCAGCCATGTCTCTAATAGCCAGTAAGAGCGTGGAAAG
CTGGGGTTGTCATTACCTTCCATTCTGGGTAAGGTGAATCTTTAGATGCA
ACAATGCTTCAATTCCTTATACTGTATGTTGTTTCTACATTTCAAAGGTG
TATTTGAGAGTTACTTGTGTTGGTCACTGTCTTAGACATAGCCAGGCCTC
CACTGATCTGAACACCACAACAGTCAGCAGCAGACTGACTGGTAGTTTAT
GTTTGCCAAATTTATTGGGTGATTTTCTTGTACAAGCATGGTCTTCAAGT
CAACTATTACCTCTGCTCTGTCATTACATTGTACATATTTGTTTGCTTGT
TTGTTTGTTTGTTTGTTTCTTTGTTTCTATGAATGGTATAACCAGTAAAG
TCAGCTTTATGAATTTAGGCATAGCACACAAATTTTGTACGCTAATACAA
TCTGTGTATCCAAAAGTCTTCAATTATGATTTTACATTGCATATCACACA
TGTTCAACTTTGTATTGTTTAATGAAGGTCTTTCAGAGAAAGTTGATAAA
AATAAAATCTGAGAC Coding sequence (CDS) from alignment at Sc0000132:444248..450662+ >transcript:BL91112_cuf0 ID=transcript:BL91112_cuf0|Name=transcript:BL91112_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1359bp|location=Sequence derived from alignment at Sc0000132:444248..450662+ (Branchiostoma lanceolatum)
ATGAAGCCCACAGTCCTGGTGTTAGCCTTGTCAGCAGTTGTACTCAAGGT
GTTGGTGTTGAGTCCCAGTGGCGGTCAAGCTCAAACAACCGAAGTCACAG
TGACAGACGTGGACGGATTTCAGGTAGTCACAGCCACGCCCATTCCCGGC
AGTTTTACCACACTCAAATGTGCGGAAGCTTGCCTGAACGCCACCTCCTG
CCTGGCCTTTCAGGGTGGAATCTCTCCATCCACTACAGCCTGCAACCTGT
ACAAAACGGACGAGAGTGGCAGGAGCGGCGACTACTTGTACTTCAAGATT
CTCACTAAGGTTACATACGACAGTGGTGTCATTCCGGGTTTAATCGGTTT
TTTTGTTGGATTTGTAACGTGCGTGGTAGTGTTCGTGGTGCGGTGTGTCG
TCCAGAAAGTACGAGGTTGCAAAGATGACGTCAAGTTCTTCTTTTGTTGC
TAGATGAAGCCCACAGTCCTGGTGTTAGCCTTGTCAGCAGTTGTACTCAA
GGTGTTGGTGTTGAGTCCCAGTGGCGGTCAAGCTCAAACAACCGAAGTCA
CAGTGACAGACGTGGACGGATTTCAGGTAGTCACAGCCACGCCCATTCCC
GGCAGTTTTACCACACTCAAATGTGCGGAAGCTTGCCTGAACGCCACCTC
CTGCCTGGCCTTTCAGGGTGGAATCTCTCCATCCACTACAGCCTGCAACC
TGTACAAAACGGACGAGAGTGGCAGGAGCGGCGACTACTTGTACTTCAAG
ATTCTCACTAAGGTTACATACGACAGTGGTGTCATTCCGGGTTTAATCGG
TTTTTTTGTTGGATTTGTAACGTGCGTGGTAGTGTTCGTGGTGCGGTGTG
TCGTCCAGAAAGTACGAGGTTGCAAAGATGACGTCAAGTTCTTCTTTTGT
TGCTAGATGAAGCCCACAGTCCTGGTGTTAGCCTTGTCAGCAGTTGTACT
CAAGGTGTTGGTGTTGAGTCCCAGTGGCGGTCAAGCTCAAACAACCGAAG
TCACAGTGACAGACGTGGACGGATTTCAGGTAGTCACAGCCACGCCCATT
CCCGGCAGTTTTACCACACTCAAATGTGCGGAAGCTTGCCTGAACGCCAC
CTCCTGCCTGGCCTTTCAGGGTGGAATCTCTCCATCCACTACAGCCTGCA
ACCTGTACAAAACGGACGAGAGTGGCAGGAGCGGCGACTACTTGTACTTC
AAGATTCTCACTAAGGTTACATACGACAGTGGTGTCATTCCGGGTTTAAT
CGGTTTTTTTGTTGGATTTGTAACGTGCGTGGTAGTGTTCGTGGTGCGGT
GTGTCGTCCAGAAAGTACGAGGTTGCAAAGATGACGTCAAGTTCTTCTTT
TGTTGCTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000132 | genome | Sc0000132:444248..450662 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL91112_cuf0 |
| Biotype | protein_coding |
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